Rh2BG444800
ERF Family

mTERF

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0000263
Physical Location & Seq
Reverse (-)
62907521 .. 62913996
6476 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG444800.1

Sequence Viewer

Length: 1197 bp
ATGTTTGGGTTTTGTTGTAAGAGATTGCAATTATTAGTTCCAAGCTGTAGCACCATTTCTGTTGATTCTTCAGTGACCCATTTTCTAAAGGCATCTCCTTTTAGCAGATCATATTCATCTAAACCCCAAGATCGCTCTTTTACAGTTTCATATCTTATAAACTCATGTGGGTTGTCCCCGGAACTTGCTCTCTCTTTGTCCAAGAAGCGAGGGGTGCACTTCAAATCCCCAGAAAAACCAGACTCGGTCATTAAGCTTCTGAAACACTATGGATTCAGTGATACCCATGTCTCCCAAATTGTTAAGAAACTCCCAACCCTTCTCTTAGTCAATGCTAAAAAGACCCTTGTCCCCAAACTTGAGTTTCTTGGTTCCATTGGAATTACAGGCACTGACCTTACTCGGCTCGTTTGCGGCAGCCCAAATGTTTTGTCCTATAGCCTCGACAATAATCTCAGGCCTTGTTACGATGTCATCAGAACTCTACCTATCGGTGACGAAAAGGTTGGTCTCTTCATGAGGAATTCGTGTCGGATACTGAATGTCAAAGCACTAAGCAATGCTGCTAGCAATGTGTCATTTCTGAGATCACTTCAAGTGCCAGAATCATCAATCACTTTGTGTGCCCTCTATTATCTTATTGCAGTATCCCGCGACACTGCCAAGTTTAGGGATTATGTAGGGAAGGTCATCAGTATGGGATTTATCCCTTCATCCACAACCTTTGTGAGAGCCGTGTATGTGATTTCTATGATGAATGGATCAAAATGGGCACAAAGGGTGGGATTTTACAGGAAGTGGGGTTGGGCTGAAGATGATGTACTGTCTGCATTTAGAAAGAGTCCCACGTTTATGTTCTTGAGTGAGGAGAATGTCTCCATTAAATTGGATTTTTATTTGAACAAAATGGGTTGGCAGCCAGCCAATGTAGCTCAACATCCCGCTGTTCTAACTTATAGTTTGGAGAAGTGGATCACACCTCGGTGTTCGGTTATTAGAATTCTGCTGTTGAAGGGCTTAATAAGGGAGGGAGAATATTCTATTGCTTACATGATGTTCAGAAGAGACCAGTTCTTGGATAGGTTTGTGAACAAGTATCAAGAGCAAGTACCCGAATTATTGAGCGTCTATCAAGGGAAAATTGGTCTAGCAGAACTCAGCTTAGGATTTGAGGAAAAAGGAGTGAAAGAAGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
mTERF

Protein Analysis

398

Amino Acids

44.86

Weight (kDa)

9.51

Isoelectric Point (pI)

