Rh1BG206900
ERF Family

mTERF

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0000263
Physical Location & Seq
Reverse (-)
32505597 .. 32505893
297 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG206900.1

Sequence Viewer

Length: 297 bp
ATGGGTTGGCAGCCTGCAGATGTGGCTGGGGATCCATATGTTTTAACTTATAGTTTGGAGAAGCGGATCATACCTACATGTTCAGTTATTAGAGTTCTCCTGTTGAAGGGCTTAATAACGAAGGGAGAGTGTTCCTTGGTTTCCATTCTGAAGAAAAGTGAGAAGTACTTGTTGAATAAGTTTGTGCTCAAATATCAAGAGCAAGTACCTGAACTATTGAGCATCTATCAAGGCAAAATGGGTCTTGCAGACCTCGGCTTAGGATTTGAGGACAGAGCTAGACTGAATCATTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
mTERF

Protein Analysis

98

Amino Acids

11.04

Weight (kDa)

8.93

Isoelectric Point (pI)

32.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
mTERF PF02536 1 - 55 2.2e-07 mTERF
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000263)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G21150 AT1G21150 AT1G21150
fragaria_vesca FvH4_4g17900 FvH4_6g26110 FvH4_6g33880 FvH4_6g33900 FvH4_6g34011 FvH4_6g34011 FvH4_6g34011 FvH4_6g34011 FvH4_6g34030 FvH4_6g34040 FvH4_6g34070 FvH4_6g34070 FvH4_7g12830
malus_domestica MD09G1189800.v1.1 MD09G1189900.v1.1 MD09G1190000.v1.1 MD14G1088800.v1.1 MD14G1088900.v1.1 MD17G1172900.v1.1
pyrus_communis pycom07g03460 pycom09g10650 pycom14g07860
rosa_chinensis RchiOBHm_Chr1g0351891 RchiOBHm_Chr1g0351901 RchiOBHm_Chr2g0143771 RchiOBHm_Chr2g0143861 RchiOBHm_Chr2g0143881 RchiOBHm_Chr2g0143941 RchiOBHm_Chr2g0143951 RchiOBHm_Chr2g0144081 RchiOBHm_Chr2g0144091 RchiOBHm_Chr2g0144211 RchiOBHm_Chr2g0144231 RchiOBHm_Chr2g0144241 RchiOBHm_Chr2g0144291 RchiOBHm_Chr2g0144301 RchiOBHm_Chr2g0144311 RchiOBHm_Chr2g0144331 RchiOBHm_Chr2g0144341 RchiOBHm_Chr4g0422021 RchiOBHm_Chr4g0422031
rosa_laevigata RLG00000007639 RLG00000020063 RLG00000020071 RLG00000020072 RLG00000020074
rosa_multiflora Rmu_co8214640.1_g000001 Rmu_co8471033.1_g000001 Rmu_sc0000789.1_g000002 Rmu_sc0001321.1_g000001 Rmu_sc0004340.1_g000001 Rmu_sc0004897.1_g000001 Rmu_sc0007105.1_g000005 Rmu_sc0009498.1_g000001 Rmu_sc0009498.1_g000002 Rmu_sc0019136.1_g000001 Rmu_sc0020327.1_g000002 Rmu_sc0020327.1_g000003 Rmu_sc0022905.1_g000001 Rmu_sc0032602.1_g000003 Rmu_sc0032602.1_g000004
