Rh4AG236100
ERF Family

Mitochondrial transcription termination factor family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0000263
Physical Location & Seq
Forward (+)
54123801 .. 54126194
2394 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG236100.1

Sequence Viewer

Length: 1224 bp
ATGTTTGGTTTTTGCTGTAAAAGATTGCAATTACTGCTTCCAAGTTGTAGCACTTCTGTTGATTCAGTGACCCATTTACATTGCTTCCGCAAAGCATCTCACTTTAGCAGTTCATATTCATCCAAATCGTTATTAGGTGGTAAAATAGATAAACCCCAAGAGAAAGATGGCTCTTTTACAGTTTCATACCTTGTAAACTCATGTGGGTTGTCACCAGAAGTCGCTCTCTCTTTGTCCAAGAAGAGGGTACACCTCAAATCCACAGAGAAACCAGATTCGGTTATTAAGCTTCTGAAACACTATGGATTCAATGACACCGACATATCCCAACTTGTTAAGAAATTCCCACAAGTGCTTGGGGCTAAACCTGAGAAGACCATTTTGCCCAAACTAGAGTTTTTCAGTTCTATTGGCCTCTCAGGCATTGACATTGCTCGGGCTCTTTGCAGCAACCCAAGTATTTTGAAACGAAATGTAGATAGAAGTCTTAGGCCGTGTTATGATATCATCAAAAGTATACTTGTTTCTGACTTAGAGGTTGCTGTTTTCTTTAAGAATTCCTATCAGCTGTTGACGGTCAAATCAGTAAGCAACATTGCTCAGAATGTTTCAGTTCTGAGAAAACTTAAGGTGCCAGAACCTTCAATCTCTTACTATGCTACGTGTCAGCCCTTTGTAATGTCCCTTGAAAATGAGAAGTTTCATGAAGCTGTCAAGAGGGTCATGAGTTTGGGATTCCACCCTTCGTATGCAACGACATTCATGAAAGCACTATTTGTGATCTCTATAACTGATTCATCAAAATGGGCAGAAAAGATGGATTTCTATAAAAAGTGTGGTTGGACTGAAGATGACTTTTTGGTGGCATTTAGAAAGAATCCCTTCTTTATGAACATGACAGAGAAGAATATTTCTGGTAAAATGGATTTGATTGTCAACAAAATGGCTTTGGTTCAGCCTGCAGATTTGGCTCACTATCCGACTGTCCTAACTTATAGTTTGGAGAAATGGATAATACCTAGGTGTTCAGTTATTAGAGTTCTCCTATTGAAGGGTTTAATAACAAGGGGAGAATTCAATTTCAACACTTTGATGGGCCTCAATAAGAAGAACTTCTTGAAGAGGTTTGTGGTGCAATATCAAGAGCAAGTACCTGATTTACTCAGCATCTTTGAAGGGAAAATGGGTCTTGCGGAACTGGGATTAGGATTTGAGGAAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
mTERF

Protein Analysis

407

Amino Acids

45.98

Weight (kDa)

9.33

Isoelectric Point (pI)

