Rorug02G0384800
ERF Family

mTERF

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000263
Physical Location & Seq
Reverse (-)
49120795 .. 49125021
4227 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0384800.1

Sequence Viewer

Length: 483 bp
ATGTGGCGGAGAATCCTCTCTTCGGCTCAGCTCAGAACCCTAACCCTAGCCGCCGCCGCCCCATGCCGATCCGCCGCCGCATCCTCTCCCGCACGCTTCTTCATCCCCAAGCCCCTTCCTCGCTACTTCAGCACCACTCCTTCTGCGGACACTTCTGTGAAGAAGAAGGTTGAGGAGATAATGCCCATTGCCACCGGCCACGAGCTAGAGGAGCTTGCAGCTGAAGTTCAGGGAAAGGATATCCTGGAAATCGACCATCCCGAAGGTCCTTTCGGCACAAAGGAAGCACCTGCAGTTGTGAAGTCCTATTACGACAAGAGAATAGTTGGATGCCCTGGTGGTGAAGGCGAGGATGAACATGATGTTGTGTGGTTTTGGCTGGAGAAGGGCAAGCCACATGAATGCCCGGTCTGTTCACAGTATTTTGCGCTTGAAGTGGTTGGACCCGGCGGATCTCCAGACCACTCTGATGATCATCACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
mTERF

Protein Analysis

160

Amino Acids

17.52

Weight (kDa)

5.46

Isoelectric Point (pI)

