Rh2DG457900
ERF Family

mTERF

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000263
Physical Location & Seq
Forward (+)
66229334 .. 66240089
10756 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG457900.1

Sequence Viewer

Length: 1053 bp
ATGGATTCAGAGTCTCGAGAGAGAAAAGCAAGTGACTTTTCTGGAGATGATGTACCAGCTCCTCCCCCACCAATACCAGAACCAAGAGATCAGCCGCCTCACTGTCGCCTACTTTGTCGTCTCCGGCCTCGACCTCCTCTGCGCTCTCCACCGCTTACGAAACGCCCACACCTGTTTTTATTCAATGCTGAGAAGACCCTTTTGCCCAAACTCGAGTTTTTTTGTTCTATTGGCATTTCAGGCACTGTCCTTGCTAGGCTCCTTTGTAACAACCCAAGAATCTTGGCATTAAGCTTAGAGAGAAGTCTCAGACCTTGTTATGATCTCACCAAAACTCTACGTATCCCCGACGAAAAGCTCCGTTATTTTTTTGGTGACTTCAGACGGAATAGTTTGGAAAGACTCTGCATTGTTGCTCGAAATATTCCGGTGCTGACAGCACATGATGTGCCACAATCCTCATTTCCTCTGTGGGTGCCCTTTTATTTTAGGGCACTATCCTTTGACTCTGAGAAGGTTAAGACGAATCTTCACAAGGTCATTAGCATGGGATTCGACCCTTCATCTGCCACATTCATGAAAGCACTGTATGTGATATCAGTGACGGATACATCGAAATGGGAACAGAAGATGGAATTTTATAGCAAGTGGGGTTGGACTGAAGATGATGTGTTGTTGGCATTTAGAAGGAGTCCCTTGTTTATGTCCTTCAGTGAGAAGATTATTTCCAGTAAAATGGATTTTTATGTGAATACATTGGGTTGCCAGCCCTCAGATGTGGCTGGATGTCCAGATGTTCTAACTTATAGTTTGGAGAAGCGAATCATACCTAGGTGTTCAGTTATCAGACTTCTCCAGTTAGAGGGCTTAATCGCAAAGGAAGATGCATCTATAATTACCATTCTGCAGAAAAGTGAGAAGTGGTTCTTGGAAAGGTTTGTGATCAAATATCAAGAGCAAGTACCAGAATTGCTGACATCTTACAAGGAAAAAATCAGTCTTGCAAAGTTTGGCTTAGGATTAGATGAAAGAGGTGGAGTGAAACAAGTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
mTERF

Protein Analysis

350

Amino Acids

40.24

Weight (kDa)

9.12

Isoelectric Point (pI)