42.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
mTERF PF02536 95 - 308 6.2e-25 mTERF
mTERF PF02536 224 - 372 6.2e-13 mTERF
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000263)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G21150 AT1G21150 AT1G21150
fragaria_vesca FvH4_4g17900 FvH4_6g26110 FvH4_6g33880 FvH4_6g33900 FvH4_6g34011 FvH4_6g34011 FvH4_6g34011 FvH4_6g34011 FvH4_6g34030 FvH4_6g34040 FvH4_6g34070 FvH4_6g34070 FvH4_7g12830
malus_domestica MD09G1189800.v1.1 MD09G1189900.v1.1 MD09G1190000.v1.1 MD14G1088800.v1.1 MD14G1088900.v1.1 MD17G1172900.v1.1
pyrus_communis pycom07g03460 pycom09g10650 pycom14g07860
rosa_chinensis RchiOBHm_Chr1g0351891 RchiOBHm_Chr1g0351901 RchiOBHm_Chr2g0143771 RchiOBHm_Chr2g0143861 RchiOBHm_Chr2g0143881 RchiOBHm_Chr2g0143941 RchiOBHm_Chr2g0143951 RchiOBHm_Chr2g0144081 RchiOBHm_Chr2g0144091 RchiOBHm_Chr2g0144211 RchiOBHm_Chr2g0144231 RchiOBHm_Chr2g0144241 RchiOBHm_Chr2g0144291 RchiOBHm_Chr2g0144301 RchiOBHm_Chr2g0144311 RchiOBHm_Chr2g0144331 RchiOBHm_Chr2g0144341 RchiOBHm_Chr4g0422021 RchiOBHm_Chr4g0422031
rosa_laevigata RLG00000007639 RLG00000020063 RLG00000020071 RLG00000020072 RLG00000020074
rosa_multiflora Rmu_co8214640.1_g000001 Rmu_co8471033.1_g000001 Rmu_sc0000789.1_g000002 Rmu_sc0001321.1_g000001 Rmu_sc0004340.1_g000001 Rmu_sc0004897.1_g000001 Rmu_sc0007105.1_g000005 Rmu_sc0009498.1_g000001 Rmu_sc0009498.1_g000002 Rmu_sc0019136.1_g000001 Rmu_sc0020327.1_g000002 Rmu_sc0020327.1_g000003 Rmu_sc0022905.1_g000001 Rmu_sc0032602.1_g000003 Rmu_sc0032602.1_g000004
rosa_roxburghii Rroxscaffold_2G00101380 Rroxscaffold_2G00101390 Rroxscaffold_2G00101400 Rroxscaffold_2G00101410 Rroxscaffold_2G00101480 Rroxscaffold_2G00101490 Rroxscaffold_4G00303470 Rroxscaffold_5G00364130 Rroxscaffold_5G00364150
rosa_rugosa Rorug01G0222600 Rorug02G0384700 Rorug02G0384800 Rorug02G0385800 Rorug02G0385900 Rorug02G0386000 Rorug02G0386000 Rorug02G0386100 Rorug04G0176700 Rorug04G0176800.1
rosa_samantha Rh1AG236500 Rh1AG236600 Rh1BG206900 Rh1CG221000 Rh1CG221100 Rh2BG444800 Rh2BG444900 Rh2BG446600 Rh2BG446700 Rh2BG447600 Rh2BG448100 Rh2BG448400 Rh2BG448500 Rh2BG448700 Rh2BG448800 Rh2CG423500 Rh2CG423600 Rh2CG424800 Rh2CG424900 Rh2CG425100 Rh2CG425200 Rh2DG455200 Rh2DG455300 Rh2DG456900 Rh2DG457000 Rh2DG457100 Rh2DG457600 Rh2DG457900 Rh2DG458000 Rh2DG458300 Rh2DG458400 Rh4AG236100 Rh4AG236200 Rh4BG239200 Rh4CG250900 Rh4CG251100