49.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
COX5B PF01215 64 - 152 7.9e-17 Cytochrome c oxidase subunit Vb
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000263)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G21150 AT1G21150 AT1G21150
fragaria_vesca FvH4_4g17900 FvH4_6g26110 FvH4_6g33880 FvH4_6g33900 FvH4_6g34011 FvH4_6g34011 FvH4_6g34011 FvH4_6g34011 FvH4_6g34030 FvH4_6g34040 FvH4_6g34070 FvH4_6g34070 FvH4_7g12830
malus_domestica MD09G1189800.v1.1 MD09G1189900.v1.1 MD09G1190000.v1.1 MD14G1088800.v1.1 MD14G1088900.v1.1 MD17G1172900.v1.1
pyrus_communis pycom07g03460 pycom09g10650 pycom14g07860
rosa_chinensis RchiOBHm_Chr1g0351891 RchiOBHm_Chr1g0351901 RchiOBHm_Chr2g0143771 RchiOBHm_Chr2g0143861 RchiOBHm_Chr2g0143881 RchiOBHm_Chr2g0143941 RchiOBHm_Chr2g0143951 RchiOBHm_Chr2g0144081 RchiOBHm_Chr2g0144091 RchiOBHm_Chr2g0144211 RchiOBHm_Chr2g0144231 RchiOBHm_Chr2g0144241 RchiOBHm_Chr2g0144291 RchiOBHm_Chr2g0144301 RchiOBHm_Chr2g0144311 RchiOBHm_Chr2g0144331 RchiOBHm_Chr2g0144341 RchiOBHm_Chr4g0422021 RchiOBHm_Chr4g0422031
rosa_laevigata RLG00000007639 RLG00000020063 RLG00000020071 RLG00000020072 RLG00000020074
rosa_multiflora Rmu_co8214640.1_g000001 Rmu_co8471033.1_g000001 Rmu_sc0000789.1_g000002 Rmu_sc0001321.1_g000001 Rmu_sc0004340.1_g000001 Rmu_sc0004897.1_g000001 Rmu_sc0007105.1_g000005 Rmu_sc0009498.1_g000001 Rmu_sc0009498.1_g000002 Rmu_sc0019136.1_g000001 Rmu_sc0020327.1_g000002 Rmu_sc0020327.1_g000003 Rmu_sc0022905.1_g000001 Rmu_sc0032602.1_g000003 Rmu_sc0032602.1_g000004
rosa_roxburghii Rroxscaffold_2G00101380 Rroxscaffold_2G00101390 Rroxscaffold_2G00101400 Rroxscaffold_2G00101410 Rroxscaffold_2G00101480 Rroxscaffold_2G00101490 Rroxscaffold_4G00303470 Rroxscaffold_5G00364130 Rroxscaffold_5G00364150
rosa_rugosa Rorug01G0222600 Rorug02G0384700 Rorug02G0384800 Rorug02G0385800 Rorug02G0385900 Rorug02G0386000 Rorug02G0386000 Rorug02G0386100 Rorug04G0176700 Rorug04G0176800.1
rosa_samantha Rh1AG236500 Rh1AG236600 Rh1BG206900 Rh1CG221000 Rh1CG221100 Rh2BG444800 Rh2BG444900 Rh2BG446600 Rh2BG446700 Rh2BG447600 Rh2BG448100 Rh2BG448400 Rh2BG448500 Rh2BG448700 Rh2BG448800 Rh2CG423500 Rh2CG423600 Rh2CG424800 Rh2CG424900 Rh2CG425100 Rh2CG425200 Rh2DG455200 Rh2DG455300 Rh2DG456900 Rh2DG457000 Rh2DG457100 Rh2DG457600 Rh2DG457900 Rh2DG458000 Rh2DG458300 Rh2DG458400 Rh4AG236100 Rh4AG236200 Rh4BG239200 Rh4CG250900 Rh4CG251100
rosa_wichuraiana Rw0G000400 Rw0G015990 Rw0G017200 Rw1G020580 Rw2G033310 Rw2G035630 Rw2G035640 Rw2G035790 Rw2G035800 Rw2G035840 Rw2G036160 Rw4G019830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 298
Acc36I ACCTGC 1 cut(s) 298
AclWI GGATC 2 cut(s) 63, 460
AcoI YGGCCR 1 cut(s) 196
AcuI CTGAAG 2 cut(s) 112, 243
AfiI CCNNNNNNNGG 1 cut(s) 22
AgsI TTSAA 1 cut(s) 434
AjnI CCWGG 2 cut(s) 243, 334
AleI CACNNNNGTG 1 cut(s) 155
AluBI AGCT 4 cut(s) 31, 205, 214, 221
AluI AGCT 4 cut(s) 31, 205, 214, 221
AlwI GGATC 2 cut(s) 63, 460
AoxI GGCC 1 cut(s) 196
ApeKI GCWGC 1 cut(s) 218
