RLG00000020072
ERF Family

mTERF

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000263
Physical Location & Seq
Forward (+)
60760812 .. 60761513
702 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000020072

Sequence Viewer

Length: 702 bp
ATGGTGGCTGTTTTCTTGAAGAACTCGAACCGGGCATTTGGGGTCAAATTGCTTAGCAATCTTGTTCCCAATGTTTCAGTTCTTAGGGCAATTCAAGTGCCGGAACACTGCGTCTCCTTTTACGTTACCTATCATCCTCTTGTGCTGTCCCCTGAAACTAGCAAGTTTAAGGAAAGTGTAAACAAGATCATTAATCTCGGAATTCTGCCTTCGAGTTTTACTTTCATGAAGGCACTACAAGTCATCTCTCAGATGGATGCATCAAAGTGGAGACGAAAGACAGAGTTCTATAGGAAGTGTGGTTGGACTGAGGATGACTTTCTGTTGGCATTTAGAAAGAATCCCATGTTTATGAGCTTGTCAGAGGAGAAGTGTTCAAGTAAAATTGAGTTTCTTGTGAACAAAATGGGTTGGCAGCCTGCAGAAGTGGCTGACAGGCCGGATATTCTAACTCATAGTTTGGAGAAGTCTATCATACCTAGGTGTTCAGTTATTAGAGTTCTCCAATATAAGGGTTTGATGAAAAAGGGAGAACTTTCTCAAGCTACCATGCTGATAAACAGTAGGAAGCGCTTCTTGGATAGGTTTGTGATCAGATATCAGGATCAAGCACCTGAACTGTTGAGTATCTTTCAAGGGCAAATGTCTCTAGCAGAATTGGGTGTAGGATTTGAGGAAAGGGATGGAGTGAAACAATTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
mTERF

Protein Analysis

234

Amino Acids

26.76

Weight (kDa)

9.51

Isoelectric Point (pI)