rosa_wichuraiana Rw0G000400 Rw0G015990 Rw0G017200 Rw1G020580 Rw2G033310 Rw2G035630 Rw2G035640 Rw2G035790 Rw2G035800 Rw2G035840 Rw2G036160 Rw4G019830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 631
AccI GTMKAC 1 cut(s) 517
AciI CCGC 2 cut(s) 88, 1193
AcsI RAATTY 3 cut(s) 341, 556, 1073
AcuI CTGAAG 1 cut(s) 867
AfaI GTAC 2 cut(s) 249, 1152
AfiI CCNNNNNNNGG 2 cut(s) 243, 1051
AflII CTTAAG 1 cut(s) 626
AflIII ACRYGT 1 cut(s) 662
AgsI TTSAA 9 cut(s) 310, 466, 645, 689, 1051, 1078, 1084, 1120, 1175
AluBI AGCT 3 cut(s) 289, 568, 710
AluI AGCT 3 cut(s) 289, 568, 710
Ama87I CYCGRG 1 cut(s) 435
AoxI GGCC 3 cut(s) 412, 491, 1096
ApeKI GCWGC 1 cut(s) 447
ApoI RAATTY 3 cut(s) 341, 556, 1073
Asp700I GAANNNNTTC 2 cut(s) 881, 1112
AspA2I CCTAGG 1 cut(s) 1019
AspS9I GGNCC 1 cut(s) 1096
AsuHPI GGTGA 1 cut(s) 204
AvaI CYCGRG 1 cut(s) 435
AvrII CCTAGG 1 cut(s) 1019
BanI GGYRCC 1 cut(s) 631
BanII GRGCYC 1 cut(s) 442
BbsI GAAGAC 1 cut(s) 380
BbvI GCAGC 1 cut(s) 459
BccI CCATC 3 cut(s) 161, 811, 1087
BceAI ACGGC 1 cut(s) 478
BfaI CTAG 2 cut(s) 392, 1020
BfmI CTRYAG 1 cut(s) 960
BfrI CTTAAG 1 cut(s) 626
BglI GCCNNNNNGGC 1 cut(s) 420
BisI GCNGC 1 cut(s) 448
BlnI CCTAGG 1 cut(s) 1019
BlsI GCNGC 1 cut(s) 449
BmeT110I CYCGRG 1 cut(s) 435
BmgT120I GGNCC 1 cut(s) 1096
BmiI GGNNCC 1 cut(s) 633
BmrI ACTGGG 1 cut(s) 1208
BmsI GCATC 2 cut(s) 104, 1176
BmuI ACTGGG 1 cut(s) 1208
BpiI GAAGAC 1 cut(s) 380
BsaAI YACGTR 1 cut(s) 663
BsaJI CCNNGG 1 cut(s) 1019
Bsc4I CCNNNNNNNGG 2 cut(s) 243, 1051
Bse1I ACTGG 1 cut(s) 1203
Bse3DI GCAATG 3 cut(s) 79, 429, 594
BseDI CCNNGG 1 cut(s) 1019
BseGI GGATG 1 cut(s) 119
BseLI CCNNNNNNNGG 2 cut(s) 243, 1051
BseMI GCAATG 3 cut(s) 79, 429, 594
BseMII CTCAG 5 cut(s) 360, 432, 608, 614, 1177
BseNI ACTGG 1 cut(s) 1203
BseXI GCAGC 1 cut(s) 459
BshFI GGCC 3 cut(s) 414, 493, 1098
BshNI GGYRCC 1 cut(s) 631
BsiHKCI CYCGRG 1 cut(s) 435
BslFI GGGAC 1 cut(s) 667
BslI CCNNNNNNNGG 2 cut(s) 243, 1051
BsmFI GGGAC 1 cut(s) 667
BsnI GGCC 3 cut(s) 414, 493, 1098
BsoBI CYCGRG 1 cut(s) 435
Bsp1286I GDGCHC 1 cut(s) 442
Bsp143I GATC 1 cut(s) 780
BspACI CCGC 2 cut(s) 88, 1193
BspANI GGCC 3 cut(s) 414, 493, 1098
BspCNI CTCAG 5 cut(s) 361, 431, 609, 613, 1176
BspHI TCATGA 3 cut(s) 703, 723, 762
BspLI GGNNCC 1 cut(s) 633
BspMAI CTGCAG 1 cut(s) 964
BspT107I GGYRCC 1 cut(s) 631
BspTI CTTAAG 1 cut(s) 626
BsrDI GCAATG 3 cut(s) 79, 429, 594
BsrI ACTGG 1 cut(s) 1203
BssECI CCNNGG 1 cut(s) 1019
BssMI GATC 1 cut(s) 780
BssNAI GTATAC 1 cut(s) 518
BssT1I CCWWGG 1 cut(s) 1019
