MD17G1172900.v1.1
ERF Family

Mitochondrial transcription termination factor family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0000263
Physical Location & Seq
Reverse (-)
17832214 .. 17833440
1227 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1172900.v1.1.491

Sequence Viewer

Length: 1227 bp
ATGATTCGTTATTGTTTTAAAAGATTGCAATTAGTGCTTCTAAGTTGTAAAATTGTTGGTGATTCAGTGACCCGTTTGAAATTTATCCGAAAAGAAACTATTTTGATCAGACCATACTCATCGAAATCATTGCTAGTTGCTGAAAAGGTTAAACTAGGAGAAGAAGGTGGGGATTTTACAGTGTCTTACCTTACAAATTCATGTGGGTTGTCCCCAAAACATGCTCTTTCTGCGTCCAAGAAGGTTCATTTTGATACCCCGGAAGGACCCAATTCCGTTCTTAATCTTCTTGAAGATCATGGATTCGATAAAACCCACATTTCTCAACTTGTTAAGAAACGCCCACACCTGCTACTATTCAATCCTGAGAAGACCCTTTTGCCCAAACTTGAGTTTTTGGGTTCCATTGGCCTTTCAGGCACTGGCCTTGCTGAGGTTATCTGCTTCAACCCGGACATATTGAAAAGAAGCCTAGAGAAATGTATCATACCTTGTTACAATGTCGTCAAAAATCTGCATCTCTTAGACGAGGACTATGTTGCTCGTTTCTTTAAGAACTTTCAGTGGATACTTTCAGCCAAATTGGTAAGCAATGTTGCTCCCAATATTTCAGTTCTGAGAAAACTTGATGTGCCAGAAGCCTTAATCTCCTTGTGCGTCGTCCGATATCTTTCTGTAGTGTTCCTTGAAACTGAGGAGTTTAAGGAAATTGTCAAGAAGATCATGAGTATGGGGGTCTCCCCTTCGTCTGAAGTATTCACGAGAGCACTACATGTGAATGCTCTGCGGGATGCATCAGAATGGGAACAGAAGATGGAACTTTATAGGAAGTGGGGTTGGACCGAGGATGATTTTATGTTGGCATTTAGAAGGAATCCTTTATTTATGGATTTCACAGAGAAGAACTTTTCGAGTAAAATGGACTTTCTTGTGAACAAAATGGGTTGGCAGCCTGCCGATGTGGCTGGAAGTCCAACTGTTGTAACTTATAGTTTGGAGAAGTATATCATCCCAAGGTGTTCAGTTATTAGAATTCTCTTGTCGAAGGGCTTGATATCGAAGGGAGAATTTATGTTAGGTACATTTATCATGAACCCAAAGTCGTACTTCTTGAATAGGTTTGTGATCAAATATCAAGAGCAAGTGCCTGAATTACTGAGCATCTTTCAAGGGGAAATGGGTCTTGCAGAACTGGGCTTAGGATTTGAGCAAAAAGAGGTCGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
mTERF

Protein Analysis

409

Amino Acids

46.56

Weight (kDa)

8.82

Isoelectric Point (pI)

