Rroxscaffold_5G00364150
ERF Family

mTERF

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000263
Physical Location & Seq
Forward (+)
45431104 .. 45432300
1197 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00364150.1

Sequence Viewer

Length: 1197 bp
ATGTTTGGTTTTTGCTGTAAAAGATTGCAATTACTGCTTCCAAGTGTTAGCACTTCTGTTGATTCAGTGACCCATTTACATTGCTTCCGCAAAGCATCTCACTTTAGCCGATCATATTCATCCAAATCATTATTAGGCCAAGAGAAAGATGGCTCTTTTACAGTTTCATACCTTGTAAACTCATGTGGGTTGTCACCAGAAGTTGCTCTCTCTTTATCCAAGAAGAGGGTACACTTCAAATCCAGAGAGAAACCAGACTCGGTTATTAAGCTTCTGAAACACTATGGATTCAATGACACATCCATATCCCAACTTGTGAAGAAACGCCCAGAAGTGCTAGTGGCCAATCCTGACAAGACCCTCTTGCCCAAACTTGAGTTTTTTAGTTCTATTGGCCTCTCAGGCATTGACATTGCTCAGGTTCTTTGCAGCAACCCAAGTGTTTTGAAACGAAATGTAGATAGAAGTCTCAGTCCTTGTTACGAAATCCTCAGAAGTCTACTTGGTTCCGACATAAAATTTGCAGGTTTCTTTAAGAACTCCTATCAGCTGTTGACGGTCAAATCAGTAAGCAACATTGCTCGGAATGTTTCAGTTCTCAGAGAACTTAAAGCACCAGAATCTTTAATCTCTTACTATGCAACATGTCAGCCATTGTTAATGTCCCTTGAAAACGAGAAGTTTCACCAAAATGTCAACAAGATCATGAGTTTGGGATTCCACCCTTCAACATCAACGACATTCATGAAAGCACTATTTGTGATCTCCACTACAGATTCATCAAAATGGGCACAAAAGATGGATTTCTATAAAAAGTGTGGTTGGACTGAAGATGACTTTTTGGTGGCATTTAGTAAGAATCCCCTCTTTATGAACATGACAGAGAAGAATATTTCTAGTAAAATGGATTTTATTGTCAACAAAATGGCTTTGGTTCAGCCTGCAGATTTGGCTCATTATCCGACTGTCCTAACTTACAGTTTGGAGAATCGGATAATACCTAGGGCTTCAGTTATTAGAGTTCTCCTGATGAAGGGCTTAATAACAAGGGGAGATTTTTCTTTCAACAGCTTGATGATATACAATAATAAGAAGTTCTTGGATAAGTTTGTGGTCCCATATCAACCACAAGTACCTGAATTGTTGAGCATCTTTGCAGGGAAAATGGGTCTTGTGGAACTGGACATTAGGGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
mTERF

Protein Analysis

398

Amino Acids

44.94

Weight (kDa)

9.52

Isoelectric Point (pI)

