Rw0G015990
ERF Family

mTERF

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00749
OG0000263
Physical Location & Seq
Reverse (-)
2758 .. 3948
1191 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G015990.1

Sequence Viewer

Length: 1191 bp
ATGTTTGGTCTTTATTGTAGAACAAGATTGCAATTAGTATTTCCAAGTTATCTCTGCTTTCGAAAGACGCCTCCTTTTATCACATCATTTTCGTCAAAATCATTATCAGGTGATGAAAAAGGTCGCTCTTTTACAGTTTCATACTTTGTGAACTCATTTGGGTTCTCCCCAGAACTTGCTCTTTTTTTGTCCAAGAAACATAAGATACAGTTTGAATCCCGAGAAAAACCAGACTCAGTTATTAAGCTTCTGAAACACTATGGACTCAATGGTACCCATGTCTCTGAAATAGCTAGGAAACGCCCACACCTGTTTTTATTCAATGCTGAGAAGACCCTTTTGCCCAAACTCGAGTTTTTTTGTTCTATTGGCATTTCAGGCACTGTCCTTGCTAGGCTCCTTTGTAACAACCCAAGAATCTTGGCATTAAGCTTAGAGAGAAGTCTCAGACCTTGTTATGATCTCACCAAAACTCTACGTATCCCCGACGAAAAGCTCCGTTATTTTTTTGGTGACTTCAGGCGGAATAGTTTGGAAAGACTCTGCATTGTTGCTCGAAATATTCCGGTGCTGACAGCACATGATGTGCCACAATCCTCATTTCCTCTGTGGGTGCCCTTTTATTTTAGGGCACTATCCTTTGACTCTGAGAAGGTTAAGACAAATCTTCACAAGGTCATTAGCATGGGATTCGACCCTTCATCTGCCACATTCATGAAAGCACTGTACGTGATATCAGTGACGGATACATCGAAATGGGAACAGAAGATGGAATTTTATAGCAAGTGGGGTTGGACTGAAGATGATGTGTTGTTGGCATTTAGAAGGAGTCCCTTGTTTATGTCCTTCAGTGAGAAGATTATTTCCAGTAAAATGGATTTTTATGTGAATACATTGGGTTGCCAGCCCTCAGATGTGGCTGGATGTCCAGATGTTCTAACTTATAGTTTGGAGAAGCGAATCATACCTAGGTGTTCAGTTATCAGACTTCTCCAGTTAGAGGGCTTAATCGCAAAGGAAGATGCATCTATAATTACCATTCTGCAGAAAAGTGAGAAGTGGTTCTTGGAAATGTTTGTGATCAAATATCAAGAGCAAGTACCAGAATTGCTGACATCTTACAAGGAAAAAATCAGTCTTGCAAAGTTTGGCTTAGGATTAGATGAAAGAGGTGGAGTGAAACAAGTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
mTERF

Protein Analysis

396

Amino Acids

45.61

Weight (kDa)

9.37

Isoelectric Point (pI)