40.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
mTERF PF02536 84 - 291 5.1e-22 mTERF
mTERF PF02536 254 - 354 4.1e-15 mTERF
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000263)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G21150 AT1G21150 AT1G21150
fragaria_vesca FvH4_4g17900 FvH4_6g26110 FvH4_6g33880 FvH4_6g33900 FvH4_6g34011 FvH4_6g34011 FvH4_6g34011 FvH4_6g34011 FvH4_6g34030 FvH4_6g34040 FvH4_6g34070 FvH4_6g34070 FvH4_7g12830
malus_domestica MD09G1189800.v1.1 MD09G1189900.v1.1 MD09G1190000.v1.1 MD14G1088800.v1.1 MD14G1088900.v1.1 MD17G1172900.v1.1
pyrus_communis pycom07g03460 pycom09g10650 pycom14g07860
rosa_chinensis RchiOBHm_Chr1g0351891 RchiOBHm_Chr1g0351901 RchiOBHm_Chr2g0143771 RchiOBHm_Chr2g0143861 RchiOBHm_Chr2g0143881 RchiOBHm_Chr2g0143941 RchiOBHm_Chr2g0143951 RchiOBHm_Chr2g0144081 RchiOBHm_Chr2g0144091 RchiOBHm_Chr2g0144211 RchiOBHm_Chr2g0144231 RchiOBHm_Chr2g0144241 RchiOBHm_Chr2g0144291 RchiOBHm_Chr2g0144301 RchiOBHm_Chr2g0144311 RchiOBHm_Chr2g0144331 RchiOBHm_Chr2g0144341 RchiOBHm_Chr4g0422021 RchiOBHm_Chr4g0422031
rosa_laevigata RLG00000007639 RLG00000020063 RLG00000020071 RLG00000020072 RLG00000020074
rosa_multiflora Rmu_co8214640.1_g000001 Rmu_co8471033.1_g000001 Rmu_sc0000789.1_g000002 Rmu_sc0001321.1_g000001 Rmu_sc0004340.1_g000001 Rmu_sc0004897.1_g000001 Rmu_sc0007105.1_g000005 Rmu_sc0009498.1_g000001 Rmu_sc0009498.1_g000002 Rmu_sc0019136.1_g000001 Rmu_sc0020327.1_g000002 Rmu_sc0020327.1_g000003 Rmu_sc0022905.1_g000001 Rmu_sc0032602.1_g000003 Rmu_sc0032602.1_g000004
rosa_roxburghii Rroxscaffold_2G00101380 Rroxscaffold_2G00101390 Rroxscaffold_2G00101400 Rroxscaffold_2G00101410 Rroxscaffold_2G00101480 Rroxscaffold_2G00101490 Rroxscaffold_4G00303470 Rroxscaffold_5G00364130 Rroxscaffold_5G00364150
rosa_rugosa Rorug01G0222600 Rorug02G0384700 Rorug02G0384800 Rorug02G0385800 Rorug02G0385900 Rorug02G0386000 Rorug02G0386000 Rorug02G0386100 Rorug04G0176700 Rorug04G0176800.1
rosa_samantha Rh1AG236500 Rh1AG236600 Rh1BG206900 Rh1CG221000 Rh1CG221100 Rh2BG444800 Rh2BG444900 Rh2BG446600 Rh2BG446700 Rh2BG447600 Rh2BG448100 Rh2BG448400 Rh2BG448500 Rh2BG448700 Rh2BG448800 Rh2CG423500 Rh2CG423600 Rh2CG424800 Rh2CG424900 Rh2CG425100 Rh2CG425200 Rh2DG455200 Rh2DG455300 Rh2DG456900 Rh2DG457000 Rh2DG457100 Rh2DG457600 Rh2DG457900 Rh2DG458000 Rh2DG458300 Rh2DG458400 Rh4AG236100 Rh4AG236200 Rh4BG239200 Rh4CG250900 Rh4CG251100
rosa_wichuraiana Rw0G000400 Rw0G015990 Rw0G017200 Rw1G020580 Rw2G033310 Rw2G035630 Rw2G035640 Rw2G035790 Rw2G035800 Rw2G035840 Rw2G036160 Rw4G019830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 158
AccB7I CCANNNNNTGG 1 cut(s) 1075
AccII CGCG 1 cut(s) 654