rosa_roxburghii Rroxscaffold_2G00101380 Rroxscaffold_2G00101390 Rroxscaffold_2G00101400 Rroxscaffold_2G00101410 Rroxscaffold_2G00101480 Rroxscaffold_2G00101490 Rroxscaffold_4G00303470 Rroxscaffold_5G00364130 Rroxscaffold_5G00364150
rosa_rugosa Rorug01G0222600 Rorug02G0384700 Rorug02G0384800 Rorug02G0385800 Rorug02G0385900 Rorug02G0386000 Rorug02G0386000 Rorug02G0386100 Rorug04G0176700 Rorug04G0176800.1
rosa_samantha Rh1AG236500 Rh1AG236600 Rh1BG206900 Rh1CG221000 Rh1CG221100 Rh2BG444800 Rh2BG444900 Rh2BG446600 Rh2BG446700 Rh2BG447600 Rh2BG448100 Rh2BG448400 Rh2BG448500 Rh2BG448700 Rh2BG448800 Rh2CG423500 Rh2CG423600 Rh2CG424800 Rh2CG424900 Rh2CG425100 Rh2CG425200 Rh2DG455200 Rh2DG455300 Rh2DG456900 Rh2DG457000 Rh2DG457100 Rh2DG457600 Rh2DG457900 Rh2DG458000 Rh2DG458300 Rh2DG458400 Rh4AG236100 Rh4AG236200 Rh4BG239200 Rh4CG250900 Rh4CG251100
rosa_wichuraiana Rw0G000400 Rw0G015990 Rw0G017200 Rw1G020580 Rw2G033310 Rw2G035630 Rw2G035640 Rw2G035790 Rw2G035800 Rw2G035840 Rw2G036160 Rw4G019830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 64
AclWI GGATC 3 cut(s) 26, 39, 74
AcuI CTGAAG 1 cut(s) 170
AfaI GTAC 2 cut(s) 167, 207
AfiI CCNNNNNNNGG 1 cut(s) 106
AflIII ACRYGT 1 cut(s) 77
AgsI TTSAA 2 cut(s) 106, 175
AluBI AGCT 1 cut(s) 278
AluI AGCT 1 cut(s) 278
Alw21I GWGCWC 1 cut(s) 189
AlwI GGATC 3 cut(s) 26, 39, 74
ApeKI GCWGC 1 cut(s) 10
BamHI GGATCC 1 cut(s) 31
Bbv12I GWGCWC 1 cut(s) 189
BbvI GCAGC 1 cut(s) 22
BfaI CTAG 1 cut(s) 279
BfmI CTRYAG 1 cut(s) 15
BisI GCNGC 1 cut(s) 11
BlsI GCNGC 1 cut(s) 12
BmcAI AGTACT 1 cut(s) 167
BmiI GGNNCC 1 cut(s) 33
BmsI GCATC 1 cut(s) 231
Bpu10I CCTNAGC 1 cut(s) 259
BsaJI CCNNGG 2 cut(s) 135, 253
Bsc4I CCNNNNNNNGG 1 cut(s) 106
BseDI CCNNGG 2 cut(s) 135, 253
BseLI CCNNNNNNNGG 1 cut(s) 106
BseXI GCAGC 1 cut(s) 22
BseYI CCCAGC 1 cut(s) 26
BsiHKAI GWGCWC 1 cut(s) 189
BslI CCNNNNNNNGG 1 cut(s) 106
Bsp1286I GDGCHC 1 cut(s) 189
Bsp143I GATC 2 cut(s) 31, 66
BspACI CCGC 1 cut(s) 64
BspLI GGNNCC 1 cut(s) 33
BspMAI CTGCAG 1 cut(s) 19
BspPI GGATC 3 cut(s) 26, 39, 74
BssECI CCNNGG 2 cut(s) 135, 253
BssMI GATC 2 cut(s) 31, 66
BssT1I CCWWGG 1 cut(s) 135
BstC8I GCNNGC 1 cut(s) 15
BstDEI CTNAG 1 cut(s) 259
BstENI CCTNNNNNAGG 1 cut(s) 104
BstKTI GATC 2 cut(s) 34, 69
BstMBI GATC 2 cut(s) 31, 66
BstMWI GCNNNNNNNGC 1 cut(s) 23
BstNSI RCATGY 1 cut(s) 81
BstSFI CTRYAG 1 cut(s) 15
BstV1I GCAGC 1 cut(s) 22