42.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
mTERF PF02536 89 - 298 4.8e-24 mTERF
mTERF PF02536 218 - 367 7.2e-17 mTERF
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000263)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G21150 AT1G21150 AT1G21150
fragaria_vesca FvH4_4g17900 FvH4_6g26110 FvH4_6g33880 FvH4_6g33900 FvH4_6g34011 FvH4_6g34011 FvH4_6g34011 FvH4_6g34011 FvH4_6g34030 FvH4_6g34040 FvH4_6g34070 FvH4_6g34070 FvH4_7g12830
malus_domestica MD09G1189800.v1.1 MD09G1189900.v1.1 MD09G1190000.v1.1 MD14G1088800.v1.1 MD14G1088900.v1.1 MD17G1172900.v1.1
pyrus_communis pycom07g03460 pycom09g10650 pycom14g07860
rosa_chinensis RchiOBHm_Chr1g0351891 RchiOBHm_Chr1g0351901 RchiOBHm_Chr2g0143771 RchiOBHm_Chr2g0143861 RchiOBHm_Chr2g0143881 RchiOBHm_Chr2g0143941 RchiOBHm_Chr2g0143951 RchiOBHm_Chr2g0144081 RchiOBHm_Chr2g0144091 RchiOBHm_Chr2g0144211 RchiOBHm_Chr2g0144231 RchiOBHm_Chr2g0144241 RchiOBHm_Chr2g0144291 RchiOBHm_Chr2g0144301 RchiOBHm_Chr2g0144311 RchiOBHm_Chr2g0144331 RchiOBHm_Chr2g0144341 RchiOBHm_Chr4g0422021 RchiOBHm_Chr4g0422031
rosa_laevigata RLG00000007639 RLG00000020063 RLG00000020071 RLG00000020072 RLG00000020074
rosa_multiflora Rmu_co8214640.1_g000001 Rmu_co8471033.1_g000001 Rmu_sc0000789.1_g000002 Rmu_sc0001321.1_g000001 Rmu_sc0004340.1_g000001 Rmu_sc0004897.1_g000001 Rmu_sc0007105.1_g000005 Rmu_sc0009498.1_g000001 Rmu_sc0009498.1_g000002 Rmu_sc0019136.1_g000001 Rmu_sc0020327.1_g000002 Rmu_sc0020327.1_g000003 Rmu_sc0022905.1_g000001 Rmu_sc0032602.1_g000003 Rmu_sc0032602.1_g000004
rosa_roxburghii Rroxscaffold_2G00101380 Rroxscaffold_2G00101390 Rroxscaffold_2G00101400 Rroxscaffold_2G00101410 Rroxscaffold_2G00101480 Rroxscaffold_2G00101490 Rroxscaffold_4G00303470 Rroxscaffold_5G00364130 Rroxscaffold_5G00364150
rosa_rugosa Rorug01G0222600 Rorug02G0384700 Rorug02G0384800 Rorug02G0385800 Rorug02G0385900 Rorug02G0386000 Rorug02G0386000 Rorug02G0386100 Rorug04G0176700 Rorug04G0176800.1
rosa_samantha Rh1AG236500 Rh1AG236600 Rh1BG206900 Rh1CG221000 Rh1CG221100 Rh2BG444800 Rh2BG444900 Rh2BG446600 Rh2BG446700 Rh2BG447600 Rh2BG448100 Rh2BG448400 Rh2BG448500 Rh2BG448700 Rh2BG448800 Rh2CG423500 Rh2CG423600 Rh2CG424800 Rh2CG424900 Rh2CG425100 Rh2CG425200 Rh2DG455200 Rh2DG455300 Rh2DG456900 Rh2DG457000 Rh2DG457100 Rh2DG457600 Rh2DG457900 Rh2DG458000 Rh2DG458300 Rh2DG458400 Rh4AG236100 Rh4AG236200 Rh4BG239200 Rh4CG250900 Rh4CG251100