Bst1107I GTATAC 1 cut(s) 518
Bst4CI ACNGT 3 cut(s) 181, 577, 985
Bst6I CTCTTC 2 cut(s) 236, 1115
BstAFI CTTAAG 1 cut(s) 626
BstAPI GCANNNNNTGC 1 cut(s) 34
BstBAI YACGTR 1 cut(s) 663
BstC8I GCNNGC 1 cut(s) 960
BstDEI CTNAG 7 cut(s) 369, 418, 488, 532, 600, 617, 1163
BstENI CCTNNNNNAGG 1 cut(s) 1049
BstF5I GGATG 1 cut(s) 119
BstKTI GATC 1 cut(s) 783
BstMBI GATC 1 cut(s) 780
BstMWI GCNNNNNNNGC 3 cut(s) 34, 420, 968
BstSFI CTRYAG 1 cut(s) 960
BstV1I GCAGC 1 cut(s) 459
BstV2I GAAGAC 1 cut(s) 380
BstZ17I GTATAC 1 cut(s) 518
BsuRI GGCC 3 cut(s) 414, 493, 1098
BtsCI GGATG 1 cut(s) 119
BtsIMutI CAGTG 1 cut(s) 72
Cac8I GCNNGC 1 cut(s) 960
CciI TCATGA 3 cut(s) 703, 723, 762
Cfr13I GGNCC 1 cut(s) 1096
Csp6I GTAC 2 cut(s) 248, 1151
CviAII CATG 5 cut(s) 201, 704, 724, 763, 895
CviQI GTAC 2 cut(s) 248, 1151
DdeI CTNAG 7 cut(s) 369, 418, 488, 532, 600, 617, 1163
DpnI GATC 1 cut(s) 782
DpnII GATC 1 cut(s) 780
Eam1104I CTCTTC 2 cut(s) 236, 1115
EarI CTCTTC 2 cut(s) 236, 1115
Eco130I CCWWGG 1 cut(s) 1019
Eco24I GRGCYC 1 cut(s) 442
Eco32I GATATC 1 cut(s) 505
Eco57I CTGAAG 1 cut(s) 867
Eco88I CYCGRG 1 cut(s) 435
EcoNI CCTNNNNNAGG 1 cut(s) 1049
EcoRI GAATTC 2 cut(s) 556, 1073
EcoRV GATATC 1 cut(s) 505
EcoT14I CCWWGG 1 cut(s) 1019
EcoT38I GRGCYC 1 cut(s) 442
ErhI CCWWGG 1 cut(s) 1019
FaeI CATG 5 cut(s) 204, 707, 727, 766, 898
FalI AAGNNNNNCTT 6 cut(s) 866, 898, 1097, 1129, 1100, 1132
FaqI GGGAC 1 cut(s) 667
FatI CATG 5 cut(s) 200, 703, 723, 762, 894
FblI GTMKAC 1 cut(s) 517
Fnu4HI GCNGC 1 cut(s) 448
FokI GGATG 1 cut(s) 106
FriOI GRGCYC 1 cut(s) 442
Fsp4HI GCNGC 1 cut(s) 448
FspBI CTAG 2 cut(s) 392, 1020
GluI GCNGC 1 cut(s) 448
HaeIII GGCC 3 cut(s) 414, 493, 1098
Hin1II CATG 5 cut(s) 204, 707, 727, 766, 898
HincII GTYRAC 2 cut(s) 573, 937
HindII GTYRAC 2 cut(s) 573, 937
HindIII AAGCTT 1 cut(s) 287
HinfI GANTC 6 cut(s) 62, 275, 306, 735, 794, 877
HphI GGTGA 1 cut(s) 204
Hpy166II GTNNAC 5 cut(s) 196, 250, 518, 573, 937
Hpy188I TCNGA 5 cut(s) 294, 529, 603, 618, 981
Hpy188III TCNNGA 6 cut(s) 704, 715, 724, 763, 1117, 1142
Hpy8I GTNNAC 5 cut(s) 196, 250, 518, 573, 937
HpyAV CCTTC 5 cut(s) 651, 753, 892, 1045, 1169
HpyCH4III ACNGT 3 cut(s) 181, 577, 985
HpyCH4IV ACGT 1 cut(s) 662
HpyCH4V TGCA 5 cut(s) 28, 447, 752, 962, 1135
HpyF10VI GCNNNNNNNGC 3 cut(s) 34, 420, 968
HpyF3I CTNAG 7 cut(s) 369, 418, 488, 532, 600, 617, 1163
HpySE526I ACGT 1 cut(s) 662
Hsp92II CATG 5 cut(s) 204, 707, 727, 766, 898
