Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0000263

Physical Location & Seq

Genomic Coordinates Reverse (-)

11118357 .. 11119072

Gene Structure 716 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1088800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGGGATTCAAGCCTAAGACGTTAGCATTTGTTAATGGACTCCACGTGATTGCAACAATCACCAAATCGACATGGGTGCACAAATTGGAGGTTTACAAGAGCTGTGGCTGGATCGAAGAGGAGATCATGTTGGCTTTTAGAAAGAAACCCACTTGTATGTATCTGTCAGAGAAGAATATAAGAAGTAAAATGGATTTTCTTGTAAACAAGAAGGGTTGGCAGCTTGCATATCTCGCCAGATATCCCGACTTTCTGTCGCTTAGTCTGGAGCGGAGGGTCATTCCAAGGTGTTCTATCATTAGAGTCTTGTTGGTGAAGGGCTTGCTGAAGAAAAAGTATTCCATATCATCATTGTTGATTACCGTTGATAGTCGCTTTATAAGTAAGTTTGTGACTCGCTATCAAGAAAGCGTGCCTCAACTTTTGGATATCTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

mTERF

Protein Analysis

146

Amino Acids

16.95

Weight (kDa)

9.94

Isoelectric Point (pI)

40.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
mTERF	PF02536	21 - 126	8.4e-18	mTERF