46.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
mTERF PF02536 13 - 193 6.5e-22 mTERF
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000263)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G21150 AT1G21150 AT1G21150
fragaria_vesca FvH4_4g17900 FvH4_6g26110 FvH4_6g33880 FvH4_6g33900 FvH4_6g34011 FvH4_6g34011 FvH4_6g34011 FvH4_6g34011 FvH4_6g34030 FvH4_6g34040 FvH4_6g34070 FvH4_6g34070 FvH4_7g12830
malus_domestica MD09G1189800.v1.1 MD09G1189900.v1.1 MD09G1190000.v1.1 MD14G1088800.v1.1 MD14G1088900.v1.1 MD17G1172900.v1.1
pyrus_communis pycom07g03460 pycom09g10650 pycom14g07860
rosa_chinensis RchiOBHm_Chr1g0351891 RchiOBHm_Chr1g0351901 RchiOBHm_Chr2g0143771 RchiOBHm_Chr2g0143861 RchiOBHm_Chr2g0143881 RchiOBHm_Chr2g0143941 RchiOBHm_Chr2g0143951 RchiOBHm_Chr2g0144081 RchiOBHm_Chr2g0144091 RchiOBHm_Chr2g0144211 RchiOBHm_Chr2g0144231 RchiOBHm_Chr2g0144241 RchiOBHm_Chr2g0144291 RchiOBHm_Chr2g0144301 RchiOBHm_Chr2g0144311 RchiOBHm_Chr2g0144331 RchiOBHm_Chr2g0144341 RchiOBHm_Chr4g0422021 RchiOBHm_Chr4g0422031
rosa_laevigata RLG00000007639 RLG00000020063 RLG00000020071 RLG00000020072 RLG00000020074
rosa_multiflora Rmu_co8214640.1_g000001 Rmu_co8471033.1_g000001 Rmu_sc0000789.1_g000002 Rmu_sc0001321.1_g000001 Rmu_sc0004340.1_g000001 Rmu_sc0004897.1_g000001 Rmu_sc0007105.1_g000005 Rmu_sc0009498.1_g000001 Rmu_sc0009498.1_g000002 Rmu_sc0019136.1_g000001 Rmu_sc0020327.1_g000002 Rmu_sc0020327.1_g000003 Rmu_sc0022905.1_g000001 Rmu_sc0032602.1_g000003 Rmu_sc0032602.1_g000004
rosa_roxburghii Rroxscaffold_2G00101380 Rroxscaffold_2G00101390 Rroxscaffold_2G00101400 Rroxscaffold_2G00101410 Rroxscaffold_2G00101480 Rroxscaffold_2G00101490 Rroxscaffold_4G00303470 Rroxscaffold_5G00364130 Rroxscaffold_5G00364150
rosa_rugosa Rorug01G0222600 Rorug02G0384700 Rorug02G0384800 Rorug02G0385800 Rorug02G0385900 Rorug02G0386000 Rorug02G0386000 Rorug02G0386100 Rorug04G0176700 Rorug04G0176800.1
rosa_samantha Rh1AG236500 Rh1AG236600 Rh1BG206900 Rh1CG221000 Rh1CG221100 Rh2BG444800 Rh2BG444900 Rh2BG446600 Rh2BG446700 Rh2BG447600 Rh2BG448100 Rh2BG448400 Rh2BG448500 Rh2BG448700 Rh2BG448800 Rh2CG423500 Rh2CG423600 Rh2CG424800 Rh2CG424900 Rh2CG425100 Rh2CG425200 Rh2DG455200 Rh2DG455300 Rh2DG456900 Rh2DG457000 Rh2DG457100 Rh2DG457600 Rh2DG457900 Rh2DG458000 Rh2DG458300 Rh2DG458400 Rh4AG236100 Rh4AG236200 Rh4BG239200 Rh4CG250900 Rh4CG251100
rosa_wichuraiana Rw0G000400 Rw0G015990 Rw0G017200 Rw1G020580 Rw2G033310 Rw2G035630 Rw2G035640 Rw2G035790 Rw2G035800 Rw2G035840 Rw2G036160 Rw4G019830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 612
AcsI RAATTY 1 cut(s) 201
AfeI AGCGCT 1 cut(s) 572
AfiI CCNNNNNNNGG 1 cut(s) 511
AgsI TTSAA 4 cut(s) 19, 95, 378, 635
AjuI GAANNNNNNNTTGG 2 cut(s) 560, 592
AluBI AGCT 2 cut(s) 357, 545
AluI AGCT 2 cut(s) 357, 545
Alw26I GTCTC 3 cut(s) 118, 265, 651
AlwI GGATC 1 cut(s) 612
Aor51HI AGCGCT 1 cut(s) 572
