Rmu_co8471033.1_g000001
ERF Family

mTERF

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8471033.1
OG0000263
Physical Location & Seq
Reverse (-)
477 .. 1700
1224 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8471033.1_g000001.1.cds

Sequence Viewer

Length: 1224 bp
atgtttggtgtttactgtaaaagattgcaattactagttccaacttcagttacccattttcattgctttcaaaagttccttccctttagcagatcatattcatctttattaggatctgatatagatgatgatgatgatgataaaccccaaggtcactcttttacagtttcatacctcataaactcatttgggttttccccaaaactggctctctctctgtccaataagcatagggtacggtttgattccccagaaaaaccagactcagttgttaagcttctcaaacaccatgggttcaatggtacccagatatccgaaattgttaagaaactaccaaccttgcttttgtgcaatgctgagaagacccttgagcccaagctccagttttttgattctattggcctttcagccaccgcccttgcttgggtcgtcagttacaaccgacgcattttgggtcaaagtttagagagaagtctccgaccgtgctatgatatcatcaaaagtctacctatccccgacaacatggtggctgttttcttgaagaactcgaaccgggcatttggggtcaagatgcttagcaatcttgttcccaatgtttcagttcttagggcaattcaagtgccggaatcctgcatctccttttatgttacctatcatcctcttgtgctgtcccctgaaactagcaagtttaaggaaagtgtaaacaagatcattaatctcggaattctgcctccgagttttactttcatgaaggcactacaagtcatctctcagatggatgcatcaaagtggagacgaaagacagagttctataggaagtgcggttggactgaggatgactttctgttggcatttagaaagaatcccatgtttatgagcttgtcagaggagaagtcttcaagtaaaattgagtttcttgtgaacaaaatgggttggcagcctgcagaagtggctgacaggcctgatattctaactcatagtttggagaagtctatcatacctaggtgttcagttattagagttctccaatataagggtttgatgaaaaagggagaactttctcaagctaccatgctgataaacagtaggaagcgcttcttggataggtttgtgaccaaatatcaggatcaagcacctgaactgttgagtatctttcaagggcaaatgtctctagcagaattgggtgtaggatttgaggaaagagatggagtgaaacaattgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
mTERF

Protein Analysis

407

Amino Acids

46.37

Weight (kDa)

9.36

Isoelectric Point (pI)