35.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
mTERF PF02536 94 - 301 1.8e-20 mTERF
mTERF PF02536 266 - 355 1.5e-13 mTERF
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000263)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G21150 AT1G21150 AT1G21150
fragaria_vesca FvH4_4g17900 FvH4_6g26110 FvH4_6g33880 FvH4_6g33900 FvH4_6g34011 FvH4_6g34011 FvH4_6g34011 FvH4_6g34011 FvH4_6g34030 FvH4_6g34040 FvH4_6g34070 FvH4_6g34070 FvH4_7g12830
malus_domestica MD09G1189800.v1.1 MD09G1189900.v1.1 MD09G1190000.v1.1 MD14G1088800.v1.1 MD14G1088900.v1.1 MD17G1172900.v1.1
pyrus_communis pycom07g03460 pycom09g10650 pycom14g07860
rosa_chinensis RchiOBHm_Chr1g0351891 RchiOBHm_Chr1g0351901 RchiOBHm_Chr2g0143771 RchiOBHm_Chr2g0143861 RchiOBHm_Chr2g0143881 RchiOBHm_Chr2g0143941 RchiOBHm_Chr2g0143951 RchiOBHm_Chr2g0144081 RchiOBHm_Chr2g0144091 RchiOBHm_Chr2g0144211 RchiOBHm_Chr2g0144231 RchiOBHm_Chr2g0144241 RchiOBHm_Chr2g0144291 RchiOBHm_Chr2g0144301 RchiOBHm_Chr2g0144311 RchiOBHm_Chr2g0144331 RchiOBHm_Chr2g0144341 RchiOBHm_Chr4g0422021 RchiOBHm_Chr4g0422031
rosa_laevigata RLG00000007639 RLG00000020063 RLG00000020071 RLG00000020072 RLG00000020074
rosa_multiflora Rmu_co8214640.1_g000001 Rmu_co8471033.1_g000001 Rmu_sc0000789.1_g000002 Rmu_sc0001321.1_g000001 Rmu_sc0004340.1_g000001 Rmu_sc0004897.1_g000001 Rmu_sc0007105.1_g000005 Rmu_sc0009498.1_g000001 Rmu_sc0009498.1_g000002 Rmu_sc0019136.1_g000001 Rmu_sc0020327.1_g000002 Rmu_sc0020327.1_g000003 Rmu_sc0022905.1_g000001 Rmu_sc0032602.1_g000003 Rmu_sc0032602.1_g000004
rosa_roxburghii Rroxscaffold_2G00101380 Rroxscaffold_2G00101390 Rroxscaffold_2G00101400 Rroxscaffold_2G00101410 Rroxscaffold_2G00101480 Rroxscaffold_2G00101490 Rroxscaffold_4G00303470 Rroxscaffold_5G00364130 Rroxscaffold_5G00364150
rosa_rugosa Rorug01G0222600 Rorug02G0384700 Rorug02G0384800 Rorug02G0385800 Rorug02G0385900 Rorug02G0386000 Rorug02G0386000 Rorug02G0386100 Rorug04G0176700 Rorug04G0176800.1
rosa_samantha Rh1AG236500 Rh1AG236600 Rh1BG206900 Rh1CG221000 Rh1CG221100 Rh2BG444800 Rh2BG444900 Rh2BG446600 Rh2BG446700 Rh2BG447600 Rh2BG448100 Rh2BG448400 Rh2BG448500 Rh2BG448700 Rh2BG448800 Rh2CG423500 Rh2CG423600 Rh2CG424800 Rh2CG424900 Rh2CG425100 Rh2CG425200 Rh2DG455200 Rh2DG455300 Rh2DG456900 Rh2DG457000 Rh2DG457100 Rh2DG457600 Rh2DG457900 Rh2DG458000 Rh2DG458300 Rh2DG458400 Rh4AG236100 Rh4AG236200 Rh4BG239200 Rh4CG250900 Rh4CG251100
rosa_wichuraiana Rw0G000400 Rw0G015990 Rw0G017200 Rw1G020580 Rw2G033310 Rw2G035630 Rw2G035640 Rw2G035790 Rw2G035800 Rw2G035840 Rw2G036160 Rw4G019830