47.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
mTERF PF02536 81 - 163 1.2e-10 mTERF
mTERF PF02536 212 - 355 1.6e-17 mTERF
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000263)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G21150 AT1G21150 AT1G21150
fragaria_vesca FvH4_4g17900 FvH4_6g26110 FvH4_6g33880 FvH4_6g33900 FvH4_6g34011 FvH4_6g34011 FvH4_6g34011 FvH4_6g34011 FvH4_6g34030 FvH4_6g34040 FvH4_6g34070 FvH4_6g34070 FvH4_7g12830
malus_domestica MD09G1189800.v1.1 MD09G1189900.v1.1 MD09G1190000.v1.1 MD14G1088800.v1.1 MD14G1088900.v1.1 MD17G1172900.v1.1
pyrus_communis pycom07g03460 pycom09g10650 pycom14g07860
rosa_chinensis RchiOBHm_Chr1g0351891 RchiOBHm_Chr1g0351901 RchiOBHm_Chr2g0143771 RchiOBHm_Chr2g0143861 RchiOBHm_Chr2g0143881 RchiOBHm_Chr2g0143941 RchiOBHm_Chr2g0143951 RchiOBHm_Chr2g0144081 RchiOBHm_Chr2g0144091 RchiOBHm_Chr2g0144211 RchiOBHm_Chr2g0144231 RchiOBHm_Chr2g0144241 RchiOBHm_Chr2g0144291 RchiOBHm_Chr2g0144301 RchiOBHm_Chr2g0144311 RchiOBHm_Chr2g0144331 RchiOBHm_Chr2g0144341 RchiOBHm_Chr4g0422021 RchiOBHm_Chr4g0422031
rosa_laevigata RLG00000007639 RLG00000020063 RLG00000020071 RLG00000020072 RLG00000020074
rosa_multiflora Rmu_co8214640.1_g000001 Rmu_co8471033.1_g000001 Rmu_sc0000789.1_g000002 Rmu_sc0001321.1_g000001 Rmu_sc0004340.1_g000001 Rmu_sc0004897.1_g000001 Rmu_sc0007105.1_g000005 Rmu_sc0009498.1_g000001 Rmu_sc0009498.1_g000002 Rmu_sc0019136.1_g000001 Rmu_sc0020327.1_g000002 Rmu_sc0020327.1_g000003 Rmu_sc0022905.1_g000001 Rmu_sc0032602.1_g000003 Rmu_sc0032602.1_g000004
rosa_roxburghii Rroxscaffold_2G00101380 Rroxscaffold_2G00101390 Rroxscaffold_2G00101400 Rroxscaffold_2G00101410 Rroxscaffold_2G00101480 Rroxscaffold_2G00101490 Rroxscaffold_4G00303470 Rroxscaffold_5G00364130 Rroxscaffold_5G00364150
rosa_rugosa Rorug01G0222600 Rorug02G0384700 Rorug02G0384800 Rorug02G0385800 Rorug02G0385900 Rorug02G0386000 Rorug02G0386000 Rorug02G0386100 Rorug04G0176700 Rorug04G0176800.1
rosa_samantha Rh1AG236500 Rh1AG236600 Rh1BG206900 Rh1CG221000 Rh1CG221100 Rh2BG444800 Rh2BG444900 Rh2BG446600 Rh2BG446700 Rh2BG447600 Rh2BG448100 Rh2BG448400 Rh2BG448500 Rh2BG448700 Rh2BG448800 Rh2CG423500 Rh2CG423600 Rh2CG424800 Rh2CG424900 Rh2CG425100 Rh2CG425200 Rh2DG455200 Rh2DG455300 Rh2DG456900 Rh2DG457000 Rh2DG457100 Rh2DG457600 Rh2DG457900 Rh2DG458000 Rh2DG458300 Rh2DG458400 Rh4AG236100 Rh4AG236200 Rh4BG239200 Rh4CG250900 Rh4CG251100
rosa_wichuraiana Rw0G000400 Rw0G015990 Rw0G017200 Rw1G020580 Rw2G033310 Rw2G035630 Rw2G035640 Rw2G035790 Rw2G035800 Rw2G035840 Rw2G036160 Rw4G019830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 272