48.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000263)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G21150 AT1G21150 AT1G21150
fragaria_vesca FvH4_4g17900 FvH4_6g26110 FvH4_6g33880 FvH4_6g33900 FvH4_6g34011 FvH4_6g34011 FvH4_6g34011 FvH4_6g34011 FvH4_6g34030 FvH4_6g34040 FvH4_6g34070 FvH4_6g34070 FvH4_7g12830
malus_domestica MD09G1189800.v1.1 MD09G1189900.v1.1 MD09G1190000.v1.1 MD14G1088800.v1.1 MD14G1088900.v1.1 MD17G1172900.v1.1
pyrus_communis pycom07g03460 pycom09g10650 pycom14g07860
rosa_chinensis RchiOBHm_Chr1g0351891 RchiOBHm_Chr1g0351901 RchiOBHm_Chr2g0143771 RchiOBHm_Chr2g0143861 RchiOBHm_Chr2g0143881 RchiOBHm_Chr2g0143941 RchiOBHm_Chr2g0143951 RchiOBHm_Chr2g0144081 RchiOBHm_Chr2g0144091 RchiOBHm_Chr2g0144211 RchiOBHm_Chr2g0144231 RchiOBHm_Chr2g0144241 RchiOBHm_Chr2g0144291 RchiOBHm_Chr2g0144301 RchiOBHm_Chr2g0144311 RchiOBHm_Chr2g0144331 RchiOBHm_Chr2g0144341 RchiOBHm_Chr4g0422021 RchiOBHm_Chr4g0422031
rosa_laevigata RLG00000007639 RLG00000020063 RLG00000020071 RLG00000020072 RLG00000020074
rosa_multiflora Rmu_co8214640.1_g000001 Rmu_co8471033.1_g000001 Rmu_sc0000789.1_g000002 Rmu_sc0001321.1_g000001 Rmu_sc0004340.1_g000001 Rmu_sc0004897.1_g000001 Rmu_sc0007105.1_g000005 Rmu_sc0009498.1_g000001 Rmu_sc0009498.1_g000002 Rmu_sc0019136.1_g000001 Rmu_sc0020327.1_g000002 Rmu_sc0020327.1_g000003 Rmu_sc0022905.1_g000001 Rmu_sc0032602.1_g000003 Rmu_sc0032602.1_g000004
rosa_roxburghii Rroxscaffold_2G00101380 Rroxscaffold_2G00101390 Rroxscaffold_2G00101400 Rroxscaffold_2G00101410 Rroxscaffold_2G00101480 Rroxscaffold_2G00101490 Rroxscaffold_4G00303470 Rroxscaffold_5G00364130 Rroxscaffold_5G00364150
rosa_rugosa Rorug01G0222600 Rorug02G0384700 Rorug02G0384800 Rorug02G0385800 Rorug02G0385900 Rorug02G0386000 Rorug02G0386000 Rorug02G0386100 Rorug04G0176700 Rorug04G0176800.1
rosa_samantha Rh1AG236500 Rh1AG236600 Rh1BG206900 Rh1CG221000 Rh1CG221100 Rh2BG444800 Rh2BG444900 Rh2BG446600 Rh2BG446700 Rh2BG447600 Rh2BG448100 Rh2BG448400 Rh2BG448500 Rh2BG448700 Rh2BG448800 Rh2CG423500 Rh2CG423600 Rh2CG424800 Rh2CG424900 Rh2CG425100 Rh2CG425200 Rh2DG455200 Rh2DG455300 Rh2DG456900 Rh2DG457000 Rh2DG457100 Rh2DG457600 Rh2DG457900 Rh2DG458000 Rh2DG458300 Rh2DG458400 Rh4AG236100 Rh4AG236200 Rh4BG239200 Rh4CG250900 Rh4CG251100
rosa_wichuraiana Rw0G000400 Rw0G015990 Rw0G017200 Rw1G020580 Rw2G033310 Rw2G035630 Rw2G035640 Rw2G035790 Rw2G035800 Rw2G035840 Rw2G036160 Rw4G019830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 302
AccB1I GGYRCC 1 cut(s) 302
AccI GTMKAC 1 cut(s) 505
AciI CCGC 2 cut(s) 414, 822
AclWI GGATC 2 cut(s) 121, 1134
AcsI RAATTY 1 cut(s) 723
AcuI CTGAAG 1 cut(s) 30
AfaI GTAC 2 cut(s) 237, 304