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000263)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21150 AT1G21150 AT1G21150
fragaria_vesca	FvH4_4g17900 FvH4_6g26110 FvH4_6g33880 FvH4_6g33900 FvH4_6g34011 FvH4_6g34011 FvH4_6g34011 FvH4_6g34011 FvH4_6g34030 FvH4_6g34040 FvH4_6g34070 FvH4_6g34070 FvH4_7g12830
malus_domestica	MD09G1189800.v1.1 MD09G1189900.v1.1 MD09G1190000.v1.1 MD14G1088800.v1.1 MD14G1088900.v1.1 MD17G1172900.v1.1
pyrus_communis	pycom07g03460 pycom09g10650 pycom14g07860
rosa_chinensis	RchiOBHm_Chr1g0351891 RchiOBHm_Chr1g0351901 RchiOBHm_Chr2g0143771 RchiOBHm_Chr2g0143861 RchiOBHm_Chr2g0143881 RchiOBHm_Chr2g0143941 RchiOBHm_Chr2g0143951 RchiOBHm_Chr2g0144081 RchiOBHm_Chr2g0144091 RchiOBHm_Chr2g0144211 RchiOBHm_Chr2g0144231 RchiOBHm_Chr2g0144241 RchiOBHm_Chr2g0144291 RchiOBHm_Chr2g0144301 RchiOBHm_Chr2g0144311 RchiOBHm_Chr2g0144331 RchiOBHm_Chr2g0144341 RchiOBHm_Chr4g0422021 RchiOBHm_Chr4g0422031
rosa_laevigata	RLG00000007639 RLG00000020063 RLG00000020071 RLG00000020072 RLG00000020074
rosa_multiflora	Rmu_co8214640.1_g000001 Rmu_co8471033.1_g000001 Rmu_sc0000789.1_g000002 Rmu_sc0001321.1_g000001 Rmu_sc0004340.1_g000001 Rmu_sc0004897.1_g000001 Rmu_sc0007105.1_g000005 Rmu_sc0009498.1_g000001 Rmu_sc0009498.1_g000002 Rmu_sc0019136.1_g000001 Rmu_sc0020327.1_g000002 Rmu_sc0020327.1_g000003 Rmu_sc0022905.1_g000001 Rmu_sc0032602.1_g000003 Rmu_sc0032602.1_g000004
rosa_roxburghii	Rroxscaffold_2G00101380 Rroxscaffold_2G00101390 Rroxscaffold_2G00101400 Rroxscaffold_2G00101410 Rroxscaffold_2G00101480 Rroxscaffold_2G00101490 Rroxscaffold_4G00303470 Rroxscaffold_5G00364130 Rroxscaffold_5G00364150
rosa_rugosa	Rorug01G0222600 Rorug02G0384700 Rorug02G0384800 Rorug02G0385800 Rorug02G0385900 Rorug02G0386000 Rorug02G0386000 Rorug02G0386100 Rorug04G0176700 Rorug04G0176800.1
rosa_samantha	Rh1AG236500 Rh1AG236600 Rh1BG206900 Rh1CG221000 Rh1CG221100 Rh2BG444800 Rh2BG444900 Rh2BG446600 Rh2BG446700 Rh2BG447600 Rh2BG448100 Rh2BG448400 Rh2BG448500 Rh2BG448700 Rh2BG448800 Rh2CG423500 Rh2CG423600 Rh2CG424800 Rh2CG424900 Rh2CG425100 Rh2CG425200 Rh2DG455200 Rh2DG455300 Rh2DG456900 Rh2DG457000 Rh2DG457100 Rh2DG457600 Rh2DG457900 Rh2DG458000 Rh2DG458300 Rh2DG458400 Rh4AG236100 Rh4AG236200 Rh4BG239200 Rh4CG250900 Rh4CG251100
rosa_wichuraiana	Rw0G000400 Rw0G015990 Rw0G017200 Rw1G020580 Rw2G033310 Rw2G035630 Rw2G035640 Rw2G035790 Rw2G035800 Rw2G035840 Rw2G036160 Rw4G019830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	380
AccBSI	CCGCTC	1 cut(s)	271
AciI	CCGC	1 cut(s)	271
AclWI	GGATC	1 cut(s)	119
AcuI	CTGAAG	1 cut(s)	347
AcvI	CACGTG	1 cut(s)	46
AgsI	TTSAA	1 cut(s)	10
AhdI	GACNNNNNGTC	1 cut(s)	253
AluBI	AGCT	2 cut(s)	102, 223
AluI	AGCT	2 cut(s)	102, 223
Alw21I	GWGCWC	1 cut(s)	81
Alw44I	GTGCAC	1 cut(s)	77
AlwI	GGATC	1 cut(s)	119
ApaLI	GTGCAC	1 cut(s)	77
ApeKI	GCWGC	1 cut(s)	220
AsuHPI	GGTGA	2 cut(s)	52, 325
BaeGI	GKGCMC	1 cut(s)	81
BbrPI	CACGTG	1 cut(s)	46
Bbv12I	GWGCWC	1 cut(s)	81
BbvI	GCAGC	1 cut(s)	232
BcgI	CGANNNNNNTGC	2 cut(s)	58, 92
BisI	GCNGC	1 cut(s)	221
BlsI	GCNGC	1 cut(s)	222
BmeRI	GACNNNNNGTC	1 cut(s)	253
BpmI	CTGGAG	1 cut(s)	287
BsaAI	YACGTR	1 cut(s)	46
BsaJI	CCNNGG	1 cut(s)	284
BsaXI	ACNNNNNCTCC	2 cut(s)	113, 143
BseDI	CCNNGG	1 cut(s)	284
BseRI	GAGGAG	1 cut(s)	134
BseSI	GKGCMC	1 cut(s)	81