57.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
mTERF PF02536 52 - 117 1.3e-06 mTERF
mTERF PF02536 166 - 309 1.3e-17 mTERF
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000263)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G21150 AT1G21150 AT1G21150
fragaria_vesca FvH4_4g17900 FvH4_6g26110 FvH4_6g33880 FvH4_6g33900 FvH4_6g34011 FvH4_6g34011 FvH4_6g34011 FvH4_6g34011 FvH4_6g34030 FvH4_6g34040 FvH4_6g34070 FvH4_6g34070 FvH4_7g12830
malus_domestica MD09G1189800.v1.1 MD09G1189900.v1.1 MD09G1190000.v1.1 MD14G1088800.v1.1 MD14G1088900.v1.1 MD17G1172900.v1.1
pyrus_communis pycom07g03460 pycom09g10650 pycom14g07860
rosa_chinensis RchiOBHm_Chr1g0351891 RchiOBHm_Chr1g0351901 RchiOBHm_Chr2g0143771 RchiOBHm_Chr2g0143861 RchiOBHm_Chr2g0143881 RchiOBHm_Chr2g0143941 RchiOBHm_Chr2g0143951 RchiOBHm_Chr2g0144081 RchiOBHm_Chr2g0144091 RchiOBHm_Chr2g0144211 RchiOBHm_Chr2g0144231 RchiOBHm_Chr2g0144241 RchiOBHm_Chr2g0144291 RchiOBHm_Chr2g0144301 RchiOBHm_Chr2g0144311 RchiOBHm_Chr2g0144331 RchiOBHm_Chr2g0144341 RchiOBHm_Chr4g0422021 RchiOBHm_Chr4g0422031
rosa_laevigata RLG00000007639 RLG00000020063 RLG00000020071 RLG00000020072 RLG00000020074
rosa_multiflora Rmu_co8214640.1_g000001 Rmu_co8471033.1_g000001 Rmu_sc0000789.1_g000002 Rmu_sc0001321.1_g000001 Rmu_sc0004340.1_g000001 Rmu_sc0004897.1_g000001 Rmu_sc0007105.1_g000005 Rmu_sc0009498.1_g000001 Rmu_sc0009498.1_g000002 Rmu_sc0019136.1_g000001 Rmu_sc0020327.1_g000002 Rmu_sc0020327.1_g000003 Rmu_sc0022905.1_g000001 Rmu_sc0032602.1_g000003 Rmu_sc0032602.1_g000004
rosa_roxburghii Rroxscaffold_2G00101380 Rroxscaffold_2G00101390 Rroxscaffold_2G00101400 Rroxscaffold_2G00101410 Rroxscaffold_2G00101480 Rroxscaffold_2G00101490 Rroxscaffold_4G00303470 Rroxscaffold_5G00364130 Rroxscaffold_5G00364150
rosa_rugosa Rorug01G0222600 Rorug02G0384700 Rorug02G0384800 Rorug02G0385800 Rorug02G0385900 Rorug02G0386000 Rorug02G0386000 Rorug02G0386100 Rorug04G0176700 Rorug04G0176800.1
rosa_samantha Rh1AG236500 Rh1AG236600 Rh1BG206900 Rh1CG221000 Rh1CG221100 Rh2BG444800 Rh2BG444900 Rh2BG446600 Rh2BG446700 Rh2BG447600 Rh2BG448100 Rh2BG448400 Rh2BG448500 Rh2BG448700 Rh2BG448800 Rh2CG423500 Rh2CG423600 Rh2CG424800 Rh2CG424900 Rh2CG425100 Rh2CG425200 Rh2DG455200 Rh2DG455300 Rh2DG456900 Rh2DG457000 Rh2DG457100 Rh2DG457600 Rh2DG457900 Rh2DG458000 Rh2DG458300 Rh2DG458400 Rh4AG236100 Rh4AG236200 Rh4BG239200 Rh4CG250900 Rh4CG251100