AfeI AGCGCT 1 cut(s) 1094
AfiI CCNNNNNNNGG 4 cut(s) 205, 423, 424, 1033
AgsI TTSAA 6 cut(s) 71, 298, 541, 617, 900, 1157
AhlI ACTAGT 1 cut(s) 34
AjuI GAANNNNNNNTTGG 2 cut(s) 1082, 1114
AluBI AGCT 4 cut(s) 277, 379, 879, 1067
AluI AGCT 4 cut(s) 277, 379, 879, 1067
Alw26I GTCTC 3 cut(s) 479, 787, 1173
AlwI GGATC 2 cut(s) 121, 1134
Aor51HI AGCGCT 1 cut(s) 1094
AoxI GGCC 2 cut(s) 400, 959
ApeKI GCWGC 1 cut(s) 937
ApoI RAATTY 1 cut(s) 723
AseI ATTAAT 1 cut(s) 714
Asp700I GAANNNNTTC 1 cut(s) 1094
Asp718I GGTACC 1 cut(s) 302
AspA2I CCTAGG 1 cut(s) 1001
AspLEI GCGC 1 cut(s) 1095
AsuC2I CCSGG 1 cut(s) 554
AvrII CCTAGG 1 cut(s) 1001
BanI GGYRCC 1 cut(s) 302
BanII GRGCYC 1 cut(s) 375
BbsI GAAGAC 2 cut(s) 368, 888
BbvI GCAGC 1 cut(s) 949
BccI CCATC 2 cut(s) 769, 1199
BcnI CCSGG 1 cut(s) 554
BcoDI GTCTC 3 cut(s) 479, 787, 1173
BcuI ACTAGT 1 cut(s) 34
BfaI CTAG 4 cut(s) 35, 681, 1002, 1172
BfmI CTRYAG 2 cut(s) 811, 942
BfoI RGCGCY 1 cut(s) 1096
BisI GCNGC 1 cut(s) 938
BlnI CCTAGG 1 cut(s) 1001
BlpI GCTNAGC 1 cut(s) 575
BlsI GCNGC 1 cut(s) 939
Bme1390I CCNGG 1 cut(s) 554
BmiI GGNNCC 1 cut(s) 304
BmrFI CCNGG 1 cut(s) 554
BmsI GCATC 4 cut(s) 561, 642, 769, 791
BpiI GAAGAC 2 cut(s) 368, 888
BpmI CTGGAG 1 cut(s) 365
Bpu1102I GCTNAGC 1 cut(s) 575
BpuEI CTTGAG 2 cut(s) 389, 1047
BpuMI CCSGG 1 cut(s) 554
BsaJI CCNNGG 3 cut(s) 148, 289, 1001
Bsc4I CCNNNNNNNGG 4 cut(s) 205, 423, 424, 1033
Bse1I ACTGG 2 cut(s) 210, 382
Bse3DI GCAATG 2 cut(s) 61, 358
BseDI CCNNGG 3 cut(s) 148, 289, 1001
BseGI GGATG 3 cut(s) 655, 784, 841
BseLI CCNNNNNNNGG 4 cut(s) 205, 423, 424, 1033
BseMI GCAATG 2 cut(s) 61, 358
BseMII CTCAG 4 cut(s) 279, 348, 785, 822
BseNI ACTGG 2 cut(s) 210, 382
BseRI GAGGAG 1 cut(s) 902
BseXI GCAGC 1 cut(s) 949
Bsh1285I CGRYCG 1 cut(s) 482
BshFI GGCC 2 cut(s) 402, 961
BshNI GGYRCC 1 cut(s) 302
BsiEI CGRYCG 1 cut(s) 482
BsiSI CCGG 2 cut(s) 553, 623
BslFI GGGAC 1 cut(s) 655
BslI CCNNNNNNNGG 4 cut(s) 205, 423, 424, 1033
BsmAI GTCTC 3 cut(s) 479, 787, 1173
BsmBI CGTCTC 1 cut(s) 787
BsmFI GGGAC 1 cut(s) 655
BsnI GGCC 2 cut(s) 402, 961
Bsp1286I GDGCHC 1 cut(s) 375
Bsp143I GATC 4 cut(s) 92, 113, 708, 1126
Bsp1720I GCTNAGC 1 cut(s) 575
Bsp19I CCATGG 1 cut(s) 289
BspACI CCGC 2 cut(s) 414, 822
BspANI GGCC 2 cut(s) 402, 961
BspCNI CTCAG 4 cut(s) 278, 349, 784, 823
BspHI TCATGA 1 cut(s) 747
BspLI GGNNCC 1 cut(s) 304
BspMAI CTGCAG 1 cut(s) 946
BspPI GGATC 2 cut(s) 121, 1134
BspT107I GGYRCC 1 cut(s) 302
BsrDI GCAATG 2 cut(s) 61, 358
BsrI ACTGG 2 cut(s) 210, 382
BssECI CCNNGG 3 cut(s) 148, 289, 1001
BssMI GATC 4 cut(s) 92, 113, 708, 1126
BssT1I CCWWGG 3 cut(s) 148, 289, 1001
Bst4CI ACNGT 6 cut(s) 17, 166, 240, 483, 1085, 1143
BstC8I GCNNGC 1 cut(s) 942