AciI CCGC 3 cut(s) 414, 652, 942
AclWI GGATC 2 cut(s) 769, 980
AcsI RAATTY 2 cut(s) 523, 999
AcuI CTGAAG 2 cut(s) 54, 831
AdeI CACNNNGTG 1 cut(s) 621
AfaI GTAC 2 cut(s) 822, 1110
AfiI CCNNNNNNNGG 2 cut(s) 669, 1075
AgsI TTSAA 4 cut(s) 223, 596, 901, 1012
AleI CACNNNNGTG 1 cut(s) 982
AluBI AGCT 4 cut(s) 45, 256, 932, 1161
AluI AGCT 4 cut(s) 45, 256, 932, 1161
Alw21I GWGCWC 1 cut(s) 219
Alw26I GTCTC 4 cut(s) 295, 515, 880, 1059
Alw44I GTGCAC 1 cut(s) 215
AlwI GGATC 2 cut(s) 769, 980
AlwNI CAGNNNCTG 1 cut(s) 392
AoxI GGCC 1 cut(s) 458
ApaLI GTGCAC 1 cut(s) 215
ApeKI GCWGC 3 cut(s) 417, 563, 916
ApoI RAATTY 2 cut(s) 523, 999
ArsI GACNNNNNNTTYG 2 cut(s) 416, 448
AsuC2I CCSGG 1 cut(s) 179
AsuHPI GGTGA 1 cut(s) 506
AsuNHI GCTAGC 1 cut(s) 566
BaeGI GKGCMC 3 cut(s) 219, 628, 775
BaeI ACNNNNGTAYC 2 cut(s) 273, 306
BarI GAAGNNNNNNTAC 2 cut(s) 804, 836
Bbv12I GWGCWC 1 cut(s) 219
BbvI GCAGC 3 cut(s) 429, 550, 928
BceAI ACGGC 1 cut(s) 719
BciVI GTATCC 2 cut(s) 528, 658
BcnI CCSGG 1 cut(s) 179
BcoDI GTCTC 4 cut(s) 295, 515, 880, 1059
BfaI CTAG 2 cut(s) 567, 1148
BfmI CTRYAG 2 cut(s) 46, 436
BfuI GTATCC 2 cut(s) 528, 658
BisI GCNGC 4 cut(s) 415, 418, 564, 917
BlsI GCNGC 4 cut(s) 416, 419, 565, 918
Bme1390I CCNGG 1 cut(s) 179
BmiI GGNNCC 1 cut(s) 373
BmrFI CCNGG 1 cut(s) 179
BmsI GCATC 1 cut(s) 101
BmtI GCTAGC 1 cut(s) 570
BoxI GACNNNNGTC 1 cut(s) 347
BplI GAGNNNNNCTC 2 cut(s) 860, 892
Bpu10I CCTNAGC 1 cut(s) 1162
BpuEI CTTGAG 2 cut(s) 380, 880
BpuMI CCSGG 1 cut(s) 179
BsaI GGTCTC 2 cut(s) 515, 1059
BsaJI CCNNGG 2 cut(s) 177, 980
Bsc4I CCNNNNNNNGG 2 cut(s) 669, 1075
Bse1I ACTGG 1 cut(s) 1069
Bse3DI GCAATG 2 cut(s) 565, 577
BseDI CCNNGG 2 cut(s) 177, 980
BseGI GGATG 2 cut(s) 713, 937
BseLI CCNNNNNNNGG 2 cut(s) 669, 1075
BseMI GCAATG 2 cut(s) 565, 577
BseMII CTCAG 3 cut(s) 469, 575, 1171
BseNI ACTGG 1 cut(s) 1069
BseRI GAGGAG 1 cut(s) 881
BseSI GKGCMC 3 cut(s) 219, 628, 775
BseXI GCAGC 3 cut(s) 429, 550, 928
Bsh1236I CGCG 1 cut(s) 654
BshFI GGCC 1 cut(s) 460
BsiHKAI GWGCWC 1 cut(s) 219
BsiSI CCGG 1 cut(s) 179
BslFI GGGAC 3 cut(s) 160, 335, 828
BslI CCNNNNNNNGG 2 cut(s) 669, 1075
BsmAI GTCTC 4 cut(s) 295, 515, 880, 1059
BsmFI GGGAC 3 cut(s) 160, 335, 828
BsnI GGCC 1 cut(s) 460
Bso31I GGTCTC 2 cut(s) 515, 1059
Bsp1286I GDGCHC 3 cut(s) 219, 628, 775
Bsp143I GATC 5 cut(s) 107, 130, 587, 761, 972
BspACI CCGC 3 cut(s) 414, 652, 942
BspANI GGCC 1 cut(s) 460
BspCNI CTCAG 3 cut(s) 468, 576, 1170
BspFNI CGCG 1 cut(s) 654
BspHI TCATGA 1 cut(s) 516
BspLI GGNNCC 1 cut(s) 373
BspOI GCTAGC 1 cut(s) 570
BspPI GGATC 2 cut(s) 769, 980
BspTNI GGTCTC 2 cut(s) 515, 1059
BsrDI GCAATG 2 cut(s) 565, 577
BsrI ACTGG 1 cut(s) 1069