rosa_wichuraiana Rw0G000400 Rw0G015990 Rw0G017200 Rw1G020580 Rw2G033310 Rw2G035630 Rw2G035640 Rw2G035790 Rw2G035800 Rw2G035840 Rw2G036160 Rw4G019830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 475
AciI CCGC 2 cut(s) 95, 152
AcsI RAATTY 1 cut(s) 635
AcuI CTGAAG 3 cut(s) 364, 681, 694
AfaI GTAC 2 cut(s) 54, 963
AfiI CCNNNNNNNGG 1 cut(s) 862
AgsI TTSAA 1 cut(s) 184
AjuI GAANNNNNNNTTGG 2 cut(s) 911, 943
AluBI AGCT 3 cut(s) 59, 294, 358
AluI AGCT 3 cut(s) 59, 294, 358
Alw26I GTCTC 3 cut(s) 18, 125, 311
AlwNI CAGNNNCTG 1 cut(s) 245
Ama87I CYCGRG 2 cut(s) 15, 212
AoxI GGCC 1 cut(s) 125
ApoI RAATTY 1 cut(s) 635
Asp700I GAANNNNTTC 1 cut(s) 923
AspA2I CCTAGG 1 cut(s) 830
AspLEI GCGC 1 cut(s) 144
AsuHPI GGTGA 2 cut(s) 319, 386
AvaI CYCGRG 2 cut(s) 15, 212
AvrII CCTAGG 1 cut(s) 830
BaeGI GKGCMC 2 cut(s) 480, 496
BanI GGYRCC 1 cut(s) 475
BbsI GAAGAC 1 cut(s) 200
BccI CCATC 1 cut(s) 625
BcgI CGANNNNNNTGC 2 cut(s) 535, 569
BciVI GTATCC 2 cut(s) 353, 601
BclI TGATCA 1 cut(s) 942
BcoDI GTCTC 3 cut(s) 18, 125, 311
BfaI CTAG 3 cut(s) 255, 831, 1051
BfmI CTRYAG 1 cut(s) 905
BfuI GTATCC 2 cut(s) 353, 601
BisI GCNGC 1 cut(s) 95
BlnI CCTAGG 1 cut(s) 830
BlsI GCNGC 1 cut(s) 96
BmeT110I CYCGRG 2 cut(s) 15, 212
BmiI GGNNCC 2 cut(s) 260, 477
BmsI GCATC 2 cut(s) 874, 896
BpiI GAAGAC 1 cut(s) 200
BpmI CTGGAG 2 cut(s) 63, 839
Bpu10I CCTNAGC 1 cut(s) 1015
BsaAI YACGTR 1 cut(s) 341
BsaJI CCNNGG 1 cut(s) 830
BsaWI WCCGGW 1 cut(s) 427
BsaXI ACNNNNNCTCC 2 cut(s) 36, 66
Bsc4I CCNNNNNNNGG 1 cut(s) 862
Bse1I ACTGG 2 cut(s) 729, 856
BseDI CCNNGG 1 cut(s) 830
BseGI GGATG 1 cut(s) 791
BseLI CCNNNNNNNGG 1 cut(s) 862
BseMII CTCAG 4 cut(s) 180, 322, 501, 786
BseNI ACTGG 2 cut(s) 729, 856
BseRI GAGGAG 2 cut(s) 51, 126
BseSI GKGCMC 2 cut(s) 480, 496
BshFI GGCC 1 cut(s) 127
BshNI GGYRCC 1 cut(s) 475
BsiHKCI CYCGRG 2 cut(s) 15, 212
BsiSI CCGG 2 cut(s) 124, 428
BslFI GGGAC 1 cut(s) 678
BslI CCNNNNNNNGG 1 cut(s) 862
BsmAI GTCTC 3 cut(s) 18, 125, 311
BsmBI CGTCTC 1 cut(s) 125
BsmFI GGGAC 1 cut(s) 678
BsnI GGCC 1 cut(s) 127
BsoBI CYCGRG 2 cut(s) 15, 212
Bsp1286I GDGCHC 2 cut(s) 480, 496
Bsp143I GATC 3 cut(s) 88, 322, 942
BspACI CCGC 2 cut(s) 95, 152
BspANI GGCC 1 cut(s) 127
BspCNI CTCAG 4 cut(s) 181, 321, 502, 785
BspHI TCATGA 1 cut(s) 576
BspLI GGNNCC 2 cut(s) 260, 477
BspMAI CTGCAG 1 cut(s) 909
BspT107I GGYRCC 1 cut(s) 475
BsrI ACTGG 2 cut(s) 729, 856
BssECI CCNNGG 1 cut(s) 830
BssMI GATC 3 cut(s) 88, 322, 942
BssT1I CCWWGG 1 cut(s) 830
Bst4CI ACNGT 3 cut(s) 104, 247, 588