BstDEI CTNAG 6 cut(s) 265, 357, 575, 605, 771, 831
BstDSI CCRYGG 1 cut(s) 289
BstF5I GGATG 3 cut(s) 655, 784, 841
BstH2I RGCGCY 1 cut(s) 1096
BstHHI GCGC 1 cut(s) 1095
BstKTI GATC 4 cut(s) 95, 116, 711, 1129
BstMAI GTCTC 3 cut(s) 479, 787, 1173
BstMBI GATC 4 cut(s) 92, 113, 708, 1126
BstMCI CGRYCG 1 cut(s) 482
BstMWI GCNNNNNNNGC 1 cut(s) 950
BstSCI CCNGG 1 cut(s) 552
BstSFI CTRYAG 2 cut(s) 811, 942
BstV1I GCAGC 1 cut(s) 949
BstV2I GAAGAC 2 cut(s) 368, 888
BstX2I RGATCY 1 cut(s) 113
BstYI RGATCY 1 cut(s) 113
BsuRI GGCC 2 cut(s) 402, 961
BtgI CCRYGG 1 cut(s) 289
BtsCI GGATG 3 cut(s) 655, 784, 841
Cac8I GCNNGC 1 cut(s) 942
CciI TCATGA 1 cut(s) 747
CfoI GCGC 1 cut(s) 1095
CseI GACGC 1 cut(s) 453
Csp6I GTAC 2 cut(s) 236, 303
CspCI CAANNNNNGTGG 2 cut(s) 400, 435
CviAII CATG 5 cut(s) 290, 523, 748, 868, 1072
CviQI GTAC 2 cut(s) 236, 303
DdeI CTNAG 6 cut(s) 265, 357, 575, 605, 771, 831
DpnI GATC 4 cut(s) 94, 115, 710, 1128
DpnII GATC 4 cut(s) 92, 113, 708, 1126
Eco130I CCWWGG 3 cut(s) 148, 289, 1001
Eco147I AGGCCT 1 cut(s) 961
Eco24I GRGCYC 1 cut(s) 375
Eco32I GATATC 2 cut(s) 312, 493
Eco47III AGCGCT 1 cut(s) 1094
Eco57I CTGAAG 1 cut(s) 30
EcoRI GAATTC 1 cut(s) 723
EcoRV GATATC 2 cut(s) 312, 493
EcoT14I CCWWGG 3 cut(s) 148, 289, 1001
EcoT22I ATGCAT 1 cut(s) 784
EcoT38I GRGCYC 1 cut(s) 375
ErhI CCWWGG 3 cut(s) 148, 289, 1001
Esp3I CGTCTC 1 cut(s) 787
FaeI CATG 5 cut(s) 293, 526, 751, 871, 1075
FalI AAGNNNNNCTT 2 cut(s) 1082, 1114
FaqI GGGAC 1 cut(s) 655
FatI CATG 5 cut(s) 289, 522, 747, 867, 1071
FblI GTMKAC 1 cut(s) 505
Fnu4HI GCNGC 1 cut(s) 938
FokI GGATG 3 cut(s) 642, 791, 848
FriOI GRGCYC 1 cut(s) 375
Fsp4HI GCNGC 1 cut(s) 938
FspBI CTAG 4 cut(s) 35, 681, 1002, 1172
GlaI GCGC 1 cut(s) 1094
GluI GCNGC 1 cut(s) 938
GsuI CTGGAG 1 cut(s) 365
HaeII RGCGCY 1 cut(s) 1096
HaeIII GGCC 2 cut(s) 402, 961
HapII CCGG 2 cut(s) 553, 623
HgaI GACGC 1 cut(s) 453
HhaI GCGC 1 cut(s) 1095
Hin1II CATG 5 cut(s) 293, 526, 751, 871, 1075
Hin6I GCGC 1 cut(s) 1093
HinP1I GCGC 1 cut(s) 1093
HindIII AAGCTT 1 cut(s) 275
HinfI GANTC 5 cut(s) 245, 263, 392, 626, 862
HpaII CCGG 2 cut(s) 553, 623
Hpy166II GTNNAC 4 cut(s) 13, 506, 703, 922
Hpy188I TCNGA 7 cut(s) 118, 316, 479, 722, 735, 774, 886
Hpy188III TCNNGA 4 cut(s) 538, 568, 748, 1124
Hpy8I GTNNAC 4 cut(s) 13, 506, 703, 922
Hpy99I CGWCG 1 cut(s) 447
HpyAV CCTTC 2 cut(s) 89, 745
HpyCH4III ACNGT 6 cut(s) 17, 166, 240, 483, 1085, 1143
HpyCH4V TGCA 5 cut(s) 28, 351, 633, 782, 944
HpyF10VI GCNNNNNNNGC 1 cut(s) 950
HpyF3I CTNAG 6 cut(s) 265, 357, 575, 605, 771, 831
Hsp92II CATG 5 cut(s) 293, 526, 751, 871, 1075
HspAI GCGC 1 cut(s) 1093
KpnI GGTACC 1 cut(s) 306
Kzo9I GATC 4 cut(s) 92, 113, 708, 1126