BstX2I RGATCY 1 cut(s) 31
BstYI RGATCY 1 cut(s) 31
Cac8I GCNNGC 1 cut(s) 15
Csp6I GTAC 2 cut(s) 166, 206
CviAII CATG 1 cut(s) 78
CviJI RGCY 5 cut(s) 13, 26, 111, 258, 278
CviKI_1 RGCY 5 cut(s) 13, 26, 111, 258, 278
CviQI GTAC 2 cut(s) 166, 206
DdeI CTNAG 1 cut(s) 259
DpnI GATC 2 cut(s) 33, 68
DpnII GATC 2 cut(s) 31, 66
Eco130I CCWWGG 1 cut(s) 135
Eco57I CTGAAG 1 cut(s) 170
EcoNI CCTNNNNNAGG 1 cut(s) 104
EcoT14I CCWWGG 1 cut(s) 135
ErhI CCWWGG 1 cut(s) 135
FaeI CATG 1 cut(s) 81
FaiI YATR 5 cut(s) 37, 39, 51, 71, 79
FatI CATG 1 cut(s) 77
FauNDI CATATG 1 cut(s) 37
Fnu4HI GCNGC 1 cut(s) 11
Fsp4HI GCNGC 1 cut(s) 11
FspBI CTAG 1 cut(s) 279
GluI GCNGC 1 cut(s) 11
GsaI CCCAGC 1 cut(s) 30
Hin1II CATG 1 cut(s) 81
HinfI GANTC 1 cut(s) 286
Hpy188I TCNGA 1 cut(s) 150
Hpy188III TCNNGA 1 cut(s) 197
HpyAV CCTTC 2 cut(s) 100, 115
HpyCH4V TGCA 2 cut(s) 17, 248
HpyF10VI GCNNNNNNNGC 1 cut(s) 23
HpyF3I CTNAG 1 cut(s) 259
Hsp92II CATG 1 cut(s) 81
Kzo9I GATC 2 cut(s) 31, 66
LpnPI CCDG 4 cut(s) 12, 27, 113, 222
Lsp1109I GCAGC 1 cut(s) 22
LweI GCATC 1 cut(s) 231
MaeI CTAG 1 cut(s) 279
MalI GATC 2 cut(s) 33, 68
MboI GATC 2 cut(s) 31, 66
MboII GAAGA 1 cut(s) 163
MflI RGATCY 1 cut(s) 31
MhlI GDGCHC 1 cut(s) 189
MnlI CCTC 2 cut(s) 262, 263
MseI TTAA 2 cut(s) 44, 113
MwoI GCNNNNNNNGC 1 cut(s) 23
NdeI CATATG 1 cut(s) 37
NdeII GATC 2 cut(s) 31, 66
NlaIII CATG 1 cut(s) 81
NlaIV GGNNCC 1 cut(s) 33
NmeAIII GCCGAG 1 cut(s) 234
NspI RCATGY 1 cut(s) 81
PciI ACATGT 1 cut(s) 77
PfeI GAWTC 1 cut(s) 286
PkrI GCNGC 1 cut(s) 12
PscI ACATGT 1 cut(s) 77
PspFI CCCAGC 1 cut(s) 26
PspN4I GGNNCC 1 cut(s) 33
PstI CTGCAG 1 cut(s) 19
PsuI RGATCY 1 cut(s) 31
RsaI GTAC 2 cut(s) 167, 207
RsaNI GTAC 2 cut(s) 166, 206
SaqAI TTAA 2 cut(s) 44, 113
SatI GCNGC 1 cut(s) 11
Sau3AI GATC 2 cut(s) 31, 66
ScaI AGTACT 1 cut(s) 167
SduI GDGCHC 1 cut(s) 189
SetI ASST 4 cut(s) 76, 211, 255, 280
SfaNI GCATC 1 cut(s) 231
SfcI CTRYAG 1 cut(s) 15
SsiI CCGC 1 cut(s) 64
SspMI CTAG 1 cut(s) 279
StyI CCWWGG 1 cut(s) 135
TatI WGTACW 1 cut(s) 165
TfiI GAWTC 1 cut(s) 286
Tru1I TTAA 2 cut(s) 44, 113
Tru9I TTAA 2 cut(s) 44, 113
TseI GCWGC 1 cut(s) 10
XagI CCTNNNNNAGG 1 cut(s) 104
XceI RCATGY 1 cut(s) 81
XspI CTAG 1 cut(s) 279
ZrmI AGTACT 1 cut(s) 167
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.