Kzo9I GATC 1 cut(s) 780
LpnPI CCDG 9 cut(s) 228, 285, 381, 405, 648, 900, 972, 1167, 1184
Lsp1109I GCAGC 1 cut(s) 459
LweI GCATC 2 cut(s) 104, 1176
MaeI CTAG 2 cut(s) 392, 1020
MaeII ACGT 1 cut(s) 662
MaeIII GTNAC 2 cut(s) 67, 210
MalI GATC 1 cut(s) 782
MboI GATC 1 cut(s) 780
MboII GAAGA 6 cut(s) 253, 385, 860, 916, 1120, 1132
MhlI GDGCHC 1 cut(s) 442
MluCI AATT 6 cut(s) 29, 341, 556, 1073, 1078, 1219
MmeI TCCRAC 2 cut(s) 821, 1004
MnlI CCTC 8 cut(s) 237, 263, 425, 529, 711, 1109, 1116, 1207
MroXI GAANNNNTTC 2 cut(s) 881, 1112
MseI TTAA 6 cut(s) 285, 336, 552, 627, 1058, 1222
MslI CAYNNNNRTG 2 cut(s) 802, 1091
MspA1I CMGCKG 1 cut(s) 568
MspCI CTTAAG 1 cut(s) 626
MwoI GCNNNNNNNGC 3 cut(s) 34, 420, 968
NdeII GATC 1 cut(s) 780
NlaIII CATG 5 cut(s) 204, 707, 727, 766, 898
NlaIV GGNNCC 1 cut(s) 633
NmuCI GTSAC 2 cut(s) 67, 210
PagI TCATGA 3 cut(s) 703, 723, 762
PcsI WCGNNNNNNNCGW 1 cut(s) 752
PdmI GAANNNNTTC 2 cut(s) 881, 1112
PfeI GAWTC 6 cut(s) 62, 275, 306, 735, 794, 877
PkrI GCNGC 1 cut(s) 449
Ppu21I YACGTR 1 cut(s) 663
PspN4I GGNNCC 1 cut(s) 633
PspPI GGNCC 1 cut(s) 1096
PstI CTGCAG 1 cut(s) 964
PvuII CAGCTG 1 cut(s) 568
RsaI GTAC 2 cut(s) 249, 1152
RsaNI GTAC 2 cut(s) 248, 1151
RseI CAYNNNNRTG 2 cut(s) 802, 1091
SaqAI TTAA 6 cut(s) 285, 336, 552, 627, 1058, 1222
SatI GCNGC 1 cut(s) 448
Sau3AI GATC 1 cut(s) 780
Sau96I GGNCC 1 cut(s) 1096
SduI GDGCHC 1 cut(s) 442
SfaNI GCATC 2 cut(s) 104, 1176
SfcI CTRYAG 1 cut(s) 960
SmiMI CAYNNNNRTG 2 cut(s) 802, 1091
SmlI CTYRAG 1 cut(s) 626
SmoI CTYRAG 1 cut(s) 626
Sse9I AATT 6 cut(s) 29, 341, 556, 1073, 1078, 1219
SsiI CCGC 2 cut(s) 88, 1193
SspI AATATT 1 cut(s) 910
SspMI CTAG 2 cut(s) 392, 1020
StyI CCWWGG 1 cut(s) 1019
TaaI ACNGT 3 cut(s) 181, 577, 985
TaiI ACGT 1 cut(s) 665
TasI AATT 6 cut(s) 29, 341, 556, 1073, 1078, 1219
TfiI GAWTC 6 cut(s) 62, 275, 306, 735, 794, 877
Tru1I TTAA 6 cut(s) 285, 336, 552, 627, 1058, 1222
Tru9I TTAA 6 cut(s) 285, 336, 552, 627, 1058, 1222
TscAI CASTG 1 cut(s) 72
TseFI GTSAC 2 cut(s) 67, 210
TseI GCWGC 1 cut(s) 447
Tsp45I GTSAC 2 cut(s) 67, 210
TspDTI ATGAA 9 cut(s) 102, 108, 174, 692, 720, 751, 779, 786, 905
TspRI CASTG 1 cut(s) 72
Vha464I CTTAAG 1 cut(s) 626
XagI CCTNNNNNAGG 1 cut(s) 1049
XapI RAATTY 3 cut(s) 341, 556, 1073
XcmI CCANNNNNNNNNTGG 1 cut(s) 164
XmaJI CCTAGG 1 cut(s) 1019
XmiI GTMKAC 1 cut(s) 517
XmnI GAANNNNTTC 2 cut(s) 881, 1112
XspI CTAG 2 cut(s) 392, 1020
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.