Rmu_sc0004340.1_g000001
ERF Family

Mitochondrial transcription termination factor family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004340.1
OG0000263
Physical Location & Seq
Forward (+)
12 .. 302
291 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004340.1_g000001.1.cds

Sequence Viewer

Length: 291 bp
atgggttggcagccagccaatgtagctcaacatcccgctgttctaacttatagtttggagaagtggatcacacctcggtgttcggttattagaattctgctgttgaagggcttaataagggagggagaatattctattgcttacatgatgttcagaagagaccagttcttggataggtttgtgaacaagtatcaagagcaagtacccgaattattgagcgtctatcaagggaaaattggtctagcagaactgggcttaggatttgaggaaaaaggagtgaaagaagtgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
mTERF

Protein Analysis

96

Amino Acids

11.1

Weight (kDa)

7.85

Isoelectric Point (pI)

33.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000263)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G21150 AT1G21150 AT1G21150
fragaria_vesca FvH4_4g17900 FvH4_6g26110 FvH4_6g33880 FvH4_6g33900 FvH4_6g34011 FvH4_6g34011 FvH4_6g34011 FvH4_6g34011 FvH4_6g34030 FvH4_6g34040 FvH4_6g34070 FvH4_6g34070 FvH4_7g12830
malus_domestica MD09G1189800.v1.1 MD09G1189900.v1.1 MD09G1190000.v1.1 MD14G1088800.v1.1 MD14G1088900.v1.1 MD17G1172900.v1.1
pyrus_communis pycom07g03460 pycom09g10650 pycom14g07860
rosa_chinensis RchiOBHm_Chr1g0351891 RchiOBHm_Chr1g0351901 RchiOBHm_Chr2g0143771 RchiOBHm_Chr2g0143861 RchiOBHm_Chr2g0143881 RchiOBHm_Chr2g0143941 RchiOBHm_Chr2g0143951 RchiOBHm_Chr2g0144081 RchiOBHm_Chr2g0144091 RchiOBHm_Chr2g0144211 RchiOBHm_Chr2g0144231 RchiOBHm_Chr2g0144241 RchiOBHm_Chr2g0144291 RchiOBHm_Chr2g0144301 RchiOBHm_Chr2g0144311 RchiOBHm_Chr2g0144331 RchiOBHm_Chr2g0144341 RchiOBHm_Chr4g0422021 RchiOBHm_Chr4g0422031
rosa_laevigata RLG00000007639 RLG00000020063 RLG00000020071 RLG00000020072 RLG00000020074
rosa_multiflora Rmu_co8214640.1_g000001 Rmu_co8471033.1_g000001 Rmu_sc0000789.1_g000002 Rmu_sc0001321.1_g000001 Rmu_sc0004340.1_g000001 Rmu_sc0004897.1_g000001 Rmu_sc0007105.1_g000005 Rmu_sc0009498.1_g000001 Rmu_sc0009498.1_g000002 Rmu_sc0019136.1_g000001 Rmu_sc0020327.1_g000002 Rmu_sc0020327.1_g000003 Rmu_sc0022905.1_g000001 Rmu_sc0032602.1_g000003 Rmu_sc0032602.1_g000004
rosa_roxburghii Rroxscaffold_2G00101380 Rroxscaffold_2G00101390 Rroxscaffold_2G00101400 Rroxscaffold_2G00101410 Rroxscaffold_2G00101480 Rroxscaffold_2G00101490 Rroxscaffold_4G00303470 Rroxscaffold_5G00364130 Rroxscaffold_5G00364150
rosa_rugosa Rorug01G0222600 Rorug02G0384700 Rorug02G0384800 Rorug02G0385800 Rorug02G0385900 Rorug02G0386000 Rorug02G0386000 Rorug02G0386100 Rorug04G0176700 Rorug04G0176800.1
rosa_samantha Rh1AG236500 Rh1AG236600 Rh1BG206900 Rh1CG221000 Rh1CG221100 Rh2BG444800 Rh2BG444900 Rh2BG446600 Rh2BG446700 Rh2BG447600 Rh2BG448100 Rh2BG448400 Rh2BG448500 Rh2BG448700 Rh2BG448800 Rh2CG423500 Rh2CG423600 Rh2CG424800 Rh2CG424900 Rh2CG425100 Rh2CG425200 Rh2DG455200 Rh2DG455300 Rh2DG456900 Rh2DG457000 Rh2DG457100 Rh2DG457600 Rh2DG457900 Rh2DG458000 Rh2DG458300 Rh2DG458400 Rh4AG236100 Rh4AG236200 Rh4BG239200 Rh4CG250900 Rh4CG251100
rosa_wichuraiana Rw0G000400 Rw0G015990 Rw0G017200 Rw1G020580 Rw2G033310 Rw2G035630 Rw2G035640 Rw2G035790 Rw2G035800 Rw2G035840 Rw2G036160 Rw4G019830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 169