Restriction Enzyme Sites

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Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 357
Acc36I ACCTGC 1 cut(s) 357
AciI CCGC 1 cut(s) 787
AcsI RAATTY 4 cut(s) 80, 196, 1032, 1067
AcuI CTGAAG 1 cut(s) 771
AfaI GTAC 2 cut(s) 1081, 1106
AfiI CCNNNNNNNGG 1 cut(s) 433
AflIII ACRYGT 1 cut(s) 772
AgsI TTSAA 8 cut(s) 79, 293, 361, 448, 463, 689, 1114, 1169
Alw21I GWGCWC 1 cut(s) 769
Alw26I GTCTC 1 cut(s) 742
AlwNI CAGNNNCTG 1 cut(s) 422
AoxI GGCC 2 cut(s) 409, 424
ApeKI GCWGC 1 cut(s) 949
ApoI RAATTY 4 cut(s) 80, 196, 1032, 1067
AspS9I GGNCC 2 cut(s) 266, 840
AsuC2I CCSGG 2 cut(s) 260, 452
AsuHPI GGTGA 1 cut(s) 71
AvaII GGWCC 2 cut(s) 266, 840
BauI CACGAG 1 cut(s) 760
BbsI GAAGAC 1 cut(s) 377
Bbv12I GWGCWC 1 cut(s) 769
BbvCI CCTCAGC 1 cut(s) 432
BbvI GCAGC 1 cut(s) 961
BccI CCATC 1 cut(s) 808
BcgI CGANNNNNNTGC 2 cut(s) 112, 146
BciVI GTATCC 1 cut(s) 561
BclI TGATCA 2 cut(s) 105, 1125
BcnI CCSGG 2 cut(s) 260, 452
BcoDI GTCTC 1 cut(s) 742
BfaI CTAG 3 cut(s) 134, 155, 473
BfmI CTRYAG 1 cut(s) 675
BfuAI ACCTGC 1 cut(s) 357
BfuI GTATCC 1 cut(s) 561
BglI GCCNNNNNGGC 2 cut(s) 417, 962
BisI GCNGC 1 cut(s) 950
BlsI GCNGC 1 cut(s) 951
Bme1390I CCNGG 2 cut(s) 260, 452
Bme18I GGWCC 2 cut(s) 266, 840
BmgT120I GGNCC 2 cut(s) 266, 840
BmiI GGNNCC 2 cut(s) 268, 403
BmrFI CCNGG 2 cut(s) 260, 452
BmrI ACTGGG 1 cut(s) 1202
BmsI GCATC 4 cut(s) 526, 781, 803, 1170
BmuI ACTGGG 1 cut(s) 1202
BpiI GAAGAC 1 cut(s) 377
Bpu10I CCTNAGC 2 cut(s) 432, 1198
BpuEI CTTGAG 1 cut(s) 410
BpuMI CCSGG 2 cut(s) 260, 452
BsaI GGTCTC 1 cut(s) 742
BsaJI CCNNGG 3 cut(s) 258, 843, 1013
Bsc4I CCNNNNNNNGG 1 cut(s) 433
Bse1I ACTGG 2 cut(s) 427, 1197
Bse3DI GCAATG 2 cut(s) 128, 598
BseDI CCNNGG 3 cut(s) 258, 843, 1013
BseGI GGATG 3 cut(s) 796, 853, 1008
BseLI CCNNNNNNNGG 1 cut(s) 433
BseMI GCAATG 2 cut(s) 128, 598
BseMII CTCAG 5 cut(s) 357, 423, 608, 684, 1148
BseNI ACTGG 2 cut(s) 427, 1197
BseRI GAGGAG 1 cut(s) 710
BseXI GCAGC 1 cut(s) 961
BshFI GGCC 2 cut(s) 411, 426
BsiHKAI GWGCWC 1 cut(s) 769
BsiSI CCGG 2 cut(s) 260, 452
BslFI GGGAC 1 cut(s) 196
BslI CCNNNNNNNGG 1 cut(s) 433
BsmAI GTCTC 1 cut(s) 742
BsmFI GGGAC 1 cut(s) 196
BsmI GAATGC 1 cut(s) 784
BsnI GGCC 2 cut(s) 411, 426
Bso31I GGTCTC 1 cut(s) 742
Bsp1286I GDGCHC 1 cut(s) 769
Bsp143I GATC 4 cut(s) 105, 295, 720, 1125
BspACI CCGC 1 cut(s) 787
BspANI GGCC 2 cut(s) 411, 426
BspCNI CTCAG 5 cut(s) 358, 424, 609, 685, 1149
BspHI TCATGA 2 cut(s) 723, 1089
BspLI GGNNCC 2 cut(s) 268, 403
BspMI ACCTGC 1 cut(s) 357
BspTNI GGTCTC 1 cut(s) 742
BsrDI GCAATG 2 cut(s) 128, 598
BsrI ACTGG 2 cut(s) 427, 1197
BssECI CCNNGG 3 cut(s) 258, 843, 1013
BssMI GATC 4 cut(s) 105, 295, 720, 1125
BssSI CACGAG 1 cut(s) 760