AspLEI GCGC 1 cut(s) 430
AspS9I GGNCC 2 cut(s) 266, 443
AsuC2I CCSGG 2 cut(s) 407, 447
AsuHPI GGTGA 1 cut(s) 353
AvaII GGWCC 2 cut(s) 266, 443
BarI GAAGNNNNNNTAC 2 cut(s) 293, 325
BauI CACGAG 1 cut(s) 200
BbvI GCAGC 1 cut(s) 230
BccI CCATC 1 cut(s) 264
BciT130I CCWGG 2 cut(s) 245, 336
BclI TGATCA 1 cut(s) 472
BcnI CCSGG 2 cut(s) 407, 447
BfaI CTAG 2 cut(s) 47, 206
BfmI CTRYAG 1 cut(s) 291
BfuAI ACCTGC 1 cut(s) 298
BisI GCNGC 6 cut(s) 51, 54, 57, 75, 78, 219
BlpI GCTNAGC 1 cut(s) 27
BlsI GCNGC 6 cut(s) 52, 55, 58, 76, 79, 220
Bme1390I CCNGG 4 cut(s) 245, 336, 407, 447
Bme18I GGWCC 2 cut(s) 266, 443
BmgT120I GGNCC 2 cut(s) 266, 443
BmiI GGNNCC 1 cut(s) 445
BmrFI CCNGG 4 cut(s) 245, 336, 407, 447
BmsI GCATC 2 cut(s) 89, 320
BpmI CTGGAG 2 cut(s) 401, 441
Bpu1102I GCTNAGC 1 cut(s) 27
BpuMI CCSGG 2 cut(s) 407, 447
BsaBI GATNNNNATC 1 cut(s) 474
BsaJI CCNNGG 1 cut(s) 334
Bsc4I CCNNNNNNNGG 1 cut(s) 22
Bse118I RCCGGY 1 cut(s) 194
Bse3DI GCAATG 1 cut(s) 186
Bse8I GATNNNNATC 1 cut(s) 474
BseBI CCWGG 2 cut(s) 245, 336
BseDI CCNNGG 1 cut(s) 334
BseGI GGATG 5 cut(s) 80, 102, 256, 335, 358
BseJI GATNNNNATC 1 cut(s) 474
BseLI CCNNNNNNNGG 1 cut(s) 22
BseMI GCAATG 1 cut(s) 186
BseMII CTCAG 2 cut(s) 41, 46
BseRI GAGGAG 2 cut(s) 188, 224
BseXI GCAGC 1 cut(s) 230
BshFI GGCC 1 cut(s) 198
BsiSI CCGG 3 cut(s) 195, 407, 447
BslI CCNNNNNNNGG 1 cut(s) 22
BsmI GAATGC 1 cut(s) 407
BsnI GGCC 1 cut(s) 198
Bsp143I GATC 3 cut(s) 68, 452, 472
Bsp1720I GCTNAGC 1 cut(s) 27
BspANI GGCC 1 cut(s) 198
BspCNI CTCAG 2 cut(s) 40, 45
BspLI GGNNCC 1 cut(s) 445
BspMAI CTGCAG 1 cut(s) 295
BspMI ACCTGC 1 cut(s) 298
BspPI GGATC 2 cut(s) 63, 460
BsrDI GCAATG 1 cut(s) 186
BsrFI RCCGGY 1 cut(s) 194
BssAI RCCGGY 1 cut(s) 194
BssECI CCNNGG 1 cut(s) 334
BssMI GATC 3 cut(s) 68, 452, 472
BssSI CACGAG 1 cut(s) 200
Bst2BI CACGAG 1 cut(s) 200
Bst2UI CCWGG 2 cut(s) 245, 336
Bst4CI ACNGT 1 cut(s) 420
Bst6I CTCTTC 1 cut(s) 25
BstC8I GCNNGC 3 cut(s) 94, 216, 392
BstDEI CTNAG 2 cut(s) 27, 32
BstF5I GGATG 5 cut(s) 80, 102, 256, 335, 358
BstHHI GCGC 1 cut(s) 430
BstKTI GATC 3 cut(s) 71, 455, 475
BstMBI GATC 3 cut(s) 68, 452, 472
BstMWI GCNNNNNNNGC 3 cut(s) 56, 129, 211
BstNI CCWGG 2 cut(s) 245, 336
BstSCI CCNGG 4 cut(s) 243, 334, 405, 445
BstSFI CTRYAG 1 cut(s) 291
BstV1I GCAGC 1 cut(s) 230
BstX2I RGATCY 1 cut(s) 452
BstYI RGATCY 1 cut(s) 452
BsuRI GGCC 1 cut(s) 198
BtsCI GGATG 5 cut(s) 80, 102, 256, 335, 358
BveI ACCTGC 1 cut(s) 298
Cac8I GCNNGC 3 cut(s) 94, 216, 392
CfoI GCGC 1 cut(s) 430
Cfr10I RCCGGY 1 cut(s) 194
Cfr13I GGNCC 2 cut(s) 266, 443
CviAII CATG 3 cut(s) 63, 359, 398
DdeI CTNAG 2 cut(s) 27, 32
DpnI GATC 3 cut(s) 70, 454, 474
DpnII GATC 3 cut(s) 68, 452, 472
EaeI YGGCCR 1 cut(s) 196
Eam1104I CTCTTC 1 cut(s) 25
EarI CTCTTC 1 cut(s) 25
EciI GGCGGA 3 cut(s) 22, 61, 465
Eco32I GATATC 1 cut(s) 241
Eco47I GGWCC 2 cut(s) 266, 443
Eco57I CTGAAG 2 cut(s) 112, 243
EcoO109I RGGNCCY 1 cut(s) 266
EcoRII CCWGG 2 cut(s) 243, 334
EcoRV GATATC 1 cut(s) 241