AciI CCGC 1 cut(s) 36
AclWI GGATC 1 cut(s) 74
AcsI RAATTY 1 cut(s) 93
AfaI GTAC 1 cut(s) 204
AfiI CCNNNNNNNGG 1 cut(s) 169
AgsI TTSAA 1 cut(s) 106
AleI CACNNNNGTG 1 cut(s) 76
AluBI AGCT 1 cut(s) 26
AluI AGCT 1 cut(s) 26
Alw26I GTCTC 1 cut(s) 153
AlwI GGATC 1 cut(s) 74
ApeKI GCWGC 1 cut(s) 10
ApoI RAATTY 1 cut(s) 93
BbvI GCAGC 1 cut(s) 22
BcoDI GTCTC 1 cut(s) 153
BfaI CTAG 1 cut(s) 242
BisI GCNGC 1 cut(s) 11
BlsI GCNGC 1 cut(s) 12
BmrI ACTGGG 1 cut(s) 260
BmuI ACTGGG 1 cut(s) 260
Bpu10I CCTNAGC 1 cut(s) 256
BsaI GGTCTC 1 cut(s) 153
BsaJI CCNNGG 1 cut(s) 74
Bsc4I CCNNNNNNNGG 1 cut(s) 169
Bse1I ACTGG 2 cut(s) 163, 255
BseDI CCNNGG 1 cut(s) 74
BseGI GGATG 1 cut(s) 31
BseLI CCNNNNNNNGG 1 cut(s) 169
BseNI ACTGG 2 cut(s) 163, 255
BseXI GCAGC 1 cut(s) 22
BslI CCNNNNNNNGG 1 cut(s) 169
BsmAI GTCTC 1 cut(s) 153
Bso31I GGTCTC 1 cut(s) 153
Bsp143I GATC 1 cut(s) 66
BspACI CCGC 1 cut(s) 36
BspPI GGATC 1 cut(s) 74
BspTNI GGTCTC 1 cut(s) 153
BsrI ACTGG 2 cut(s) 163, 255
BssECI CCNNGG 1 cut(s) 74
BssMI GATC 1 cut(s) 66
Bst6I CTCTTC 1 cut(s) 151
BstC8I GCNNGC 1 cut(s) 15
BstDEI CTNAG 1 cut(s) 256
BstF5I GGATG 1 cut(s) 31
BstKTI GATC 1 cut(s) 69
BstMAI GTCTC 1 cut(s) 153
BstMBI GATC 1 cut(s) 66
BstMWI GCNNNNNNNGC 1 cut(s) 23
BstV1I GCAGC 1 cut(s) 22
BtsCI GGATG 1 cut(s) 31
Cac8I GCNNGC 1 cut(s) 15
CseI GACGC 1 cut(s) 208
Csp6I GTAC 1 cut(s) 203
CviAII CATG 1 cut(s) 145
CviJI RGCY 5 cut(s) 13, 17, 26, 111, 255
CviKI_1 RGCY 5 cut(s) 13, 17, 26, 111, 255
CviQI GTAC 1 cut(s) 203
DdeI CTNAG 1 cut(s) 256
DpnI GATC 1 cut(s) 68
DpnII GATC 1 cut(s) 66
Eam1104I CTCTTC 1 cut(s) 151
EarI CTCTTC 1 cut(s) 151
Eco31I GGTCTC 1 cut(s) 153
EcoRI GAATTC 1 cut(s) 93
FaeI CATG 1 cut(s) 148
FaiI YATR 2 cut(s) 51, 146
FatI CATG 1 cut(s) 144
FauI CCCGC 1 cut(s) 43
Fnu4HI GCNGC 1 cut(s) 11
FokI GGATG 1 cut(s) 18
Fsp4HI GCNGC 1 cut(s) 11
FspBI CTAG 1 cut(s) 242
GluI GCNGC 1 cut(s) 11
HgaI GACGC 1 cut(s) 208
Hin1II CATG 1 cut(s) 148
Hpy166II GTNNAC 1 cut(s) 184
Hpy188I TCNGA 1 cut(s) 155
Hpy188III TCNNGA 1 cut(s) 194
Hpy8I GTNNAC 1 cut(s) 184
HpyAV CCTTC 1 cut(s) 100
HpyF10VI GCNNNNNNNGC 1 cut(s) 23
HpyF3I CTNAG 1 cut(s) 256
Hsp92II CATG 1 cut(s) 148
Kzo9I GATC 1 cut(s) 66
LpnPI CCDG 3 cut(s) 27, 176, 236
Lsp1109I GCAGC 1 cut(s) 22
MaeI CTAG 1 cut(s) 242
MalI GATC 1 cut(s) 68
MboI GATC 1 cut(s) 66
MboII GAAGA 1 cut(s) 168
MluCI AATT 3 cut(s) 93, 209, 234
MnlI CCTC 3 cut(s) 84, 115, 259
MseI TTAA 1 cut(s) 113
MslI CAYNNNNRTG 1 cut(s) 76
MspA1I CMGCKG 1 cut(s) 38
MwoI GCNNNNNNNGC 1 cut(s) 23
NdeII GATC 1 cut(s) 66
NlaIII CATG 1 cut(s) 148
OliI CACNNNNGTG 1 cut(s) 76
PflMI CCANNNNNTGG 1 cut(s) 169
PkrI GCNGC 1 cut(s) 12
RsaI GTAC 1 cut(s) 204
RsaNI GTAC 1 cut(s) 203
RseI CAYNNNNRTG 1 cut(s) 76
SaqAI TTAA 1 cut(s) 113
SatI GCNGC 1 cut(s) 11
Sau3AI GATC 1 cut(s) 66
SetI ASST 3 cut(s) 28, 76, 179
SmiMI CAYNNNNRTG 1 cut(s) 76
Sse9I AATT 3 cut(s) 93, 209, 234
SsiI CCGC 1 cut(s) 36
SspI AATATT 1 cut(s) 131
SspMI CTAG 1 cut(s) 242
TasI AATT 3 cut(s) 93, 209, 234
Tru1I TTAA 1 cut(s) 113
Tru9I TTAA 1 cut(s) 113
TseI GCWGC 1 cut(s) 10
Van91I CCANNNNNTGG 1 cut(s) 169
XapI RAATTY 1 cut(s) 93
XspI CTAG 1 cut(s) 242
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.