BssT1I CCWWGG 1 cut(s) 1013
Bst2BI CACGAG 1 cut(s) 760
Bst4CI ACNGT 2 cut(s) 181, 979
BstAPI GCANNNNNTGC 1 cut(s) 34
BstC8I GCNNGC 1 cut(s) 954
BstDEI CTNAG 8 cut(s) 41, 366, 432, 523, 617, 693, 1157, 1198
BstENI CCTNNNNNAGG 1 cut(s) 431
BstF5I GGATG 3 cut(s) 796, 853, 1008
BstKTI GATC 4 cut(s) 108, 298, 723, 1128
BstMAI GTCTC 1 cut(s) 742
BstMBI GATC 4 cut(s) 105, 295, 720, 1125
BstMWI GCNNNNNNNGC 4 cut(s) 34, 230, 417, 962
BstNSI RCATGY 2 cut(s) 224, 776
BstSCI CCNGG 2 cut(s) 258, 450
BstSFI CTRYAG 1 cut(s) 675
BstV1I GCAGC 1 cut(s) 961
BstV2I GAAGAC 1 cut(s) 377
BsuI GTATCC 1 cut(s) 561
BsuRI GGCC 2 cut(s) 411, 426
BtsCI GGATG 3 cut(s) 796, 853, 1008
BtsIMutI CAGTG 4 cut(s) 72, 186, 420, 569
BveI ACCTGC 1 cut(s) 357
Cac8I GCNNGC 1 cut(s) 954
CaiI CAGNNNCTG 1 cut(s) 422
CciI TCATGA 2 cut(s) 723, 1089
Cfr13I GGNCC 2 cut(s) 266, 840
CseI GACGC 2 cut(s) 222, 646
Csp6I GTAC 2 cut(s) 1080, 1105
CviAII CATG 6 cut(s) 201, 221, 299, 724, 773, 1090
CviJI RGCY 9 cut(s) 411, 426, 471, 578, 641, 952, 965, 1050, 1197
CviKI_1 RGCY 9 cut(s) 411, 426, 471, 578, 641, 952, 965, 1050, 1197
CviQI GTAC 2 cut(s) 1080, 1105
DdeI CTNAG 8 cut(s) 41, 366, 432, 523, 617, 693, 1157, 1198
DpnI GATC 4 cut(s) 107, 297, 722, 1127
DpnII GATC 4 cut(s) 105, 295, 720, 1125
DraI TTTAAA 1 cut(s) 19
Eco130I CCWWGG 1 cut(s) 1013
Eco31I GGTCTC 1 cut(s) 742
Eco32I GATATC 2 cut(s) 668, 1056
Eco47I GGWCC 2 cut(s) 266, 840
Eco57I CTGAAG 1 cut(s) 771
EcoNI CCTNNNNNAGG 1 cut(s) 431
EcoO109I RGGNCCY 1 cut(s) 266
EcoRI GAATTC 1 cut(s) 1032
EcoRV GATATC 2 cut(s) 668, 1056
EcoT14I CCWWGG 1 cut(s) 1013
EcoT22I ATGCAT 1 cut(s) 796
ErhI CCWWGG 1 cut(s) 1013
FaeI CATG 6 cut(s) 204, 224, 302, 727, 776, 1093
FalI AAGNNNNNCTT 4 cut(s) 862, 894, 1091, 1123
FaqI GGGAC 1 cut(s) 196
FatI CATG 6 cut(s) 200, 220, 298, 723, 772, 1089
FauI CCCGC 1 cut(s) 780
FbaI TGATCA 2 cut(s) 105, 1125
Fnu4HI GCNGC 1 cut(s) 950
FokI GGATG 3 cut(s) 803, 860, 995
Fsp4HI GCNGC 1 cut(s) 950
FspBI CTAG 3 cut(s) 134, 155, 473
GluI GCNGC 1 cut(s) 950
HaeIII GGCC 2 cut(s) 411, 426
HapII CCGG 2 cut(s) 260, 452
HgaI GACGC 2 cut(s) 222, 646
Hin1II CATG 6 cut(s) 204, 224, 302, 727, 776, 1093
HinfI GANTC 4 cut(s) 4, 62, 303, 874
HpaII CCGG 2 cut(s) 260, 452
HphI GGTGA 1 cut(s) 71
Hpy166II GTNNAC 1 cut(s) 934
Hpy188I TCNGA 6 cut(s) 89, 110, 618, 665, 751, 799
Hpy188III TCNNGA 8 cut(s) 290, 365, 715, 724, 760, 1090, 1111, 1136
Hpy8I GTNNAC 1 cut(s) 934
Hpy99I CGWCG 1 cut(s) 662
HpyAV CCTTC 7 cut(s) 158, 235, 257, 753, 864, 1039, 1054
HpyCH4III ACNGT 2 cut(s) 181, 979
HpyCH4V TGCA 4 cut(s) 28, 517, 794, 1187
HpyF10VI GCNNNNNNNGC 4 cut(s) 34, 230, 417, 962
HpyF3I CTNAG 8 cut(s) 41, 366, 432, 523, 617, 693, 1157, 1198