AoxI GGCC 1 cut(s) 437
ApeKI GCWGC 1 cut(s) 415
ApoI RAATTY 1 cut(s) 201
AseI ATTAAT 1 cut(s) 192
Asp700I GAANNNNTTC 1 cut(s) 572
AspA2I CCTAGG 1 cut(s) 479
AspLEI GCGC 1 cut(s) 573
AsuC2I CCSGG 1 cut(s) 32
AvrII CCTAGG 1 cut(s) 479
BbvI GCAGC 1 cut(s) 427
BccI CCATC 2 cut(s) 247, 677
BclI TGATCA 1 cut(s) 591
BcnI CCSGG 1 cut(s) 32
BcoDI GTCTC 3 cut(s) 118, 265, 651
BfaI CTAG 3 cut(s) 159, 480, 650
BfmI CTRYAG 2 cut(s) 289, 420
BfoI RGCGCY 1 cut(s) 574
BisI GCNGC 1 cut(s) 416
BlnI CCTAGG 1 cut(s) 479
BlpI GCTNAGC 1 cut(s) 53
BlsI GCNGC 1 cut(s) 417
Bme1390I CCNGG 1 cut(s) 32
BmrFI CCNGG 1 cut(s) 32
BmsI GCATC 2 cut(s) 247, 269
Bpu1102I GCTNAGC 1 cut(s) 53
BpuEI CTTGAG 1 cut(s) 525
BpuMI CCSGG 1 cut(s) 32
BsaJI CCNNGG 1 cut(s) 479
BsaXI ACNNNNNCTCC 2 cut(s) 98, 128
Bsc4I CCNNNNNNNGG 1 cut(s) 511
BseDI CCNNGG 1 cut(s) 479
BseGI GGATG 4 cut(s) 133, 262, 319, 688
BseLI CCNNNNNNNGG 1 cut(s) 511
BseMII CTCAG 2 cut(s) 263, 300
BseRI GAGGAG 1 cut(s) 380
BseXI GCAGC 1 cut(s) 427
BshFI GGCC 1 cut(s) 439
BsiSI CCGG 3 cut(s) 31, 101, 440
BslFI GGGAC 1 cut(s) 133
BslI CCNNNNNNNGG 1 cut(s) 511
BsmAI GTCTC 3 cut(s) 118, 265, 651
BsmBI CGTCTC 2 cut(s) 118, 265
BsmFI GGGAC 1 cut(s) 133
BsnI GGCC 1 cut(s) 439
Bsp143I GATC 3 cut(s) 186, 591, 604
Bsp1720I GCTNAGC 1 cut(s) 53
BspANI GGCC 1 cut(s) 439
BspCNI CTCAG 2 cut(s) 262, 301
BspHI TCATGA 1 cut(s) 225
BspMAI CTGCAG 1 cut(s) 424
BspPI GGATC 1 cut(s) 612
BssECI CCNNGG 1 cut(s) 479
BssMI GATC 3 cut(s) 186, 591, 604
BssT1I CCWWGG 1 cut(s) 479
Bst4CI ACNGT 2 cut(s) 563, 621
BstC8I GCNNGC 1 cut(s) 420
BstDEI CTNAG 4 cut(s) 53, 83, 249, 309
BstF5I GGATG 4 cut(s) 133, 262, 319, 688
BstH2I RGCGCY 1 cut(s) 574
BstHHI GCGC 1 cut(s) 573
BstKTI GATC 3 cut(s) 189, 594, 607
BstMAI GTCTC 3 cut(s) 118, 265, 651
BstMBI GATC 3 cut(s) 186, 591, 604
BstMWI GCNNNNNNNGC 1 cut(s) 428
BstSCI CCNGG 1 cut(s) 30
BstSFI CTRYAG 2 cut(s) 289, 420
BstV1I GCAGC 1 cut(s) 427
BsuRI GGCC 1 cut(s) 439
BtsCI GGATG 4 cut(s) 133, 262, 319, 688
BtsI GCAGTG 1 cut(s) 106
BtsIMutI CAGTG 1 cut(s) 106
Cac8I GCNNGC 1 cut(s) 420
CciI TCATGA 1 cut(s) 225
CfoI GCGC 1 cut(s) 573
CseI GACGC 1 cut(s) 100
CviAII CATG 3 cut(s) 226, 346, 550
CviJI RGCY 6 cut(s) 8, 357, 418, 431, 439, 545
CviKI_1 RGCY 6 cut(s) 8, 357, 418, 431, 439, 545
DdeI CTNAG 4 cut(s) 53, 83, 249, 309
DpnI GATC 3 cut(s) 188, 593, 606
DpnII GATC 3 cut(s) 186, 591, 604
Eco130I CCWWGG 1 cut(s) 479
Eco32I GATATC 1 cut(s) 599
Eco47III AGCGCT 1 cut(s) 572
EcoRI GAATTC 1 cut(s) 201
EcoRV GATATC 1 cut(s) 599
EcoT14I CCWWGG 1 cut(s) 479
EcoT22I ATGCAT 1 cut(s) 262
ErhI CCWWGG 1 cut(s) 479
Esp3I CGTCTC 2 cut(s) 118, 265
FaeI CATG 3 cut(s) 229, 349, 553
FaiI YATR 8 cut(s) 227, 291, 347, 353, 456, 476, 510, 551
FalI AAGNNNNNCTT 2 cut(s) 560, 592
FaqI GGGAC 1 cut(s) 133
FatI CATG 3 cut(s) 225, 345, 549
FbaI TGATCA 1 cut(s) 591
Fnu4HI GCNGC 1 cut(s) 416
