FvH4_6g34011
ERF Family

Mitochondrial transcription termination factor family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000263
Physical Location & Seq
Forward (+)
26910187 .. 26912329
2143 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g34011.t3

Sequence Viewer

Length: 735 bp
ATGAACCCAACAGTCTTGCAATTAAGCTTAGAGAATACTCTCAGACCTTGTTATCGTATCACCAAAACTCTACGTATTCCCCCTGAAAAGCTTCCGTGTTTCTTTAGAGACTTCAGGCGGATTGCTTTAGGAAAATTGTGCATTGTTGCCAGCAATACTTCAATTCTGAGAGCACATGGTGTGCCAGAATCCTCTTTTCCTCTGTGGGTGGCCTTTCATTTCAATGCACTGTCCTTCGACTCTGAGAAGGTCAAAGAAAATGTCAAGAAAGTCAGGAGCATGGGATTTCAACCTCTATCTGCCACATTCATGAAAGCACTGTATGTGATATCGGTGACTGATGCATTGAAATGGCAACAGAAGATGGACTTATATAGGAAGTGGGGTCTAACTGAAGATGATGTATTGTCGGCATTTAGAAAGTATCCCTTGTTTATGAACTTCAGTGAGAAGGTTATATCGAGTAAGATGGATTTCTTTGTGAACTCAATGGGTTGCCAGCCCTCATATGTGGCTGCATGTCCTGATGTTCTATGTTATAGTTTGGAGAAGCGAATCATACCTAGGTGTTCAGTTATCAGACTTCTCCAGGTAGAAGGCTTAATCAAGGAAGATGTATCTATACAAAACATTCTGAAGTGTAATGAGGATTCGTTCTTCAAAAGGTATGTGATCAACTATCAAGAGCAAATACCTGAGCTGCTGAGCATCTCACAAGGAAAAAAATTATGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
mTERF

Protein Analysis

245

Amino Acids

28.18

Weight (kDa)

9.25

Isoelectric Point (pI)

