Rmu_sc0009498.1_g000002
ERF Family

mTERF

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0009498.1
OG0000263
Physical Location & Seq
Forward (+)
11754 .. 12413
660 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0009498.1_g000002.1.cds

Sequence Viewer

Length: 660 bp
atgaaggtacgcttcgacaccccagaaaaacccgactctgttattaagctttttaaagactatggactcagtgatgcccacatctctgacattgttaagaaatgcccagttttgcttgtatccaatgctgaaaagaccctttggccaaaactccagtttttcacttccattggcctttcgggcaatgaccttgctcggatcttccgtgtcaacgcaaatatcttgacattgagcttagagagaagtattagaccttgctatgatattatgaaaactctagaaatacctgagcataaggtcccttatttcattagcaactattatatgtttaaccccaaagtattgagcaatgtacctcacaacactttgattctgagagcgcatcaggtgccagaagcgtcatttcctctgtgggtgtgttctcattttcttgcactgtcatttgactctgagaaggttaagacaaatgtcgagaaggtcatcaacatgggatttgacccttcgtctactacattcatgaaagctttgtatgtggtatcggtgaccaatgcagcaaagtggaaacacaagatggaattttatgagaagtggggttggactgaagatgatgtgttgttggcatttagaaagaatcccatgtttatgagcgcttcagtgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
mTERF

Protein Analysis

219

Amino Acids

25.23

Weight (kDa)

9.01

Isoelectric Point (pI)