Hsp92II CATG 6 cut(s) 204, 224, 302, 727, 776, 1093
Ksp22I TGATCA 2 cut(s) 105, 1125
Kzo9I GATC 4 cut(s) 105, 295, 720, 1125
LmnI GCTCC 1 cut(s) 604
Lsp1109I GCAGC 1 cut(s) 961
LweI GCATC 4 cut(s) 526, 781, 803, 1170
MaeI CTAG 3 cut(s) 134, 155, 473
MaeIII GTNAC 3 cut(s) 67, 494, 982
MalI GATC 4 cut(s) 107, 297, 722, 1127
MboI GATC 4 cut(s) 105, 295, 720, 1125
MboII GAAGA 7 cut(s) 173, 278, 305, 382, 730, 823, 913
MhlI GDGCHC 1 cut(s) 769
MmeI TCCRAC 2 cut(s) 818, 998
MnlI CCTC 5 cut(s) 427, 523, 688, 838, 1210
Mph1103I ATGCAT 1 cut(s) 796
MseI TTAA 7 cut(s) 18, 150, 282, 333, 552, 644, 702
MslI CAYNNNNRTG 3 cut(s) 728, 777, 799
MspI CCGG 2 cut(s) 260, 452
MspR9I CCNGG 2 cut(s) 260, 452
Mva1269I GAATGC 1 cut(s) 784
MwoI GCNNNNNNNGC 4 cut(s) 34, 230, 417, 962
NciI CCSGG 2 cut(s) 260, 452
NdeII GATC 4 cut(s) 105, 295, 720, 1125
NlaIII CATG 6 cut(s) 204, 224, 302, 727, 776, 1093
NlaIV GGNNCC 2 cut(s) 268, 403
NmuCI GTSAC 1 cut(s) 67
NsiI ATGCAT 1 cut(s) 796
NspI RCATGY 2 cut(s) 224, 776
PagI TCATGA 2 cut(s) 723, 1089
PaqCI CACCTGC 1 cut(s) 357
PciI ACATGT 1 cut(s) 772
PctI GAATGC 1 cut(s) 784
PfeI GAWTC 4 cut(s) 4, 62, 303, 874
PkrI GCNGC 1 cut(s) 951
PpuMI RGGWCCY 1 cut(s) 266
PscI ACATGT 1 cut(s) 772
Psp5II RGGWCCY 1 cut(s) 266
PspN4I GGNNCC 2 cut(s) 268, 403
PspPI GGNCC 2 cut(s) 266, 840
PspPPI RGGWCCY 1 cut(s) 266
PstNI CAGNNNCTG 1 cut(s) 422
RsaI GTAC 2 cut(s) 1081, 1106
RsaNI GTAC 2 cut(s) 1080, 1105
RseI CAYNNNNRTG 3 cut(s) 728, 777, 799
SaqAI TTAA 7 cut(s) 18, 150, 282, 333, 552, 644, 702
SatI GCNGC 1 cut(s) 950
Sau3AI GATC 4 cut(s) 105, 295, 720, 1125
Sau96I GGNCC 2 cut(s) 266, 840
ScrFI CCNGG 2 cut(s) 260, 452
SduI GDGCHC 1 cut(s) 769
SfaNI GCATC 4 cut(s) 526, 781, 803, 1170
SfcI CTRYAG 1 cut(s) 675
SinI GGWCC 2 cut(s) 266, 840
SmiMI CAYNNNNRTG 3 cut(s) 728, 777, 799
SmlI CTYRAG 1 cut(s) 389
SmoI CTYRAG 1 cut(s) 389
SsiI CCGC 1 cut(s) 787
SspI AATATT 1 cut(s) 607
SspMI CTAG 3 cut(s) 134, 155, 473
StyD4I CCNGG 2 cut(s) 258, 450
StyI CCWWGG 1 cut(s) 1013
TaaI ACNGT 2 cut(s) 181, 979
TaqI TCGA 6 cut(s) 122, 306, 911, 1043, 1058, 1221
TaqII GACCGA 1 cut(s) 857
TfiI GAWTC 4 cut(s) 4, 62, 303, 874
Tru1I TTAA 7 cut(s) 18, 150, 282, 333, 552, 644, 702
Tru9I TTAA 7 cut(s) 18, 150, 282, 333, 552, 644, 702
TscAI CASTG 4 cut(s) 72, 186, 427, 569
TseFI GTSAC 1 cut(s) 67
TseI GCWGC 1 cut(s) 949
Tsp45I GTSAC 1 cut(s) 67
TspDTI ATGAA 3 cut(s) 189, 236, 1106
TspGWI ACGGA 1 cut(s) 265
TspRI CASTG 4 cut(s) 72, 186, 427, 569
VpaK11BI GGWCC 2 cut(s) 266, 840
XagI CCTNNNNNAGG 1 cut(s) 431
XapI RAATTY 4 cut(s) 80, 196, 1032, 1067
XceI RCATGY 2 cut(s) 224, 776
XspI CTAG 3 cut(s) 134, 155, 473
Zsp2I ATGCAT 1 cut(s) 796
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.