39.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
mTERF PF02536 90 - 236 5.8e-11 mTERF
mTERF PF02536 223 - 363 4.1e-19 mTERF
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000263)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G21150 AT1G21150 AT1G21150
fragaria_vesca FvH4_4g17900 FvH4_6g26110 FvH4_6g33880 FvH4_6g33900 FvH4_6g34011 FvH4_6g34011 FvH4_6g34011 FvH4_6g34011 FvH4_6g34030 FvH4_6g34040 FvH4_6g34070 FvH4_6g34070 FvH4_7g12830
malus_domestica MD09G1189800.v1.1 MD09G1189900.v1.1 MD09G1190000.v1.1 MD14G1088800.v1.1 MD14G1088900.v1.1 MD17G1172900.v1.1
pyrus_communis pycom07g03460 pycom09g10650 pycom14g07860
rosa_chinensis RchiOBHm_Chr1g0351891 RchiOBHm_Chr1g0351901 RchiOBHm_Chr2g0143771 RchiOBHm_Chr2g0143861 RchiOBHm_Chr2g0143881 RchiOBHm_Chr2g0143941 RchiOBHm_Chr2g0143951 RchiOBHm_Chr2g0144081 RchiOBHm_Chr2g0144091 RchiOBHm_Chr2g0144211 RchiOBHm_Chr2g0144231 RchiOBHm_Chr2g0144241 RchiOBHm_Chr2g0144291 RchiOBHm_Chr2g0144301 RchiOBHm_Chr2g0144311 RchiOBHm_Chr2g0144331 RchiOBHm_Chr2g0144341 RchiOBHm_Chr4g0422021 RchiOBHm_Chr4g0422031
rosa_laevigata RLG00000007639 RLG00000020063 RLG00000020071 RLG00000020072 RLG00000020074
rosa_multiflora Rmu_co8214640.1_g000001 Rmu_co8471033.1_g000001 Rmu_sc0000789.1_g000002 Rmu_sc0001321.1_g000001 Rmu_sc0004340.1_g000001 Rmu_sc0004897.1_g000001 Rmu_sc0007105.1_g000005 Rmu_sc0009498.1_g000001 Rmu_sc0009498.1_g000002 Rmu_sc0019136.1_g000001 Rmu_sc0020327.1_g000002 Rmu_sc0020327.1_g000003 Rmu_sc0022905.1_g000001 Rmu_sc0032602.1_g000003 Rmu_sc0032602.1_g000004
rosa_roxburghii Rroxscaffold_2G00101380 Rroxscaffold_2G00101390 Rroxscaffold_2G00101400 Rroxscaffold_2G00101410 Rroxscaffold_2G00101480 Rroxscaffold_2G00101490 Rroxscaffold_4G00303470 Rroxscaffold_5G00364130 Rroxscaffold_5G00364150
rosa_rugosa Rorug01G0222600 Rorug02G0384700 Rorug02G0384800 Rorug02G0385800 Rorug02G0385900 Rorug02G0386000 Rorug02G0386000 Rorug02G0386100 Rorug04G0176700 Rorug04G0176800.1
rosa_samantha Rh1AG236500 Rh1AG236600 Rh1BG206900 Rh1CG221000 Rh1CG221100 Rh2BG444800 Rh2BG444900 Rh2BG446600 Rh2BG446700 Rh2BG447600 Rh2BG448100 Rh2BG448400 Rh2BG448500 Rh2BG448700 Rh2BG448800 Rh2CG423500 Rh2CG423600 Rh2CG424800 Rh2CG424900 Rh2CG425100 Rh2CG425200 Rh2DG455200 Rh2DG455300 Rh2DG456900 Rh2DG457000 Rh2DG457100 Rh2DG457600 Rh2DG457900 Rh2DG458000 Rh2DG458300 Rh2DG458400 Rh4AG236100 Rh4AG236200 Rh4BG239200 Rh4CG250900 Rh4CG251100
rosa_wichuraiana Rw0G000400 Rw0G015990 Rw0G017200 Rw1G020580 Rw2G033310 Rw2G035630 Rw2G035640 Rw2G035790 Rw2G035800 Rw2G035840 Rw2G036160 Rw4G019830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 118
AcuI CTGAAG 4 cut(s) 97, 414, 427, 656
AdeI CACNNNGTG 1 cut(s) 179
AgsI TTSAA 5 cut(s) 162, 223, 290, 349, 661