rosa_wichuraiana Rw0G000400 Rw0G015990 Rw0G017200 Rw1G020580 Rw2G033310 Rw2G035630 Rw2G035640 Rw2G035790 Rw2G035800 Rw2G035840 Rw2G036160 Rw4G019830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 515
AccI GTMKAC 1 cut(s) 499
AciI CCGC 1 cut(s) 88
AcoI YGGCCR 1 cut(s) 342
AcsI RAATTY 1 cut(s) 518
AcuI CTGAAG 2 cut(s) 849, 993
AfaI GTAC 2 cut(s) 231, 1134
AfiI CCNNNNNNNGG 2 cut(s) 225, 1033
AflIII ACRYGT 1 cut(s) 644
AgsI TTSAA 6 cut(s) 238, 292, 448, 671, 729, 1066
AluBI AGCT 3 cut(s) 271, 550, 1071
AluI AGCT 3 cut(s) 271, 550, 1071
Alw26I GTCTC 1 cut(s) 473
AoxI GGCC 3 cut(s) 136, 342, 394
ApeKI GCWGC 1 cut(s) 429
ApoI RAATTY 1 cut(s) 518
ArsI GACNNNNNNTTYG 2 cut(s) 503, 535
AspA2I CCTAGG 1 cut(s) 1001
AspS9I GGNCC 1 cut(s) 1114
AsuHPI GGTGA 2 cut(s) 186, 677
AvaII GGWCC 1 cut(s) 1114
AvrII CCTAGG 1 cut(s) 1001
BaeGI GKGCMC 1 cut(s) 793
BalI TGGCCA 1 cut(s) 344
BbvI GCAGC 1 cut(s) 441
BccI CCATC 2 cut(s) 143, 793
BcoDI GTCTC 1 cut(s) 473
BfaI CTAG 3 cut(s) 338, 897, 1002
BfmI CTRYAG 2 cut(s) 771, 942
BfuAI ACCTGC 1 cut(s) 515
BglI GCCNNNNNGGC 1 cut(s) 402
BisI GCNGC 1 cut(s) 430
BlnI CCTAGG 1 cut(s) 1001
BlsI GCNGC 1 cut(s) 431
Bme18I GGWCC 1 cut(s) 1114
BmgT120I GGNCC 1 cut(s) 1114
BmiI GGNNCC 2 cut(s) 508, 1116
BmsI GCATC 2 cut(s) 104, 1158
Bpu10I CCTNAGC 1 cut(s) 417
BpuEI CTTGAG 1 cut(s) 395
BsaJI CCNNGG 1 cut(s) 1001
Bsc4I CCNNNNNNNGG 2 cut(s) 225, 1033
Bse1I ACTGG 1 cut(s) 1185
Bse3DI GCAATG 3 cut(s) 79, 411, 576
BseDI CCNNGG 1 cut(s) 1001
BseGI GGATG 2 cut(s) 119, 299
BseLI CCNNNNNNNGG 2 cut(s) 225, 1033
BseMI GCAATG 3 cut(s) 79, 411, 576
BseMII CTCAG 5 cut(s) 414, 431, 484, 505, 613
BseNI ACTGG 1 cut(s) 1185
BseSI GKGCMC 1 cut(s) 793
BseXI GCAGC 1 cut(s) 441
BshFI GGCC 3 cut(s) 138, 344, 396
BslFI GGGAC 2 cut(s) 649, 1100
BslI CCNNNNNNNGG 2 cut(s) 225, 1033
BsmAI GTCTC 1 cut(s) 473
BsmFI GGGAC 2 cut(s) 649, 1100
BsnI GGCC 3 cut(s) 138, 344, 396
Bsp1286I GDGCHC 1 cut(s) 793
Bsp143I GATC 3 cut(s) 110, 702, 762
BspACI CCGC 1 cut(s) 88
BspANI GGCC 3 cut(s) 138, 344, 396
BspCNI CTCAG 5 cut(s) 413, 430, 483, 504, 612
BspHI TCATGA 2 cut(s) 705, 744
BspLI GGNNCC 2 cut(s) 508, 1116
BspMAI CTGCAG 1 cut(s) 946
BspMI ACCTGC 1 cut(s) 515
BsrDI GCAATG 3 cut(s) 79, 411, 576
BsrI ACTGG 1 cut(s) 1185
BssECI CCNNGG 1 cut(s) 1001
BssMI GATC 3 cut(s) 110, 702, 762
BssT1I CCWWGG 1 cut(s) 1001
Bst4CI ACNGT 4 cut(s) 163, 559, 967, 980