FaeI CATG 3 cut(s) 66, 362, 401
FaiI YATR 3 cut(s) 64, 360, 399
FatI CATG 3 cut(s) 62, 358, 397
FauI CCCGC 1 cut(s) 97
FbaI TGATCA 1 cut(s) 472
Fnu4HI GCNGC 6 cut(s) 51, 54, 57, 75, 78, 219
FokI GGATG 5 cut(s) 67, 89, 243, 342, 365
Fsp4HI GCNGC 6 cut(s) 51, 54, 57, 75, 78, 219
FspBI CTAG 2 cut(s) 47, 206
GlaI GCGC 1 cut(s) 429
GluI GCNGC 6 cut(s) 51, 54, 57, 75, 78, 219
GsuI CTGGAG 2 cut(s) 401, 441
HaeIII GGCC 1 cut(s) 198
HapII CCGG 3 cut(s) 195, 407, 447
HhaI GCGC 1 cut(s) 430
Hin1II CATG 3 cut(s) 66, 362, 401
Hin6I GCGC 1 cut(s) 428
HinP1I GCGC 1 cut(s) 428
HinfI GANTC 1 cut(s) 12
HpaII CCGG 3 cut(s) 195, 407, 447
HphI GGTGA 1 cut(s) 353
Hpy166II GTNNAC 1 cut(s) 416
Hpy188I TCNGA 2 cut(s) 35, 469
Hpy188III TCNNGA 2 cut(s) 260, 458
Hpy8I GTNNAC 1 cut(s) 416
HpyAV CCTTC 6 cut(s) 125, 150, 160, 257, 338, 379
HpyCH4III ACNGT 1 cut(s) 420
HpyCH4V TGCA 2 cut(s) 218, 293
HpyF10VI GCNNNNNNNGC 3 cut(s) 56, 129, 211
HpyF3I CTNAG 2 cut(s) 27, 32
Hsp92II CATG 3 cut(s) 66, 362, 401
HspAI GCGC 1 cut(s) 428
Ksp22I TGATCA 1 cut(s) 472
Kzo9I GATC 3 cut(s) 68, 452, 472
LmnI GCTCC 1 cut(s) 211
Lsp1109I GCAGC 1 cut(s) 230
LweI GCATC 2 cut(s) 89, 320
MaeI CTAG 2 cut(s) 47, 206
MalI GATC 3 cut(s) 70, 454, 474
MboI GATC 3 cut(s) 68, 452, 472
MboII GAAGA 4 cut(s) 12, 91, 172, 175
MflI RGATCY 1 cut(s) 452
MmeI TCCRAC 2 cut(s) 307, 421
MnlI CCTC 6 cut(s) 26, 94, 129, 166, 202, 343
MslI CAYNNNNRTG 3 cut(s) 155, 400, 468
MspA1I CMGCKG 1 cut(s) 221
MspI CCGG 3 cut(s) 195, 407, 447
MspR9I CCNGG 4 cut(s) 245, 336, 407, 447
Mva1269I GAATGC 1 cut(s) 407
MvaI CCWGG 2 cut(s) 245, 336
MwoI GCNNNNNNNGC 3 cut(s) 56, 129, 211
NciI CCSGG 2 cut(s) 407, 447
NdeII GATC 3 cut(s) 68, 452, 472
NlaIII CATG 3 cut(s) 66, 362, 401
NlaIV GGNNCC 1 cut(s) 445
OliI CACNNNNGTG 1 cut(s) 155
PaqCI CACCTGC 1 cut(s) 298
PcsI WCGNNNNNNNCGW 1 cut(s) 258
PctI GAATGC 1 cut(s) 407
PfeI GAWTC 1 cut(s) 12
PfoI TCCNGGA 1 cut(s) 243
PkrI GCNGC 6 cut(s) 52, 55, 58, 76, 79, 220
PpuMI RGGWCCY 1 cut(s) 266
Psp5II RGGWCCY 1 cut(s) 266
Psp6I CCWGG 2 cut(s) 243, 334
PspGI CCWGG 2 cut(s) 243, 334
PspN4I GGNNCC 1 cut(s) 445
PspPI GGNCC 2 cut(s) 266, 443
PspPPI RGGWCCY 1 cut(s) 266
PstI CTGCAG 1 cut(s) 295
PsuI RGATCY 1 cut(s) 452
PvuII CAGCTG 1 cut(s) 221
RseI CAYNNNNRTG 3 cut(s) 155, 400, 468
SatI GCNGC 6 cut(s) 51, 54, 57, 75, 78, 219
Sau3AI GATC 3 cut(s) 68, 452, 472
Sau96I GGNCC 2 cut(s) 266, 443
ScrFI CCNGG 4 cut(s) 245, 336, 407, 447
SetI ASST 7 cut(s) 33, 171, 207, 216, 223, 268, 292
SfaNI GCATC 2 cut(s) 89, 320
SfcI CTRYAG 1 cut(s) 291
SinI GGWCC 2 cut(s) 266, 443
SmiMI CAYNNNNRTG 3 cut(s) 155, 400, 468
SspMI CTAG 2 cut(s) 47, 206
StyD4I CCNGG 4 cut(s) 243, 334, 405, 445
TaaI ACNGT 1 cut(s) 420
TaqI TCGA 1 cut(s) 252
TauI GCSGC 5 cut(s) 53, 56, 59, 77, 80
TfiI GAWTC 1 cut(s) 12
TseI GCWGC 1 cut(s) 218
TspDTI ATGAA 3 cut(s) 91, 369, 414
VpaK11BI GGWCC 2 cut(s) 266, 443
XspI CTAG 2 cut(s) 47, 206
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.