AjnI CCWGG 1 cut(s) 588
AluBI AGCT 3 cut(s) 27, 91, 700
AluI AGCT 3 cut(s) 27, 91, 700
Alw21I GWGCWC 1 cut(s) 175
Alw26I GTCTC 1 cut(s) 102
AoxI GGCC 1 cut(s) 210
ApeKI GCWGC 2 cut(s) 515, 700
ArsI GACNNNNNNTTYG 2 cut(s) 246, 278
Asp700I GAANNNNTTC 1 cut(s) 90
AspA2I CCTAGG 1 cut(s) 563
AsuHPI GGTGA 2 cut(s) 52, 346
AvrII CCTAGG 1 cut(s) 563
Bbv12I GWGCWC 1 cut(s) 175
BbvI GCAGC 2 cut(s) 502, 687
BccI CCATC 2 cut(s) 358, 463
BciT130I CCWGG 1 cut(s) 590
BciVI GTATCC 1 cut(s) 435
BclI TGATCA 1 cut(s) 672
BcoDI GTCTC 1 cut(s) 102
BfaI CTAG 1 cut(s) 564
BfuI GTATCC 1 cut(s) 435
BisI GCNGC 2 cut(s) 516, 701
BlnI CCTAGG 1 cut(s) 563
BlpI GCTNAGC 1 cut(s) 704
BlsI GCNGC 2 cut(s) 517, 702
Bme1390I CCNGG 1 cut(s) 590
BmrFI CCNGG 1 cut(s) 590
BmsI GCATC 2 cut(s) 331, 717
BpmI CTGGAG 1 cut(s) 572
Bpu10I CCTNAGC 1 cut(s) 696
Bpu1102I GCTNAGC 1 cut(s) 704
BsaAI YACGTR 1 cut(s) 74
BsaJI CCNNGG 1 cut(s) 563
BseBI CCWGG 1 cut(s) 590
BseDI CCNNGG 1 cut(s) 563
BseMII CTCAG 5 cut(s) 55, 158, 234, 687, 695
BseXI GCAGC 2 cut(s) 502, 687
BshFI GGCC 1 cut(s) 212
BsiHKAI GWGCWC 1 cut(s) 175
BsmAI GTCTC 1 cut(s) 102
BsnI GGCC 1 cut(s) 212
Bsp1286I GDGCHC 1 cut(s) 175
Bsp143I GATC 1 cut(s) 672
Bsp1720I GCTNAGC 1 cut(s) 704
BspACI CCGC 1 cut(s) 118
BspANI GGCC 1 cut(s) 212
BspCNI CTCAG 5 cut(s) 54, 159, 235, 688, 696
BspHI TCATGA 1 cut(s) 309
BssECI CCNNGG 1 cut(s) 563
BssMI GATC 1 cut(s) 672
BssT1I CCWWGG 1 cut(s) 563
Bst2UI CCWGG 1 cut(s) 590
Bst4CI ACNGT 3 cut(s) 13, 231, 321
BstBAI YACGTR 1 cut(s) 74
BstC8I GCNNGC 2 cut(s) 151, 500
BstDEI CTNAG 6 cut(s) 28, 41, 167, 243, 696, 704
BstKTI GATC 1 cut(s) 675
BstMAI GTCTC 1 cut(s) 102
BstMBI GATC 1 cut(s) 672
BstNI CCWGG 1 cut(s) 590
BstNSI RCATGY 1 cut(s) 522
BstSCI CCNGG 1 cut(s) 588
BstSNI TACGTA 1 cut(s) 74
BstV1I GCAGC 2 cut(s) 502, 687
BsuI GTATCC 1 cut(s) 435
BsuRI GGCC 1 cut(s) 212
BtsIMutI CAGTG 3 cut(s) 227, 317, 451
Cac8I GCNNGC 2 cut(s) 151, 500
CciI TCATGA 1 cut(s) 309
CviAII CATG 4 cut(s) 176, 280, 310, 519
CviJI RGCY 7 cut(s) 27, 91, 212, 502, 515, 600, 700
CviKI_1 RGCY 7 cut(s) 27, 91, 212, 502, 515, 600, 700
DdeI CTNAG 6 cut(s) 28, 41, 167, 243, 696, 704
DpnI GATC 1 cut(s) 674
DpnII GATC 1 cut(s) 672
DraIII CACNNNGTG 1 cut(s) 179
EciI GGCGGA 1 cut(s) 133
Eco105I TACGTA 1 cut(s) 74
Eco130I CCWWGG 1 cut(s) 563
Eco32I GATATC 1 cut(s) 330
Eco57I CTGAAG 4 cut(s) 97, 414, 427, 656
EcoRII CCWGG 1 cut(s) 588
EcoRV GATATC 1 cut(s) 330
EcoT14I CCWWGG 1 cut(s) 563
EcoT22I ATGCAT 1 cut(s) 346
ErhI CCWWGG 1 cut(s) 563
FaeI CATG 4 cut(s) 179, 283, 313, 522
FalI AAGNNNNNCTT 4 cut(s) 353, 385, 413, 445
FatI CATG 4 cut(s) 175, 279, 309, 518
FauNDI CATATG 1 cut(s) 508
FbaI TGATCA 1 cut(s) 672
Fnu4HI GCNGC 2 cut(s) 516, 701
Fsp4HI GCNGC 2 cut(s) 516, 701