Bst6I CTCTTC 1 cut(s) 218
BstAPI GCANNNNNTGC 1 cut(s) 34
BstC8I GCNNGC 1 cut(s) 942
BstDEI CTNAG 5 cut(s) 400, 417, 470, 491, 599
BstENI CCTNNNNNAGG 1 cut(s) 1031
BstF5I GGATG 2 cut(s) 119, 299
BstKTI GATC 3 cut(s) 113, 705, 765
BstMAI GTCTC 1 cut(s) 473
BstMBI GATC 3 cut(s) 110, 702, 762
BstMWI GCNNNNNNNGC 3 cut(s) 34, 402, 950
BstNSI RCATGY 1 cut(s) 648
BstSFI CTRYAG 2 cut(s) 771, 942
BstSLI GKGCMC 1 cut(s) 793
BstV1I GCAGC 1 cut(s) 441
BsuRI GGCC 3 cut(s) 138, 344, 396
BtsCI GGATG 2 cut(s) 119, 299
BtsIMutI CAGTG 1 cut(s) 72
BveI ACCTGC 1 cut(s) 515
Cac8I GCNNGC 1 cut(s) 942
CciI TCATGA 2 cut(s) 705, 744
Cfr13I GGNCC 1 cut(s) 1114
Csp6I GTAC 2 cut(s) 230, 1133
CviAII CATG 5 cut(s) 183, 645, 706, 745, 877
CviQI GTAC 2 cut(s) 230, 1133
DdeI CTNAG 5 cut(s) 400, 417, 470, 491, 599
DpnI GATC 3 cut(s) 112, 704, 764
DpnII GATC 3 cut(s) 110, 702, 762
EaeI YGGCCR 1 cut(s) 342
Eam1104I CTCTTC 1 cut(s) 218
EarI CTCTTC 1 cut(s) 218
Eco130I CCWWGG 1 cut(s) 1001
Eco47I GGWCC 1 cut(s) 1114
Eco57I CTGAAG 2 cut(s) 849, 993
EcoNI CCTNNNNNAGG 1 cut(s) 1031
EcoT14I CCWWGG 1 cut(s) 1001
ErhI CCWWGG 1 cut(s) 1001
FaeI CATG 5 cut(s) 186, 648, 709, 748, 880
FalI AAGNNNNNCTT 4 cut(s) 347, 379, 1082, 1114
FaqI GGGAC 2 cut(s) 649, 1100
FatI CATG 5 cut(s) 182, 644, 705, 744, 876
FblI GTMKAC 1 cut(s) 499
Fnu4HI GCNGC 1 cut(s) 430
FokI GGATG 2 cut(s) 106, 286
Fsp4HI GCNGC 1 cut(s) 430
FspBI CTAG 3 cut(s) 338, 897, 1002
GluI GCNGC 1 cut(s) 430
HaeIII GGCC 3 cut(s) 138, 344, 396
Hin1II CATG 5 cut(s) 186, 648, 709, 748, 880
HincII GTYRAC 3 cut(s) 555, 697, 919
HindII GTYRAC 3 cut(s) 555, 697, 919
HindIII AAGCTT 1 cut(s) 269
HinfI GANTC 8 cut(s) 62, 257, 288, 620, 717, 776, 859, 988
HphI GGTGA 2 cut(s) 186, 677
Hpy166II GTNNAC 6 cut(s) 178, 232, 500, 555, 697, 919
Hpy188I TCNGA 7 cut(s) 276, 494, 511, 585, 602, 963, 993
Hpy188III TCNNGA 5 cut(s) 243, 350, 706, 745, 1027
Hpy8I GTNNAC 6 cut(s) 178, 232, 500, 555, 697, 919
HpyAV CCTTC 2 cut(s) 735, 1027
HpyCH4III ACNGT 4 cut(s) 163, 559, 967, 980
HpyCH4V TGCA 6 cut(s) 28, 429, 524, 641, 944, 1157
HpyF10VI GCNNNNNNNGC 3 cut(s) 34, 402, 950
HpyF3I CTNAG 5 cut(s) 400, 417, 470, 491, 599
Hsp92II CATG 5 cut(s) 186, 648, 709, 748, 880
Kzo9I GATC 3 cut(s) 110, 702, 762
Lsp1109I GCAGC 1 cut(s) 441
LweI GCATC 2 cut(s) 104, 1158
MaeI CTAG 3 cut(s) 338, 897, 1002
MaeIII GTNAC 3 cut(s) 67, 192, 479