BssECI CCNNGG 2 cut(s) 177, 980
BssMI GATC 5 cut(s) 107, 130, 587, 761, 972
Bst4CI ACNGT 2 cut(s) 145, 825
Bst6I CTCTTC 2 cut(s) 518, 1057
BstC8I GCNNGC 2 cut(s) 568, 921
BstDEI CTNAG 6 cut(s) 325, 455, 554, 584, 1157, 1162
BstF5I GGATG 2 cut(s) 713, 937
BstFNI CGCG 1 cut(s) 654
BstKTI GATC 5 cut(s) 110, 133, 590, 764, 975
BstMAI GTCTC 4 cut(s) 295, 515, 880, 1059
BstMBI GATC 5 cut(s) 107, 130, 587, 761, 972
BstMWI GCNNNNNNNGC 2 cut(s) 214, 929
BstPAI GACNNNNGTC 1 cut(s) 347
BstSCI CCNGG 1 cut(s) 177
BstSFI CTRYAG 2 cut(s) 46, 436
BstSLI GKGCMC 3 cut(s) 219, 628, 775
BstUI CGCG 1 cut(s) 654
BstV1I GCAGC 3 cut(s) 429, 550, 928
BstXI CCANNNNNNTGG 1 cut(s) 886
BsuI GTATCC 2 cut(s) 528, 658
BsuRI GGCC 1 cut(s) 460
BtsCI GGATG 2 cut(s) 713, 937
BtsI GCAGTG 1 cut(s) 657
BtsIMutI CAGTG 4 cut(s) 78, 283, 390, 657
Cac8I GCNNGC 2 cut(s) 568, 921
CaiI CAGNNNCTG 1 cut(s) 392
CciI TCATGA 1 cut(s) 516
CseI GACGC 1 cut(s) 1114
Csp6I GTAC 2 cut(s) 821, 1109
CspCI CAANNNNNGTGG 2 cut(s) 706, 741
CviAII CATG 4 cut(s) 165, 287, 517, 1051
CviQI GTAC 2 cut(s) 821, 1109
DdeI CTNAG 6 cut(s) 325, 455, 554, 584, 1157, 1162
DpnI GATC 5 cut(s) 109, 132, 589, 763, 974
DpnII GATC 5 cut(s) 107, 130, 587, 761, 972
DraIII CACNNNGTG 1 cut(s) 621
Eam1104I CTCTTC 2 cut(s) 518, 1057
EarI CTCTTC 2 cut(s) 518, 1057
Eco147I AGGCCT 1 cut(s) 460
Eco31I GGTCTC 2 cut(s) 515, 1059
Eco57I CTGAAG 2 cut(s) 54, 831
EcoRI GAATTC 2 cut(s) 523, 999
FaeI CATG 4 cut(s) 168, 290, 520, 1054
FaqI GGGAC 3 cut(s) 160, 335, 828
FatI CATG 4 cut(s) 164, 286, 516, 1050
FauI CCCGC 2 cut(s) 659, 949
Fnu4HI GCNGC 4 cut(s) 415, 418, 564, 917
FokI GGATG 2 cut(s) 700, 924
Fsp4HI GCNGC 4 cut(s) 415, 418, 564, 917
FspBI CTAG 2 cut(s) 567, 1148
GluI GCNGC 4 cut(s) 415, 418, 564, 917
HaeIII GGCC 1 cut(s) 460
HapII CCGG 1 cut(s) 179
HgaI GACGC 1 cut(s) 1114
Hin1II CATG 4 cut(s) 168, 290, 520, 1054
HindIII AAGCTT 1 cut(s) 254
HinfI GANTC 5 cut(s) 65, 242, 273, 605, 841
HpaII CCGG 1 cut(s) 179
HphI GGTGA 1 cut(s) 506
Hpy166II GTNNAC 2 cut(s) 217, 1090
Hpy188I TCNGA 5 cut(s) 261, 479, 534, 585, 1061
Hpy188III TCNNGA 3 cut(s) 517, 859, 1100
Hpy8I GTNNAC 2 cut(s) 217, 1090
HpyAV CCTTC 4 cut(s) 329, 679, 720, 1006
HpyCH4III ACNGT 2 cut(s) 145, 825
HpyCH4IV ACGT 1 cut(s) 848
HpyCH4V TGCA 4 cut(s) 28, 217, 644, 830
HpyF10VI GCNNNNNNNGC 2 cut(s) 214, 929
HpyF3I CTNAG 6 cut(s) 325, 455, 554, 584, 1157, 1162
HpySE526I ACGT 1 cut(s) 848
Hsp92II CATG 4 cut(s) 168, 290, 520, 1054
Kzo9I GATC 5 cut(s) 107, 130, 587, 761, 972
LpnPI CCDG 9 cut(s) 192, 243, 252, 372, 442, 615, 778, 933, 1082
Lsp1109I GCAGC 3 cut(s) 429, 550, 928
LweI GCATC 1 cut(s) 101
MaeI CTAG 2 cut(s) 567, 1148
MaeII ACGT 1 cut(s) 848