38.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000263)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G21150 AT1G21150 AT1G21150
fragaria_vesca FvH4_4g17900 FvH4_6g26110 FvH4_6g33880 FvH4_6g33900 FvH4_6g34011 FvH4_6g34011 FvH4_6g34011 FvH4_6g34011 FvH4_6g34030 FvH4_6g34040 FvH4_6g34070 FvH4_6g34070 FvH4_7g12830
malus_domestica MD09G1189800.v1.1 MD09G1189900.v1.1 MD09G1190000.v1.1 MD14G1088800.v1.1 MD14G1088900.v1.1 MD17G1172900.v1.1
pyrus_communis pycom07g03460 pycom09g10650 pycom14g07860
rosa_chinensis RchiOBHm_Chr1g0351891 RchiOBHm_Chr1g0351901 RchiOBHm_Chr2g0143771 RchiOBHm_Chr2g0143861 RchiOBHm_Chr2g0143881 RchiOBHm_Chr2g0143941 RchiOBHm_Chr2g0143951 RchiOBHm_Chr2g0144081 RchiOBHm_Chr2g0144091 RchiOBHm_Chr2g0144211 RchiOBHm_Chr2g0144231 RchiOBHm_Chr2g0144241 RchiOBHm_Chr2g0144291 RchiOBHm_Chr2g0144301 RchiOBHm_Chr2g0144311 RchiOBHm_Chr2g0144331 RchiOBHm_Chr2g0144341 RchiOBHm_Chr4g0422021 RchiOBHm_Chr4g0422031
rosa_laevigata RLG00000007639 RLG00000020063 RLG00000020071 RLG00000020072 RLG00000020074
rosa_multiflora Rmu_co8214640.1_g000001 Rmu_co8471033.1_g000001 Rmu_sc0000789.1_g000002 Rmu_sc0001321.1_g000001 Rmu_sc0004340.1_g000001 Rmu_sc0004897.1_g000001 Rmu_sc0007105.1_g000005 Rmu_sc0009498.1_g000001 Rmu_sc0009498.1_g000002 Rmu_sc0019136.1_g000001 Rmu_sc0020327.1_g000002 Rmu_sc0020327.1_g000003 Rmu_sc0022905.1_g000001 Rmu_sc0032602.1_g000003 Rmu_sc0032602.1_g000004
rosa_roxburghii Rroxscaffold_2G00101380 Rroxscaffold_2G00101390 Rroxscaffold_2G00101400 Rroxscaffold_2G00101410 Rroxscaffold_2G00101480 Rroxscaffold_2G00101490 Rroxscaffold_4G00303470 Rroxscaffold_5G00364130 Rroxscaffold_5G00364150
rosa_rugosa Rorug01G0222600 Rorug02G0384700 Rorug02G0384800 Rorug02G0385800 Rorug02G0385900 Rorug02G0386000 Rorug02G0386000 Rorug02G0386100 Rorug04G0176700 Rorug04G0176800.1
rosa_samantha Rh1AG236500 Rh1AG236600 Rh1BG206900 Rh1CG221000 Rh1CG221100 Rh2BG444800 Rh2BG444900 Rh2BG446600 Rh2BG446700 Rh2BG447600 Rh2BG448100 Rh2BG448400 Rh2BG448500 Rh2BG448700 Rh2BG448800 Rh2CG423500 Rh2CG423600 Rh2CG424800 Rh2CG424900 Rh2CG425100 Rh2CG425200 Rh2DG455200 Rh2DG455300 Rh2DG456900 Rh2DG457000 Rh2DG457100 Rh2DG457600 Rh2DG457900 Rh2DG458000 Rh2DG458300 Rh2DG458400 Rh4AG236100 Rh4AG236200 Rh4BG239200 Rh4CG250900 Rh4CG251100
rosa_wichuraiana Rw0G000400 Rw0G015990 Rw0G017200 Rw1G020580 Rw2G033310 Rw2G035630 Rw2G035640 Rw2G035790 Rw2G035800 Rw2G035840 Rw2G036160 Rw4G019830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 388
AccI GTMKAC 1 cut(s) 506
AclWI GGATC 1 cut(s) 206
AcoI YGGCCR 1 cut(s) 143
AcsI RAATTY 1 cut(s) 575
AcuI CTGAAG 2 cut(s) 621, 636
AfaI GTAC 2 cut(s) 9, 354
AfeI AGCGCT 1 cut(s) 649
AhdI GACNNNNNGTC 1 cut(s) 502
AluBI AGCT 3 cut(s) 49, 234, 524
AluI AGCT 3 cut(s) 49, 234, 524
AlwI GGATC 1 cut(s) 206
Aor51HI AGCGCT 1 cut(s) 649
AoxI GGCC 2 cut(s) 143, 172