BstBAI YACGTR 1 cut(s) 341
BstC8I GCNNGC 1 cut(s) 767
BstDEI CTNAG 6 cut(s) 189, 295, 308, 510, 772, 1015
BstF5I GGATG 1 cut(s) 791
BstHHI GCGC 1 cut(s) 144
BstKTI GATC 3 cut(s) 91, 325, 945
BstMAI GTCTC 3 cut(s) 18, 125, 311
BstMBI GATC 3 cut(s) 88, 322, 942
BstMWI GCNNNNNNNGC 1 cut(s) 240
BstSFI CTRYAG 1 cut(s) 905
BstSLI GKGCMC 2 cut(s) 480, 496
BstSNI TACGTA 1 cut(s) 341
BstV2I GAAGAC 1 cut(s) 200
BstXI CCANNNNNNTGG 1 cut(s) 736
BsuI GTATCC 2 cut(s) 353, 601
BsuRI GGCC 1 cut(s) 127
BtsCI GGATG 1 cut(s) 791
BtsIMutI CAGTG 5 cut(s) 100, 243, 584, 606, 718
Cac8I GCNNGC 1 cut(s) 767
CaiI CAGNNNCTG 1 cut(s) 245
CciI TCATGA 1 cut(s) 576
CfoI GCGC 1 cut(s) 144
Csp6I GTAC 2 cut(s) 53, 962
CviAII CATG 3 cut(s) 443, 547, 577
CviQI GTAC 2 cut(s) 53, 962
DdeI CTNAG 6 cut(s) 189, 295, 308, 510, 772, 1015
DpnI GATC 3 cut(s) 90, 324, 944
DpnII GATC 3 cut(s) 88, 322, 942
Eco105I TACGTA 1 cut(s) 341
Eco130I CCWWGG 1 cut(s) 830
Eco32I GATATC 1 cut(s) 597
Eco57I CTGAAG 3 cut(s) 364, 681, 694
Eco88I CYCGRG 2 cut(s) 15, 212
EcoRV GATATC 1 cut(s) 597
EcoT14I CCWWGG 1 cut(s) 830
EcoT22I ATGCAT 1 cut(s) 889
ErhI CCWWGG 1 cut(s) 830
Esp3I CGTCTC 1 cut(s) 125
FaeI CATG 3 cut(s) 446, 550, 580
FalI AAGNNNNNCTT 4 cut(s) 911, 943, 998, 1030
FaqI GGGAC 1 cut(s) 678
FatI CATG 3 cut(s) 442, 546, 576
FbaI TGATCA 1 cut(s) 942
Fnu4HI GCNGC 1 cut(s) 95
FokI GGATG 1 cut(s) 798
Fsp4HI GCNGC 1 cut(s) 95
FspBI CTAG 3 cut(s) 255, 831, 1051
GlaI GCGC 1 cut(s) 143
GluI GCNGC 1 cut(s) 95
GsuI CTGGAG 2 cut(s) 63, 839
HaeIII GGCC 1 cut(s) 127
HapII CCGG 2 cut(s) 124, 428
HhaI GCGC 1 cut(s) 144
Hin1II CATG 3 cut(s) 446, 550, 580
Hin6I GCGC 1 cut(s) 142
HinP1I GCGC 1 cut(s) 142
HindIII AAGCTT 1 cut(s) 292
HinfI GANTC 9 cut(s) 5, 11, 279, 402, 506, 526, 552, 691, 822
HpaII CCGG 2 cut(s) 124, 428
HphI GGTGA 2 cut(s) 319, 386
Hpy188I TCNGA 6 cut(s) 10, 311, 383, 511, 775, 848
Hpy188III TCNNGA 6 cut(s) 15, 17, 42, 577, 791, 953
Hpy99I CGWCG 1 cut(s) 353
HpyAV CCTTC 4 cut(s) 508, 570, 681, 718
HpyCH4III ACNGT 3 cut(s) 104, 247, 588
HpyCH4IV ACGT 1 cut(s) 340
HpyCH4V TGCA 4 cut(s) 408, 887, 907, 1004
HpyF10VI GCNNNNNNNGC 1 cut(s) 240
HpyF3I CTNAG 6 cut(s) 189, 295, 308, 510, 772, 1015
HpySE526I ACGT 1 cut(s) 340
Hsp92II CATG 3 cut(s) 446, 550, 580
HspAI GCGC 1 cut(s) 142
Ksp22I TGATCA 1 cut(s) 942
Kzo9I GATC 3 cut(s) 88, 322, 942
LmnI GCTCC 3 cut(s) 64, 264, 363
LweI GCATC 2 cut(s) 874, 896
MaeI CTAG 3 cut(s) 255, 831, 1051