MaeIII GTNAC 3 cut(s) 73, 464, 494
MalI GATC 5 cut(s) 109, 132, 589, 763, 974
MboI GATC 5 cut(s) 107, 130, 587, 761, 972
MboII GAAGA 4 cut(s) 60, 505, 824, 1074
MhlI GDGCHC 3 cut(s) 219, 628, 775
MluCI AATT 8 cut(s) 29, 297, 381, 523, 884, 999, 1115, 1140
MlyI GAGTC 2 cut(s) 236, 850
MmeI TCCRAC 1 cut(s) 512
MnlI CCTC 8 cut(s) 203, 452, 513, 638, 859, 990, 1021, 1165
MseI TTAA 4 cut(s) 252, 303, 882, 1019
MslI CAYNNNNRTG 3 cut(s) 695, 851, 982
MspA1I CMGCKG 1 cut(s) 944
MspI CCGG 1 cut(s) 179
MspR9I CCNGG 1 cut(s) 179
MvnI CGCG 1 cut(s) 654
MwoI GCNNNNNNNGC 2 cut(s) 214, 929
NciI CCSGG 1 cut(s) 179
NdeII GATC 5 cut(s) 107, 130, 587, 761, 972
NheI GCTAGC 1 cut(s) 566
NlaIII CATG 4 cut(s) 168, 290, 520, 1054
NlaIV GGNNCC 1 cut(s) 373
NmeAIII GCCGAG 1 cut(s) 382
NmuCI GTSAC 2 cut(s) 73, 494
OliI CACNNNNGTG 1 cut(s) 982
PagI TCATGA 1 cut(s) 516
PceI AGGCCT 1 cut(s) 460
PfeI GAWTC 3 cut(s) 65, 273, 605
PflFI GACNNNGTC 1 cut(s) 245
PflMI CCANNNNNTGG 1 cut(s) 1075
PkrI GCNGC 4 cut(s) 416, 419, 565, 918
PleI GAGTC 2 cut(s) 236, 849
PpsI GAGTC 2 cut(s) 236, 849
PshAI GACNNNNGTC 1 cut(s) 347
PsiI TTATAA 1 cut(s) 158
PspN4I GGNNCC 1 cut(s) 373
PstNI CAGNNNCTG 1 cut(s) 392
PsyI GACNNNGTC 1 cut(s) 245
RsaI GTAC 2 cut(s) 822, 1110
RsaNI GTAC 2 cut(s) 821, 1109
RseI CAYNNNNRTG 3 cut(s) 695, 851, 982
SaqAI TTAA 4 cut(s) 252, 303, 882, 1019
SatI GCNGC 4 cut(s) 415, 418, 564, 917
Sau3AI GATC 5 cut(s) 107, 130, 587, 761, 972
SchI GAGTC 2 cut(s) 236, 850
ScrFI CCNGG 1 cut(s) 179
SduI GDGCHC 3 cut(s) 219, 628, 775
SfaNI GCATC 1 cut(s) 101
SfcI CTRYAG 2 cut(s) 46, 436
SmiMI CAYNNNNRTG 3 cut(s) 695, 851, 982
SmlI CTYRAG 2 cut(s) 359, 859
SmoI CTYRAG 2 cut(s) 359, 859
Sse9I AATT 8 cut(s) 29, 297, 381, 523, 884, 999, 1115, 1140
SseBI AGGCCT 1 cut(s) 460
SsiI CCGC 3 cut(s) 414, 652, 942
SspI AATATT 1 cut(s) 1037
SspMI CTAG 2 cut(s) 567, 1148
StuI AGGCCT 1 cut(s) 460
StyD4I CCNGG 1 cut(s) 177
TaaI ACNGT 2 cut(s) 145, 825
TaiI ACGT 1 cut(s) 851
TaqI TCGA 1 cut(s) 444
TaqII GACCGA 1 cut(s) 235
TasI AATT 8 cut(s) 29, 297, 381, 523, 884, 999, 1115, 1140
TatI WGTACW 1 cut(s) 820
TauI GCSGC 1 cut(s) 417
TfiI GAWTC 3 cut(s) 65, 273, 605
Tru1I TTAA 4 cut(s) 252, 303, 882, 1019
Tru9I TTAA 4 cut(s) 252, 303, 882, 1019
TscAI CASTG 4 cut(s) 78, 283, 397, 664
TseFI GTSAC 2 cut(s) 73, 494
TseI GCWGC 3 cut(s) 417, 563, 916
Tsp45I GTSAC 2 cut(s) 73, 494
TspDTI ATGAA 5 cut(s) 105, 138, 505, 702, 770
TspRI CASTG 4 cut(s) 78, 283, 397, 664
Tth111I GACNNNGTC 1 cut(s) 245
Van91I CCANNNNNTGG 1 cut(s) 1075
VneI GTGCAC 1 cut(s) 215
XapI RAATTY 2 cut(s) 523, 999
XspI CTAG 2 cut(s) 567, 1148
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.