FspBI CTAG 1 cut(s) 564
GluI GCNGC 2 cut(s) 516, 701
GsuI CTGGAG 1 cut(s) 572
HaeIII GGCC 1 cut(s) 212
Hin1II CATG 4 cut(s) 179, 283, 313, 522
HindIII AAGCTT 2 cut(s) 25, 89
HinfI GANTC 4 cut(s) 188, 239, 555, 650
HphI GGTGA 2 cut(s) 52, 346
Hpy166II GTNNAC 1 cut(s) 484
Hpy188I TCNGA 5 cut(s) 44, 168, 244, 581, 636
Hpy188III TCNNGA 5 cut(s) 265, 274, 310, 524, 683
Hpy8I GTNNAC 1 cut(s) 484
HpyAV CCTTC 4 cut(s) 241, 244, 445, 590
HpyCH4III ACNGT 3 cut(s) 13, 231, 321
HpyCH4IV ACGT 1 cut(s) 73
HpyCH4V TGCA 5 cut(s) 19, 141, 227, 344, 518
HpyF3I CTNAG 6 cut(s) 28, 41, 167, 243, 696, 704
HpySE526I ACGT 1 cut(s) 73
Hsp92II CATG 4 cut(s) 179, 283, 313, 522
Ksp22I TGATCA 1 cut(s) 672
Kzo9I GATC 1 cut(s) 672
LmnI GCTCC 1 cut(s) 276
Lsp1109I GCAGC 2 cut(s) 502, 687
LweI GCATC 2 cut(s) 331, 717
MaeI CTAG 1 cut(s) 564
MaeII ACGT 1 cut(s) 73
MaeIII GTNAC 1 cut(s) 334
MalI GATC 1 cut(s) 674
MboI GATC 1 cut(s) 672
MboII GAAGA 4 cut(s) 373, 407, 623, 649
MhlI GDGCHC 1 cut(s) 175
MluCI AATT 4 cut(s) 20, 134, 162, 725
MlyI GAGTC 1 cut(s) 233
MnlI CCTC 5 cut(s) 202, 210, 303, 514, 640
Mph1103I ATGCAT 1 cut(s) 346
MroXI GAANNNNTTC 1 cut(s) 90
MseI TTAA 2 cut(s) 23, 602
MslI CAYNNNNRTG 3 cut(s) 222, 308, 349
MspR9I CCNGG 1 cut(s) 590
MvaI CCWGG 1 cut(s) 590
NdeI CATATG 1 cut(s) 508
NdeII GATC 1 cut(s) 672
NlaIII CATG 4 cut(s) 179, 283, 313, 522
NmuCI GTSAC 1 cut(s) 334
NsiI ATGCAT 1 cut(s) 346
NspI RCATGY 1 cut(s) 522
PagI TCATGA 1 cut(s) 309
PdmI GAANNNNTTC 1 cut(s) 90
PfeI GAWTC 3 cut(s) 188, 555, 650
PkrI GCNGC 2 cut(s) 517, 702
PleI GAGTC 1 cut(s) 233
PpsI GAGTC 1 cut(s) 233
Ppu21I YACGTR 1 cut(s) 74
Psp6I CCWGG 1 cut(s) 588
PspGI CCWGG 1 cut(s) 588
RseI CAYNNNNRTG 3 cut(s) 222, 308, 349
SaqAI TTAA 2 cut(s) 23, 602
SatI GCNGC 2 cut(s) 516, 701
Sau3AI GATC 1 cut(s) 672
SchI GAGTC 1 cut(s) 233
ScrFI CCNGG 1 cut(s) 590
SduI GDGCHC 1 cut(s) 175
SfaNI GCATC 2 cut(s) 331, 717
SmiMI CAYNNNNRTG 3 cut(s) 222, 308, 349
SnaBI TACGTA 1 cut(s) 74
Sse9I AATT 4 cut(s) 20, 134, 162, 725
SsiI CCGC 1 cut(s) 118
SspMI CTAG 1 cut(s) 564
StyD4I CCNGG 1 cut(s) 588
StyI CCWWGG 1 cut(s) 563
TaaI ACNGT 3 cut(s) 13, 231, 321
TaiI ACGT 1 cut(s) 76
TaqI TCGA 2 cut(s) 237, 461
TasI AATT 4 cut(s) 20, 134, 162, 725
TfiI GAWTC 3 cut(s) 188, 555, 650
Tru1I TTAA 2 cut(s) 23, 602
Tru9I TTAA 2 cut(s) 23, 602
TscAI CASTG 3 cut(s) 234, 324, 451
TseFI GTSAC 1 cut(s) 334
TseI GCWGC 2 cut(s) 515, 700
Tsp45I GTSAC 1 cut(s) 334
TspDTI ATGAA 5 cut(s) 17, 206, 298, 326, 452
TspGWI ACGGA 1 cut(s) 84
TspRI CASTG 3 cut(s) 234, 324, 451
XceI RCATGY 1 cut(s) 522
XmaJI CCTAGG 1 cut(s) 563
XmnI GAANNNNTTC 1 cut(s) 90
XspI CTAG 1 cut(s) 564
Zsp2I ATGCAT 1 cut(s) 346
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.