MaeII ACGT 1 cut(s) 340
MaeIII GTNAC 4 cut(s) 32, 266, 374, 601
MalI GATC 3 cut(s) 90, 324, 944
MboI GATC 3 cut(s) 88, 322, 942
MboII GAAGA 6 cut(s) 205, 521, 640, 674, 730, 893
MhlI GDGCHC 2 cut(s) 480, 496
MluCI AATT 3 cut(s) 635, 894, 968
MlyI GAGTC 4 cut(s) 20, 396, 500, 700
MmeI TCCRAC 1 cut(s) 635
Mph1103I ATGCAT 1 cut(s) 889
MroXI GAANNNNTTC 1 cut(s) 923
MseI TTAA 3 cut(s) 290, 519, 869
MslI CAYNNNNRTG 3 cut(s) 545, 575, 616
MspI CCGG 2 cut(s) 124, 428
MwoI GCNNNNNNNGC 1 cut(s) 240
NdeII GATC 3 cut(s) 88, 322, 942
NlaIII CATG 3 cut(s) 446, 550, 580
NlaIV GGNNCC 2 cut(s) 260, 477
NmuCI GTSAC 3 cut(s) 32, 374, 601
NsiI ATGCAT 1 cut(s) 889
PaeR7I CTCGAG 2 cut(s) 15, 212
PagI TCATGA 1 cut(s) 576
PcsI WCGNNNNNNNCGW 1 cut(s) 611
PdmI GAANNNNTTC 1 cut(s) 923
PfeI GAWTC 5 cut(s) 5, 279, 526, 552, 822
PkrI GCNGC 1 cut(s) 96
PleI GAGTC 4 cut(s) 19, 396, 500, 699
PpsI GAGTC 4 cut(s) 19, 396, 500, 699
Ppu21I YACGTR 1 cut(s) 341
PspN4I GGNNCC 2 cut(s) 260, 477
PspXI VCTCGAGB 1 cut(s) 212
PstI CTGCAG 1 cut(s) 909
PstNI CAGNNNCTG 1 cut(s) 245
RsaI GTAC 2 cut(s) 54, 963
RsaNI GTAC 2 cut(s) 53, 962
RseI CAYNNNNRTG 3 cut(s) 545, 575, 616
SaqAI TTAA 3 cut(s) 290, 519, 869
SatI GCNGC 1 cut(s) 95
Sau3AI GATC 3 cut(s) 88, 322, 942
SchI GAGTC 4 cut(s) 20, 396, 500, 700
SduI GDGCHC 2 cut(s) 480, 496
SfaNI GCATC 2 cut(s) 874, 896
SfcI CTRYAG 1 cut(s) 905
Sfr274I CTCGAG 2 cut(s) 15, 212
SlaI CTCGAG 2 cut(s) 15, 212
SmiMI CAYNNNNRTG 3 cut(s) 545, 575, 616
SmlI CTYRAG 2 cut(s) 15, 212
SmoI CTYRAG 2 cut(s) 15, 212
SnaBI TACGTA 1 cut(s) 341
Sse9I AATT 3 cut(s) 635, 894, 968
SsiI CCGC 2 cut(s) 95, 152
SspI AATATT 1 cut(s) 424
SspMI CTAG 3 cut(s) 255, 831, 1051
StyI CCWWGG 1 cut(s) 830
TaaI ACNGT 3 cut(s) 104, 247, 588
TaiI ACGT 1 cut(s) 343
TaqI TCGA 6 cut(s) 16, 130, 213, 418, 555, 614
TasI AATT 3 cut(s) 635, 894, 968
TauI GCSGC 1 cut(s) 97
TfiI GAWTC 5 cut(s) 5, 279, 526, 552, 822
Tru1I TTAA 3 cut(s) 290, 519, 869
Tru9I TTAA 3 cut(s) 290, 519, 869
TscAI CASTG 5 cut(s) 107, 250, 591, 606, 718
TseFI GTSAC 3 cut(s) 32, 374, 601
Tsp45I GTSAC 3 cut(s) 32, 374, 601
TspDTI ATGAA 4 cut(s) 552, 565, 593, 1041
TspGWI ACGGA 3 cut(s) 350, 400, 620
TspRI CASTG 5 cut(s) 107, 250, 591, 606, 718
XapI RAATTY 1 cut(s) 635
XhoI CTCGAG 2 cut(s) 15, 212
XmaJI CCTAGG 1 cut(s) 830
XmnI GAANNNNTTC 1 cut(s) 923
XspI CTAG 3 cut(s) 255, 831, 1051
Zsp2I ATGCAT 1 cut(s) 889
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.