BseXI	GCAGC	1 cut(s)	232
BsiHKAI	GWGCWC	1 cut(s)	81
Bsp1286I	GDGCHC	1 cut(s)	81
Bsp143I	GATC	2 cut(s)	111, 123
BspACI	CCGC	1 cut(s)	271
BspPI	GGATC	1 cut(s)	119
BsrBI	CCGCTC	1 cut(s)	271
BssECI	CCNNGG	1 cut(s)	284
BssMI	GATC	2 cut(s)	111, 123
BssT1I	CCWWGG	1 cut(s)	284
Bst4CI	ACNGT	1 cut(s)	364
Bst6I	CTCTTC	1 cut(s)	111
BstBAI	YACGTR	1 cut(s)	46
BstC8I	GCNNGC	3 cut(s)	225, 323, 413
BstDEI	CTNAG	2 cut(s)	15, 260
BstKTI	GATC	2 cut(s)	114, 126
BstMBI	GATC	2 cut(s)	111, 123
BstMWI	GCNNNNNNNGC	1 cut(s)	233
BstSLI	GKGCMC	1 cut(s)	81
BstV1I	GCAGC	1 cut(s)	232
Cac8I	GCNNGC	3 cut(s)	225, 323, 413
CspCI	CAANNNNNGTGG	2 cut(s)	85, 120
CviAII	CATG	2 cut(s)	72, 127
CviJI	RGCY	6 cut(s)	13, 102, 108, 134, 223, 321
CviKI_1	RGCY	6 cut(s)	13, 102, 108, 134, 223, 321
DdeI	CTNAG	2 cut(s)	15, 260
DpnI	GATC	2 cut(s)	113, 125
DpnII	GATC	2 cut(s)	111, 123
DriI	GACNNNNNGTC	1 cut(s)	253
Eam1104I	CTCTTC	1 cut(s)	111
Eam1105I	GACNNNNNGTC	1 cut(s)	253
EarI	CTCTTC	1 cut(s)	111
Eco130I	CCWWGG	1 cut(s)	284
Eco32I	GATATC	2 cut(s)	242, 430
Eco57I	CTGAAG	1 cut(s)	347
Eco72I	CACGTG	1 cut(s)	46
EcoRV	GATATC	2 cut(s)	242, 430
EcoT14I	CCWWGG	1 cut(s)	284
ErhI	CCWWGG	1 cut(s)	284
FaeI	CATG	2 cut(s)	75, 130
FaiI	YATR	7 cut(s)	73, 128, 158, 179, 229, 344, 380
FatI	CATG	2 cut(s)	71, 126
Fnu4HI	GCNGC	1 cut(s)	221
Fsp4HI	GCNGC	1 cut(s)	221
GluI	GCNGC	1 cut(s)	221
GsuI	CTGGAG	1 cut(s)	287
Hin1II	CATG	2 cut(s)	75, 130
HinfI	GANTC	4 cut(s)	6, 39, 303, 394
HphI	GGTGA	2 cut(s)	52, 325
Hpy166II	GTNNAC	3 cut(s)	79, 94, 205
Hpy188I	TCNGA	1 cut(s)	169
Hpy188III	TCNNGA	3 cut(s)	245, 266, 404
Hpy8I	GTNNAC	3 cut(s)	79, 94, 205
HpyAV	CCTTC	2 cut(s)	205, 310
HpyCH4III	ACNGT	1 cut(s)	364
HpyCH4IV	ACGT	2 cut(s)	20, 45
HpyCH4V	TGCA	3 cut(s)	53, 79, 227
HpyF10VI	GCNNNNNNNGC	1 cut(s)	233
HpyF3I	CTNAG	2 cut(s)	15, 260
HpySE526I	ACGT	2 cut(s)	20, 45
Hsp92II	CATG	2 cut(s)	75, 130
Kzo9I	GATC	2 cut(s)	111, 123
LmnI	GCTCC	1 cut(s)	268
LpnPI	CCDG	3 cut(s)	94, 250, 251
Lsp1109I	GCAGC	1 cut(s)	232
MaeII	ACGT	2 cut(s)	20, 45
MaeIII	GTNAC	1 cut(s)	391
MalI	GATC	2 cut(s)	113, 125
MbiI	CCGCTC	1 cut(s)	271
MboI	GATC	2 cut(s)	111, 123
MboII	GAAGA	3 cut(s)	128, 184, 340
MhlI	GDGCHC	1 cut(s)	81
MluCI	AATT	1 cut(s)	83
MlyI	GAGTC	3 cut(s)	33, 312, 388
MnlI	CCTC	4 cut(s)	82, 112, 267, 426
MseI	TTAA	1 cut(s)	33
MslI	CAYNNNNRTG	1 cut(s)	155
MwoI	GCNNNNNNNGC	1 cut(s)	233
NdeII	GATC	2 cut(s)	111, 123
NlaIII	CATG	2 cut(s)	75, 130
NmuCI	GTSAC	1 cut(s)	391
PfeI	GAWTC	1 cut(s)	6
PkrI	GCNGC	1 cut(s)	222
PleI	GAGTC	3 cut(s)	33, 311, 388
PmaCI	CACGTG	1 cut(s)	46
PmlI	CACGTG	1 cut(s)	46
PpsI	GAGTC	3 cut(s)	33, 311, 388
Ppu21I	YACGTR	1 cut(s)	46
PsiI	TTATAA	1 cut(s)	380
PspCI	CACGTG	1 cut(s)	46
RseI	CAYNNNNRTG	1 cut(s)	155
SaqAI	TTAA	1 cut(s)	33
SatI	GCNGC	1 cut(s)	221
Sau3AI	GATC	2 cut(s)	111, 123
SchI	GAGTC	3 cut(s)	33, 312, 388
SduI	GDGCHC	1 cut(s)	81
SetI	ASST	6 cut(s)	23, 48, 93, 104, 225, 290
SmiMI	CAYNNNNRTG	1 cut(s)	155
Sse9I	AATT	1 cut(s)	83
SsiI	CCGC	1 cut(s)	271
StyI	CCWWGG	1 cut(s)	284
TaaI	ACNGT	1 cut(s)	364
TaiI	ACGT	2 cut(s)	23, 48
TaqI	TCGA	2 cut(s)	68, 114
TasI	AATT	1 cut(s)	83
TfiI	GAWTC	1 cut(s)	6
Tru1I	TTAA	1 cut(s)	33
Tru9I	TTAA	1 cut(s)	33
TseFI	GTSAC	1 cut(s)	391
TseI	GCWGC	1 cut(s)	220
Tsp45I	GTSAC	1 cut(s)	391
VneI	GTGCAC	1 cut(s)	77

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.