AccB1I GGYRCC 2 cut(s) 272, 613
AciI CCGC 1 cut(s) 523
AcsI RAATTY 1 cut(s) 773
AcuI CTGAAG 3 cut(s) 502, 819, 832
AcyI GRCGYC 1 cut(s) 68
AfaI GTAC 3 cut(s) 274, 728, 1101
AfiI CCNNNNNNNGG 1 cut(s) 1000
AgsI TTSAA 2 cut(s) 215, 322
AjuI GAANNNNNNNTTGG 2 cut(s) 1049, 1081
AluBI AGCT 4 cut(s) 247, 293, 432, 496
AluI AGCT 4 cut(s) 247, 293, 432, 496
Alw26I GTCTC 2 cut(s) 286, 449
AlwNI CAGNNNCTG 1 cut(s) 383
Ama87I CYCGRG 2 cut(s) 219, 350
ApoI RAATTY 1 cut(s) 773
Asp700I GAANNNNTTC 1 cut(s) 1061
Asp718I GGTACC 1 cut(s) 272
AspA2I CCTAGG 1 cut(s) 968
AsuHPI GGTGA 3 cut(s) 122, 457, 524
AsuII TTCGAA 1 cut(s) 61
AvaI CYCGRG 2 cut(s) 219, 350
AvrII CCTAGG 1 cut(s) 968
BaeGI GKGCMC 2 cut(s) 618, 634
BaeI ACNNNNGTAYC 2 cut(s) 264, 297
BanI GGYRCC 2 cut(s) 272, 613
BbsI GAAGAC 1 cut(s) 338
BccI CCATC 1 cut(s) 763
BcgI CGANNNNNNTGC 2 cut(s) 673, 707
BciVI GTATCC 2 cut(s) 491, 739
BclI TGATCA 1 cut(s) 1080
BcoDI GTCTC 2 cut(s) 286, 449
BfaI CTAG 4 cut(s) 294, 393, 969, 1189
BfmI CTRYAG 1 cut(s) 1043
BfuI GTATCC 2 cut(s) 491, 739
BlnI CCTAGG 1 cut(s) 968
BmeT110I CYCGRG 2 cut(s) 219, 350
BmiI GGNNCC 3 cut(s) 274, 398, 615
BmsI GCATC 2 cut(s) 1012, 1034
BpiI GAAGAC 1 cut(s) 338
BpmI CTGGAG 1 cut(s) 977
Bpu10I CCTNAGC 1 cut(s) 1153
Bpu14I TTCGAA 1 cut(s) 61
BsaAI YACGTR 2 cut(s) 479, 730
BsaHI GRCGYC 1 cut(s) 68
BsaJI CCNNGG 1 cut(s) 968
BsaWI WCCGGW 1 cut(s) 565
Bsc4I CCNNNNNNNGG 1 cut(s) 1000
Bse1I ACTGG 2 cut(s) 867, 994
BseDI CCNNGG 1 cut(s) 968
BseGI GGATG 1 cut(s) 929
BseLI CCNNNNNNNGG 1 cut(s) 1000
BseMII CTCAG 5 cut(s) 249, 318, 460, 639, 924
BseNI ACTGG 2 cut(s) 867, 994
BseSI GKGCMC 2 cut(s) 618, 634
BshNI GGYRCC 2 cut(s) 272, 613
BsiHKCI CYCGRG 2 cut(s) 219, 350
BsiSI CCGG 1 cut(s) 566
BslFI GGGAC 1 cut(s) 816
BslI CCNNNNNNNGG 1 cut(s) 1000
BsmAI GTCTC 2 cut(s) 286, 449
BsmFI GGGAC 1 cut(s) 816
BsoBI CYCGRG 2 cut(s) 219, 350
Bsp119I TTCGAA 1 cut(s) 61
Bsp1286I GDGCHC 2 cut(s) 618, 634
Bsp143I GATC 2 cut(s) 460, 1080
BspACI CCGC 1 cut(s) 523
BspCNI CTCAG 5 cut(s) 248, 319, 459, 640, 923
BspHI TCATGA 1 cut(s) 714
BspLI GGNNCC 3 cut(s) 274, 398, 615
BspMAI CTGCAG 1 cut(s) 1047
BspT104I TTCGAA 1 cut(s) 61
BspT107I GGYRCC 2 cut(s) 272, 613
BsrI ACTGG 2 cut(s) 867, 994
BssECI CCNNGG 1 cut(s) 968
BssMI GATC 2 cut(s) 460, 1080
BssNI GRCGYC 1 cut(s) 68
BssT1I CCWWGG 1 cut(s) 968
Bst4CI ACNGT 4 cut(s) 136, 210, 385, 726
BstACI GRCGYC 1 cut(s) 68
BstBAI YACGTR 2 cut(s) 479, 730