FokI GGATG 4 cut(s) 120, 269, 326, 695
Fsp4HI GCNGC 1 cut(s) 416
FspBI CTAG 3 cut(s) 159, 480, 650
GlaI GCGC 1 cut(s) 572
GluI GCNGC 1 cut(s) 416
HaeII RGCGCY 1 cut(s) 574
HaeIII GGCC 1 cut(s) 439
HapII CCGG 3 cut(s) 31, 101, 440
HgaI GACGC 1 cut(s) 100
HhaI GCGC 1 cut(s) 573
Hin1II CATG 3 cut(s) 229, 349, 553
Hin6I GCGC 1 cut(s) 571
HinP1I GCGC 1 cut(s) 571
HinfI GANTC 1 cut(s) 340
HpaII CCGG 3 cut(s) 31, 101, 440
Hpy166II GTNNAC 2 cut(s) 181, 400
Hpy188I TCNGA 4 cut(s) 200, 252, 364, 596
Hpy188III TCNNGA 3 cut(s) 16, 226, 602
Hpy8I GTNNAC 2 cut(s) 181, 400
HpyAV CCTTC 2 cut(s) 219, 223
HpyCH4III ACNGT 2 cut(s) 563, 621
HpyCH4IV ACGT 1 cut(s) 123
HpyCH4V TGCA 2 cut(s) 260, 422
HpyF10VI GCNNNNNNNGC 1 cut(s) 428
HpyF3I CTNAG 4 cut(s) 53, 83, 249, 309
HpySE526I ACGT 1 cut(s) 123
Hsp92II CATG 3 cut(s) 229, 349, 553
HspAI GCGC 1 cut(s) 571
Ksp22I TGATCA 1 cut(s) 591
Kzo9I GATC 3 cut(s) 186, 591, 604
LpnPI CCDG 8 cut(s) 44, 114, 165, 421, 432, 453, 587, 627
Lsp1109I GCAGC 1 cut(s) 427
LweI GCATC 2 cut(s) 247, 269
MaeI CTAG 3 cut(s) 159, 480, 650
MaeII ACGT 1 cut(s) 123
MaeIII GTNAC 1 cut(s) 124
MalI GATC 3 cut(s) 188, 593, 606
MboI GATC 3 cut(s) 186, 591, 604
MboII GAAGA 1 cut(s) 31
MfeI CAATTG 1 cut(s) 695
MluCI AATT 6 cut(s) 47, 90, 201, 384, 656, 695
MmeI TCCRAC 1 cut(s) 284
MnlI CCTC 4 cut(s) 147, 304, 358, 667
Mph1103I ATGCAT 1 cut(s) 262
MroXI GAANNNNTTC 1 cut(s) 572
MseI TTAA 2 cut(s) 168, 192
MslI CAYNNNNRTG 2 cut(s) 265, 350
MspI CCGG 3 cut(s) 31, 101, 440
MspR9I CCNGG 1 cut(s) 32
MunI CAATTG 1 cut(s) 695
MwoI GCNNNNNNNGC 1 cut(s) 428
NciI CCSGG 1 cut(s) 32
NdeII GATC 3 cut(s) 186, 591, 604
NlaIII CATG 3 cut(s) 229, 349, 553
NsiI ATGCAT 1 cut(s) 262
PagI TCATGA 1 cut(s) 225
PdmI GAANNNNTTC 1 cut(s) 572
PfeI GAWTC 1 cut(s) 340
PkrI GCNGC 1 cut(s) 417
PshBI ATTAAT 1 cut(s) 192
PstI CTGCAG 1 cut(s) 424
RseI CAYNNNNRTG 2 cut(s) 265, 350
SaqAI TTAA 2 cut(s) 168, 192
SatI GCNGC 1 cut(s) 416
Sau3AI GATC 3 cut(s) 186, 591, 604
ScrFI CCNGG 1 cut(s) 32
SetI ASST 8 cut(s) 126, 131, 359, 481, 485, 547, 587, 616
SfaNI GCATC 2 cut(s) 247, 269
SfcI CTRYAG 2 cut(s) 289, 420
SmiMI CAYNNNNRTG 2 cut(s) 265, 350
SmlI CTYRAG 1 cut(s) 540
SmoI CTYRAG 1 cut(s) 540
Sse9I AATT 6 cut(s) 47, 90, 201, 384, 656, 695
SspMI CTAG 3 cut(s) 159, 480, 650
StyD4I CCNGG 1 cut(s) 30
StyI CCWWGG 1 cut(s) 479
TaaI ACNGT 2 cut(s) 563, 621
TaiI ACGT 1 cut(s) 126
TaqI TCGA 2 cut(s) 26, 212
TasI AATT 6 cut(s) 47, 90, 201, 384, 656, 695
TfiI GAWTC 1 cut(s) 340
Tru1I TTAA 2 cut(s) 168, 192
Tru9I TTAA 2 cut(s) 168, 192
TscAI CASTG 1 cut(s) 113
TseI GCWGC 1 cut(s) 415
TspDTI ATGAA 3 cut(s) 214, 242, 536
TspRI CASTG 1 cut(s) 113
VspI ATTAAT 1 cut(s) 192
XapI RAATTY 1 cut(s) 201
XmaJI CCTAGG 1 cut(s) 479
XmnI GAANNNNTTC 1 cut(s) 572
XspI CTAG 3 cut(s) 159, 480, 650
Zsp2I ATGCAT 1 cut(s) 262
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.