ApeKI GCWGC 1 cut(s) 551
ApoI RAATTY 1 cut(s) 575
AspLEI GCGC 2 cut(s) 382, 650
AspS9I GGNCC 1 cut(s) 298
AsuHPI GGTGA 1 cut(s) 553
AvaII GGWCC 1 cut(s) 298
BalI TGGCCA 1 cut(s) 145
BanI GGYRCC 1 cut(s) 388
BbvI GCAGC 1 cut(s) 563
BccI CCATC 1 cut(s) 565
BciVI GTATCC 1 cut(s) 130
BfaI CTAG 1 cut(s) 278
BfoI RGCGCY 1 cut(s) 651
BfuI GTATCC 1 cut(s) 130
BglI GCCNNNNNGGC 1 cut(s) 180
BisI GCNGC 1 cut(s) 552
BlsI GCNGC 1 cut(s) 553
Bme18I GGWCC 1 cut(s) 298
BmeRI GACNNNNNGTC 1 cut(s) 502
BmgT120I GGNCC 1 cut(s) 298
BmiI GGNNCC 2 cut(s) 300, 390
BmrI ACTGGG 1 cut(s) 101
BmsI GCATC 2 cut(s) 64, 391
BmuI ACTGGG 1 cut(s) 101
BoxI GACNNNNGTC 1 cut(s) 467
BpmI CTGGAG 1 cut(s) 137
Bpu10I CCTNAGC 1 cut(s) 288
Bse1I ACTGG 2 cut(s) 107, 154
Bse3DI GCAATG 2 cut(s) 190, 355
BseMI GCAATG 2 cut(s) 190, 355
BseMII CTCAG 4 cut(s) 82, 279, 365, 441
BseNI ACTGG 2 cut(s) 107, 154
BseXI GCAGC 1 cut(s) 563
BshFI GGCC 2 cut(s) 145, 174
BshNI GGYRCC 1 cut(s) 388
BslFI GGGAC 1 cut(s) 284
BsmFI GGGAC 1 cut(s) 284
BsnI GGCC 2 cut(s) 145, 174
Bsp143I GATC 1 cut(s) 198
BspANI GGCC 2 cut(s) 145, 174
BspCNI CTCAG 4 cut(s) 81, 280, 366, 442
BspHI TCATGA 1 cut(s) 516
BspLI GGNNCC 2 cut(s) 300, 390
BspPI GGATC 1 cut(s) 206
BspT107I GGYRCC 1 cut(s) 388
BsrDI GCAATG 2 cut(s) 190, 355
BsrI ACTGG 2 cut(s) 107, 154
BssMI GATC 1 cut(s) 198
Bst4CI ACNGT 1 cut(s) 438
BstAPI GCANNNNNTGC 1 cut(s) 388
BstDEI CTNAG 5 cut(s) 68, 235, 288, 374, 450
BstEII GGTNACC 1 cut(s) 541
BstH2I RGCGCY 1 cut(s) 651
BstHHI GCGC 2 cut(s) 382, 650
BstKTI GATC 1 cut(s) 201
BstMBI GATC 1 cut(s) 198
BstMWI GCNNNNNNNGC 2 cut(s) 180, 388
BstPAI GACNNNNGTC 1 cut(s) 467
BstPI GGTNACC 1 cut(s) 541
BstV1I GCAGC 1 cut(s) 563
BstX2I RGATCY 1 cut(s) 198
BstYI RGATCY 1 cut(s) 198
BsuI GTATCC 1 cut(s) 130
BsuRI GGCC 2 cut(s) 145, 174
BtsIMutI CAGTG 3 cut(s) 76, 434, 660
CciI TCATGA 1 cut(s) 516
CfoI GCGC 2 cut(s) 382, 650
Cfr13I GGNCC 1 cut(s) 298
CseI GACGC 1 cut(s) 387
Csp6I GTAC 2 cut(s) 8, 353
CviAII CATG 3 cut(s) 487, 517, 637
CviJI RGCY 5 cut(s) 49, 145, 174, 234, 524
CviKI_1 RGCY 5 cut(s) 49, 145, 174, 234, 524
CviQI GTAC 2 cut(s) 8, 353
DdeI CTNAG 5 cut(s) 68, 235, 288, 374, 450
DpnI GATC 1 cut(s) 200
DpnII GATC 1 cut(s) 198
DraI TTTAAA 1 cut(s) 55
DriI GACNNNNNGTC 1 cut(s) 502
EaeI YGGCCR 1 cut(s) 143
Eam1105I GACNNNNNGTC 1 cut(s) 502
Eco47I GGWCC 1 cut(s) 298
Eco47III AGCGCT 1 cut(s) 649
Eco57I CTGAAG 2 cut(s) 621, 636
Eco91I GGTNACC 1 cut(s) 541
EcoO109I RGGNCCY 1 cut(s) 298
EcoO65I GGTNACC 1 cut(s) 541
FaeI CATG 3 cut(s) 490, 520, 640
FalI AAGNNNNNCTT 1 cut(s) 28
FaqI GGGAC 1 cut(s) 284
FatI CATG 3 cut(s) 486, 516, 636
FblI GTMKAC 1 cut(s) 506
Fnu4HI GCNGC 1 cut(s) 552
Fsp4HI GCNGC 1 cut(s) 552
FspBI CTAG 1 cut(s) 278
GlaI GCGC 2 cut(s) 381, 649
GluI GCNGC 1 cut(s) 552
GsuI CTGGAG 1 cut(s) 137
HaeII RGCGCY 1 cut(s) 651