LmnI GCTCC 1 cut(s) 384
Lsp1109I GCAGC 1 cut(s) 949
LweI GCATC 4 cut(s) 561, 642, 769, 791
MaeI CTAG 4 cut(s) 35, 681, 1002, 1172
MaeIII GTNAC 5 cut(s) 49, 152, 434, 646, 1111
MalI GATC 4 cut(s) 94, 115, 710, 1128
MboI GATC 4 cut(s) 92, 113, 708, 1126
MboII GAAGA 3 cut(s) 373, 553, 888
MfeI CAATTG 1 cut(s) 1217
MflI RGATCY 1 cut(s) 113
MhlI GDGCHC 1 cut(s) 375
MluCI AATT 7 cut(s) 29, 318, 612, 723, 906, 1178, 1217
MlyI GAGTC 1 cut(s) 257
MmeI TCCRAC 3 cut(s) 65, 502, 806
MnlI CCTC 6 cut(s) 185, 669, 741, 826, 880, 1189
Mph1103I ATGCAT 1 cut(s) 784
MroXI GAANNNNTTC 1 cut(s) 1094
MseI TTAA 4 cut(s) 273, 324, 690, 714
MslI CAYNNNNRTG 2 cut(s) 787, 872
MspI CCGG 2 cut(s) 553, 623
MspR9I CCNGG 1 cut(s) 554
MunI CAATTG 1 cut(s) 1217
MwoI GCNNNNNNNGC 1 cut(s) 950
NciI CCSGG 1 cut(s) 554
NcoI CCATGG 1 cut(s) 289
NdeII GATC 4 cut(s) 92, 113, 708, 1126
NlaIII CATG 5 cut(s) 293, 526, 751, 871, 1075
NlaIV GGNNCC 1 cut(s) 304
NmuCI GTSAC 2 cut(s) 152, 1111
NsiI ATGCAT 1 cut(s) 784
PagI TCATGA 1 cut(s) 747
PceI AGGCCT 1 cut(s) 961
PdmI GAANNNNTTC 1 cut(s) 1094
PfeI GAWTC 4 cut(s) 245, 392, 626, 862
PkrI GCNGC 1 cut(s) 939
PleI GAGTC 1 cut(s) 257
PpsI GAGTC 1 cut(s) 257
PshBI ATTAAT 1 cut(s) 714
PspN4I GGNNCC 1 cut(s) 304
PstI CTGCAG 1 cut(s) 946
PsuI RGATCY 1 cut(s) 113
RsaI GTAC 2 cut(s) 237, 304
RsaNI GTAC 2 cut(s) 236, 303
RseI CAYNNNNRTG 2 cut(s) 787, 872
SaqAI TTAA 4 cut(s) 273, 324, 690, 714
SatI GCNGC 1 cut(s) 938
Sau3AI GATC 4 cut(s) 92, 113, 708, 1126
SchI GAGTC 1 cut(s) 257
ScrFI CCNGG 1 cut(s) 554
SduI GDGCHC 1 cut(s) 375
SfaNI GCATC 4 cut(s) 561, 642, 769, 791
SfcI CTRYAG 2 cut(s) 811, 942
SmiMI CAYNNNNRTG 2 cut(s) 787, 872
SmlI CTYRAG 2 cut(s) 368, 1062
SmoI CTYRAG 2 cut(s) 368, 1062
SpeI ACTAGT 1 cut(s) 34
Sse9I AATT 7 cut(s) 29, 318, 612, 723, 906, 1178, 1217
SseBI AGGCCT 1 cut(s) 961
SsiI CCGC 2 cut(s) 414, 822
SspMI CTAG 4 cut(s) 35, 681, 1002, 1172
StuI AGGCCT 1 cut(s) 961
StyD4I CCNGG 1 cut(s) 552
StyI CCWWGG 3 cut(s) 148, 289, 1001
TaaI ACNGT 6 cut(s) 17, 166, 240, 483, 1085, 1143
TaqI TCGA 1 cut(s) 548
TasI AATT 7 cut(s) 29, 318, 612, 723, 906, 1178, 1217
TfiI GAWTC 4 cut(s) 245, 392, 626, 862
Tru1I TTAA 4 cut(s) 273, 324, 690, 714
Tru9I TTAA 4 cut(s) 273, 324, 690, 714
TseFI GTSAC 2 cut(s) 152, 1111
TseI GCWGC 1 cut(s) 937
Tsp45I GTSAC 2 cut(s) 152, 1111
TspDTI ATGAA 6 cut(s) 50, 90, 159, 736, 764, 1058
VspI ATTAAT 1 cut(s) 714
XapI RAATTY 1 cut(s) 723
XcmI CCANNNNNNNNNTGG 1 cut(s) 296
XmaJI CCTAGG 1 cut(s) 1001
XmiI GTMKAC 1 cut(s) 505
XmnI GAANNNNTTC 1 cut(s) 1094
XspI CTAG 4 cut(s) 35, 681, 1002, 1172
Zsp2I ATGCAT 1 cut(s) 784
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.