BstBI TTCGAA 1 cut(s) 61
BstC8I GCNNGC 1 cut(s) 905
BstDEI CTNAG 7 cut(s) 235, 327, 433, 446, 648, 910, 1153
BstF5I GGATG 1 cut(s) 929
BstKTI GATC 2 cut(s) 463, 1083
BstMAI GTCTC 2 cut(s) 286, 449
BstMBI GATC 2 cut(s) 460, 1080
BstMWI GCNNNNNNNGC 1 cut(s) 378
BstSFI CTRYAG 1 cut(s) 1043
BstSLI GKGCMC 2 cut(s) 618, 634
BstSNI TACGTA 1 cut(s) 479
BstV2I GAAGAC 1 cut(s) 338
BstXI CCANNNNNNTGG 1 cut(s) 874
BsuI GTATCC 2 cut(s) 491, 739
BtsCI GGATG 1 cut(s) 929
BtsIMutI CAGTG 4 cut(s) 381, 722, 744, 856
Cac8I GCNNGC 1 cut(s) 905
CaiI CAGNNNCTG 1 cut(s) 383
CciI TCATGA 1 cut(s) 714
CseI GACGC 1 cut(s) 76
Csp6I GTAC 3 cut(s) 273, 727, 1100
CviAII CATG 4 cut(s) 278, 581, 685, 715
CviJI RGCY 9 cut(s) 247, 293, 397, 432, 496, 907, 920, 1005, 1152
CviKI_1 RGCY 9 cut(s) 247, 293, 397, 432, 496, 907, 920, 1005, 1152
CviQI GTAC 3 cut(s) 273, 727, 1100
DdeI CTNAG 7 cut(s) 235, 327, 433, 446, 648, 910, 1153
DpnI GATC 2 cut(s) 462, 1082
DpnII GATC 2 cut(s) 460, 1080
EciI GGCGGA 1 cut(s) 538
Eco105I TACGTA 1 cut(s) 479
Eco130I CCWWGG 1 cut(s) 968
Eco32I GATATC 1 cut(s) 735
Eco57I CTGAAG 3 cut(s) 502, 819, 832
Eco88I CYCGRG 2 cut(s) 219, 350
EcoRV GATATC 1 cut(s) 735
EcoT14I CCWWGG 1 cut(s) 968
EcoT22I ATGCAT 1 cut(s) 1027
ErhI CCWWGG 1 cut(s) 968
FaeI CATG 4 cut(s) 281, 584, 688, 718
FalI AAGNNNNNCTT 4 cut(s) 1049, 1081, 1136, 1168
FaqI GGGAC 1 cut(s) 816
FatI CATG 4 cut(s) 277, 580, 684, 714
FbaI TGATCA 1 cut(s) 1080
FokI GGATG 1 cut(s) 936
FspBI CTAG 4 cut(s) 294, 393, 969, 1189
GsuI CTGGAG 1 cut(s) 977
HapII CCGG 1 cut(s) 566
HgaI GACGC 1 cut(s) 76
Hin1I GRCGYC 1 cut(s) 68
Hin1II CATG 4 cut(s) 281, 584, 688, 718
HindIII AAGCTT 2 cut(s) 245, 430
HinfI GANTC 9 cut(s) 215, 233, 264, 417, 540, 644, 690, 829, 960
HpaII CCGG 1 cut(s) 566
HphI GGTGA 3 cut(s) 122, 457, 524
Hpy166II GTNNAC 1 cut(s) 151
Hpy188I TCNGA 6 cut(s) 252, 286, 449, 649, 913, 986
Hpy188III TCNNGA 4 cut(s) 219, 715, 929, 1091
Hpy8I GTNNAC 1 cut(s) 151
Hpy99I CGWCG 1 cut(s) 491
HpyAV CCTTC 4 cut(s) 646, 708, 819, 856
HpyCH4III ACNGT 4 cut(s) 136, 210, 385, 726
HpyCH4IV ACGT 2 cut(s) 478, 729
HpyCH4V TGCA 5 cut(s) 31, 546, 1025, 1045, 1142
HpyF10VI GCNNNNNNNGC 1 cut(s) 378
HpyF3I CTNAG 7 cut(s) 235, 327, 433, 446, 648, 910, 1153
HpySE526I ACGT 2 cut(s) 478, 729
Hsp92I GRCGYC 1 cut(s) 68
Hsp92II CATG 4 cut(s) 281, 584, 688, 718
KpnI GGTACC 1 cut(s) 276
Ksp22I TGATCA 1 cut(s) 1080
Kzo9I GATC 2 cut(s) 460, 1080
LmnI GCTCC 2 cut(s) 402, 501
LweI GCATC 2 cut(s) 1012, 1034
MaeI CTAG 4 cut(s) 294, 393, 969, 1189