HaeIII GGCC 2 cut(s) 145, 174
HgaI GACGC 1 cut(s) 387
HhaI GCGC 2 cut(s) 382, 650
Hin1II CATG 3 cut(s) 490, 520, 640
Hin6I GCGC 2 cut(s) 380, 648
HinP1I GCGC 2 cut(s) 380, 648
HincII GTYRAC 1 cut(s) 211
HindII GTYRAC 1 cut(s) 211
HindIII AAGCTT 2 cut(s) 47, 522
HinfI GANTC 5 cut(s) 35, 66, 370, 446, 631
HphI GGTGA 1 cut(s) 553
Hpy166II GTNNAC 2 cut(s) 211, 507
Hpy188I TCNGA 4 cut(s) 88, 198, 375, 451
Hpy188III TCNNGA 4 cut(s) 223, 278, 472, 517
Hpy8I GTNNAC 2 cut(s) 211, 507
HpyAV CCTTC 3 cut(s) 448, 469, 510
HpyCH4III ACNGT 1 cut(s) 438
HpyCH4V TGCA 2 cut(s) 434, 551
HpyF10VI GCNNNNNNNGC 2 cut(s) 180, 388
HpyF3I CTNAG 5 cut(s) 68, 235, 288, 374, 450
Hsp92II CATG 3 cut(s) 490, 520, 640
HspAI GCGC 2 cut(s) 380, 648
Kzo9I GATC 1 cut(s) 198
LpnPI CCDG 6 cut(s) 36, 120, 167, 300, 371, 405
Lsp1109I GCAGC 1 cut(s) 563
LweI GCATC 2 cut(s) 64, 391
MaeI CTAG 1 cut(s) 278
MaeIII GTNAC 1 cut(s) 541
MalI GATC 1 cut(s) 200
MboI GATC 1 cut(s) 198
MboII GAAGA 2 cut(s) 193, 614
MflI RGATCY 1 cut(s) 198
MlsI TGGCCA 1 cut(s) 145
MluCI AATT 1 cut(s) 575
MluNI TGGCCA 1 cut(s) 145
MlyI GAGTC 3 cut(s) 29, 60, 440
MmeI TCCRAC 1 cut(s) 575
MnlI CCTC 2 cut(s) 366, 417
Mox20I TGGCCA 1 cut(s) 145
MscI TGGCCA 1 cut(s) 145
MseI TTAA 5 cut(s) 45, 54, 96, 330, 459
MslI CAYNNNNRTG 2 cut(s) 485, 641
Msp20I TGGCCA 1 cut(s) 145
MwoI GCNNNNNNNGC 2 cut(s) 180, 388
NdeII GATC 1 cut(s) 198
NlaIII CATG 3 cut(s) 490, 520, 640
NlaIV GGNNCC 2 cut(s) 300, 390
NmuCI GTSAC 1 cut(s) 541
PagI TCATGA 1 cut(s) 516
PcsI WCGNNNNNNNCGW 1 cut(s) 202
PfeI GAWTC 2 cut(s) 370, 631
PkrI GCNGC 1 cut(s) 553
PleI GAGTC 3 cut(s) 29, 60, 440
PpsI GAGTC 3 cut(s) 29, 60, 440
PpuMI RGGWCCY 1 cut(s) 298
PshAI GACNNNNGTC 1 cut(s) 467
Psp5II RGGWCCY 1 cut(s) 298
PspEI GGTNACC 1 cut(s) 541
PspN4I GGNNCC 2 cut(s) 300, 390
PspPI GGNCC 1 cut(s) 298
PspPPI RGGWCCY 1 cut(s) 298
PsuI RGATCY 1 cut(s) 198
RsaI GTAC 2 cut(s) 9, 354
RsaNI GTAC 2 cut(s) 8, 353
RseI CAYNNNNRTG 2 cut(s) 485, 641
SaqAI TTAA 5 cut(s) 45, 54, 96, 330, 459
SatI GCNGC 1 cut(s) 552
Sau3AI GATC 1 cut(s) 198
Sau96I GGNCC 1 cut(s) 298
SchI GAGTC 3 cut(s) 29, 60, 440
SfaNI GCATC 2 cut(s) 64, 391
SinI GGWCC 1 cut(s) 298
SmiMI CAYNNNNRTG 2 cut(s) 485, 641
Sse9I AATT 1 cut(s) 575
SspMI CTAG 1 cut(s) 278
TaaI ACNGT 1 cut(s) 438
TaqI TCGA 2 cut(s) 15, 471
TasI AATT 1 cut(s) 575
TfiI GAWTC 2 cut(s) 370, 631
Tru1I TTAA 5 cut(s) 45, 54, 96, 330, 459
Tru9I TTAA 5 cut(s) 45, 54, 96, 330, 459
TscAI CASTG 3 cut(s) 76, 441, 660
TseFI GTSAC 1 cut(s) 541
TseI GCWGC 1 cut(s) 551
Tsp45I GTSAC 1 cut(s) 541
TspDTI ATGAA 5 cut(s) 17, 284, 298, 505, 533
TspGWI ACGGA 1 cut(s) 194
TspRI CASTG 3 cut(s) 76, 441, 660
VpaK11BI GGWCC 1 cut(s) 298
XapI RAATTY 1 cut(s) 575
XbaI TCTAGA 1 cut(s) 277
XmiI GTMKAC 1 cut(s) 506
XspI CTAG 1 cut(s) 278
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.