MalI GATC 3 cut(s) 112, 704, 764
MboI GATC 3 cut(s) 110, 702, 762
MboII GAAGA 4 cut(s) 235, 331, 842, 898
MhlI GDGCHC 1 cut(s) 793
MlsI TGGCCA 1 cut(s) 344
MluCI AATT 3 cut(s) 29, 518, 1139
MluNI TGGCCA 1 cut(s) 344
MlyI GAGTC 1 cut(s) 251
MmeI TCCRAC 3 cut(s) 534, 803, 986
MnlI CCTC 5 cut(s) 219, 371, 407, 500, 875
Mox20I TGGCCA 1 cut(s) 344
MscI TGGCCA 1 cut(s) 344
MseI TTAA 6 cut(s) 267, 534, 609, 626, 659, 1040
MslI CAYNNNNRTG 2 cut(s) 690, 784
Msp20I TGGCCA 1 cut(s) 344
MspA1I CMGCKG 1 cut(s) 550
MwoI GCNNNNNNNGC 3 cut(s) 34, 402, 950
NdeII GATC 3 cut(s) 110, 702, 762
NlaIII CATG 5 cut(s) 186, 648, 709, 748, 880
NlaIV GGNNCC 2 cut(s) 508, 1116
NmuCI GTSAC 2 cut(s) 67, 192
NspI RCATGY 1 cut(s) 648
PagI TCATGA 2 cut(s) 705, 744
PciI ACATGT 1 cut(s) 644
PfeI GAWTC 7 cut(s) 62, 288, 620, 717, 776, 859, 988
PkrI GCNGC 1 cut(s) 431
PleI GAGTC 1 cut(s) 251
PpsI GAGTC 1 cut(s) 251
PscI ACATGT 1 cut(s) 644
PspN4I GGNNCC 2 cut(s) 508, 1116
PspPI GGNCC 1 cut(s) 1114
PstI CTGCAG 1 cut(s) 946
PvuII CAGCTG 1 cut(s) 550
RsaI GTAC 2 cut(s) 231, 1134
RsaNI GTAC 2 cut(s) 230, 1133
RseI CAYNNNNRTG 2 cut(s) 690, 784
SaqAI TTAA 6 cut(s) 267, 534, 609, 626, 659, 1040
SatI GCNGC 1 cut(s) 430
Sau3AI GATC 3 cut(s) 110, 702, 762
Sau96I GGNCC 1 cut(s) 1114
SchI GAGTC 1 cut(s) 251
SduI GDGCHC 1 cut(s) 793
SetI ASST 8 cut(s) 174, 273, 423, 529, 552, 1003, 1073, 1138
SfaNI GCATC 2 cut(s) 104, 1158
SfcI CTRYAG 2 cut(s) 771, 942
SinI GGWCC 1 cut(s) 1114
SmiMI CAYNNNNRTG 2 cut(s) 690, 784
SmlI CTYRAG 1 cut(s) 374
SmoI CTYRAG 1 cut(s) 374
Sse9I AATT 3 cut(s) 29, 518, 1139
SsiI CCGC 1 cut(s) 88
SspI AATATT 1 cut(s) 892
SspMI CTAG 3 cut(s) 338, 897, 1002
StyI CCWWGG 1 cut(s) 1001
TaaI ACNGT 4 cut(s) 163, 559, 967, 980
TasI AATT 3 cut(s) 29, 518, 1139
TfiI GAWTC 7 cut(s) 62, 288, 620, 717, 776, 859, 988
Tru1I TTAA 6 cut(s) 267, 534, 609, 626, 659, 1040
Tru9I TTAA 6 cut(s) 267, 534, 609, 626, 659, 1040
TscAI CASTG 1 cut(s) 72
TseFI GTSAC 2 cut(s) 67, 192
TseI GCWGC 1 cut(s) 429
Tsp45I GTSAC 2 cut(s) 67, 192
TspDTI ATGAA 7 cut(s) 108, 156, 733, 761, 768, 887, 1046
TspRI CASTG 1 cut(s) 72
VpaK11BI GGWCC 1 cut(s) 1114
XagI CCTNNNNNAGG 1 cut(s) 1031
XapI RAATTY 1 cut(s) 518
XceI RCATGY 1 cut(s) 648
XcmI CCANNNNNNNNNTGG 1 cut(s) 146
XmaJI CCTAGG 1 cut(s) 1001
XmiI GTMKAC 1 cut(s) 499
XspI CTAG 3 cut(s) 338, 897, 1002
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.