MaeII ACGT 2 cut(s) 478, 729
MaeIII GTNAC 3 cut(s) 404, 512, 739
MalI GATC 2 cut(s) 462, 1082
MboI GATC 2 cut(s) 460, 1080
MboII GAAGA 6 cut(s) 343, 659, 778, 812, 868, 1031
MhlI GDGCHC 2 cut(s) 618, 634
MluCI AATT 4 cut(s) 32, 773, 1032, 1106
MlyI GAGTC 5 cut(s) 227, 258, 534, 638, 838
MmeI TCCRAC 1 cut(s) 773
MnlI CCTC 6 cut(s) 81, 607, 615, 919, 994, 1163
Mph1103I ATGCAT 1 cut(s) 1027
MroXI GAANNNNTTC 1 cut(s) 1061
MseI TTAA 4 cut(s) 243, 428, 657, 1007
MslI CAYNNNNRTG 3 cut(s) 683, 713, 754
MspI CCGG 1 cut(s) 566
MwoI GCNNNNNNNGC 1 cut(s) 378
NdeII GATC 2 cut(s) 460, 1080
NlaIII CATG 4 cut(s) 281, 584, 688, 718
NlaIV GGNNCC 3 cut(s) 274, 398, 615
NmuCI GTSAC 2 cut(s) 512, 739
NsiI ATGCAT 1 cut(s) 1027
NspV TTCGAA 1 cut(s) 61
PaeR7I CTCGAG 1 cut(s) 350
PagI TCATGA 1 cut(s) 714
PcsI WCGNNNNNNNCGW 1 cut(s) 749
PdmI GAANNNNTTC 1 cut(s) 1061
PfeI GAWTC 4 cut(s) 215, 417, 690, 960
PleI GAGTC 5 cut(s) 227, 258, 534, 638, 837
PpsI GAGTC 5 cut(s) 227, 258, 534, 638, 837
Ppu21I YACGTR 2 cut(s) 479, 730
PspN4I GGNNCC 3 cut(s) 274, 398, 615
PspXI VCTCGAGB 1 cut(s) 350
PstI CTGCAG 1 cut(s) 1047
PstNI CAGNNNCTG 1 cut(s) 383
RsaI GTAC 3 cut(s) 274, 728, 1101
RsaNI GTAC 3 cut(s) 273, 727, 1100
RseI CAYNNNNRTG 3 cut(s) 683, 713, 754
SaqAI TTAA 4 cut(s) 243, 428, 657, 1007
Sau3AI GATC 2 cut(s) 460, 1080
SchI GAGTC 5 cut(s) 227, 258, 534, 638, 838
SduI GDGCHC 2 cut(s) 618, 634
SfaNI GCATC 2 cut(s) 1012, 1034
SfcI CTRYAG 1 cut(s) 1043
Sfr274I CTCGAG 1 cut(s) 350
SfuI TTCGAA 1 cut(s) 61
SlaI CTCGAG 1 cut(s) 350
SmiMI CAYNNNNRTG 3 cut(s) 683, 713, 754
SmlI CTYRAG 1 cut(s) 350
SmoI CTYRAG 1 cut(s) 350
SnaBI TACGTA 1 cut(s) 479
Sse9I AATT 4 cut(s) 32, 773, 1032, 1106
SsiI CCGC 1 cut(s) 523
SspI AATATT 1 cut(s) 562
SspMI CTAG 4 cut(s) 294, 393, 969, 1189
StyI CCWWGG 1 cut(s) 968
TaaI ACNGT 4 cut(s) 136, 210, 385, 726
TaiI ACGT 2 cut(s) 481, 732
TaqI TCGA 5 cut(s) 61, 351, 556, 693, 752
TasI AATT 4 cut(s) 32, 773, 1032, 1106
TfiI GAWTC 4 cut(s) 215, 417, 690, 960
Tru1I TTAA 4 cut(s) 243, 428, 657, 1007
Tru9I TTAA 4 cut(s) 243, 428, 657, 1007
TscAI CASTG 4 cut(s) 388, 729, 744, 856
TseFI GTSAC 2 cut(s) 512, 739
Tsp45I GTSAC 2 cut(s) 512, 739
TspDTI ATGAA 6 cut(s) 129, 129, 690, 703, 731, 1179
TspGWI ACGGA 2 cut(s) 488, 758
TspRI CASTG 4 cut(s) 388, 729, 744, 856
XapI RAATTY 1 cut(s) 773
XhoI CTCGAG 1 cut(s) 350
XmaJI CCTAGG 1 cut(s) 968
XmnI GAANNNNTTC 1 cut(s) 1061
XspI CTAG 4 cut(s) 294, 393, 969, 1189
Zsp2I ATGCAT 1 cut(s) 1027
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.