FvH4_7g12830
ERF Family

mTERF

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0000263
Physical Location & Seq
Reverse (-)
11600322 .. 11602029
1708 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g12830.t1

Sequence Viewer

Length: 1011 bp
ATGTCCCCAGAAATCGCTCTCAATGTGTCAGAGAGGGTACACTTTGAAACCCGAGAGCGACCTGACTCGGTTATTAAGCTTCTCAAAGATCATGGACTCAATGATGCCCAAATCCCATTGCTTGTTAAGAAACTCCCAAGGCTCCTGTTATACAATGCTGAAACCCTTTTGCCCAAACTTGAGTTTTTCGGTTCTATAGGCCTTTCAGGCACTTGCCTCCTTTGCAATCCCATTATCTTGACGCGGAGCTTAGAGAAATGTATCCTTCCTTGTTATGATCTGATCAAAAGTATAGTTGTTGAGGATAAAAGGGTTGCTAAATTCTTTAGGACCCCGAAATGCACAGTTTCAGCCGACTCACTGAGATATCTTGTGTCTATTGTTGCCATTTTGAGAGGGCTTCAAGTGCCGGGTTCCACAATCTCTATTTATGTGACATGGTATCCTTTGATGTTCGTCCAAAAAACTGAGTGTTTCAAGGAAGATGTCAACAAGGTCATGAGTATGGGAATCCCACCTTCATCATATTCGACGTTCATGCAAGCACTAGTTGCGACTTTTCCGTTGGATGCATCAAAGTGGGAACAAAAGATGCAATTTTATAAGGGATGGGGTTGGACTGAAGATGATATCATATCGGCATTTAGACAGAATCCCATGTTTATGAAATTGTCCGAGAAGATTGTTTCACCCAAGATGTATTTTCTTGTGAACAAAATGGGGTGGCAGCCTACAGATGTGGCTCGGAATTCATATGTTTTAGGTTATAGTTTGGAGAAGCGGATCATACCTACATGTTCAGTTATTAGGGTTCTCCTGTTGAAGGGCTTAATAAAGAAGGGAGAATGTTCCTTGGTTAACATTCTGAAGATGAGTGAGAAGTACTTGAATAAGTTTTTGCTCAAATATCAACAGCAAGTACCTGAAATATTGAGCATCTATCAAGGTAAAACAAGTCTTGCAGAACTTGGCTTAGGATTTGAAGAGACAGCTAGAGTGGATCATTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
mTERF

Protein Analysis

337

Amino Acids

38.34

Weight (kDa)

9.16

Isoelectric Point (pI)

46.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
mTERF PF02536 25 - 139 8.7e-09 mTERF
mTERF PF02536 128 - 294 1.2e-19 mTERF
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000263)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G21150 AT1G21150 AT1G21150
fragaria_vesca FvH4_4g17900 FvH4_6g26110 FvH4_6g33880 FvH4_6g33900 FvH4_6g34011 FvH4_6g34011 FvH4_6g34011 FvH4_6g34011 FvH4_6g34030 FvH4_6g34040 FvH4_6g34070 FvH4_6g34070 FvH4_7g12830
malus_domestica MD09G1189800.v1.1 MD09G1189900.v1.1 MD09G1190000.v1.1 MD14G1088800.v1.1 MD14G1088900.v1.1 MD17G1172900.v1.1
pyrus_communis pycom07g03460 pycom09g10650 pycom14g07860
rosa_chinensis RchiOBHm_Chr1g0351891 RchiOBHm_Chr1g0351901 RchiOBHm_Chr2g0143771 RchiOBHm_Chr2g0143861 RchiOBHm_Chr2g0143881 RchiOBHm_Chr2g0143941 RchiOBHm_Chr2g0143951 RchiOBHm_Chr2g0144081 RchiOBHm_Chr2g0144091 RchiOBHm_Chr2g0144211 RchiOBHm_Chr2g0144231 RchiOBHm_Chr2g0144241 RchiOBHm_Chr2g0144291 RchiOBHm_Chr2g0144301 RchiOBHm_Chr2g0144311 RchiOBHm_Chr2g0144331 RchiOBHm_Chr2g0144341 RchiOBHm_Chr4g0422021 RchiOBHm_Chr4g0422031
rosa_laevigata RLG00000007639 RLG00000020063 RLG00000020071 RLG00000020072 RLG00000020074
rosa_multiflora Rmu_co8214640.1_g000001 Rmu_co8471033.1_g000001 Rmu_sc0000789.1_g000002 Rmu_sc0001321.1_g000001 Rmu_sc0004340.1_g000001 Rmu_sc0004897.1_g000001 Rmu_sc0007105.1_g000005 Rmu_sc0009498.1_g000001 Rmu_sc0009498.1_g000002 Rmu_sc0019136.1_g000001 Rmu_sc0020327.1_g000002 Rmu_sc0020327.1_g000003 Rmu_sc0022905.1_g000001 Rmu_sc0032602.1_g000003 Rmu_sc0032602.1_g000004
rosa_roxburghii Rroxscaffold_2G00101380 Rroxscaffold_2G00101390 Rroxscaffold_2G00101400 Rroxscaffold_2G00101410 Rroxscaffold_2G00101480 Rroxscaffold_2G00101490 Rroxscaffold_4G00303470 Rroxscaffold_5G00364130 Rroxscaffold_5G00364150
rosa_rugosa Rorug01G0222600 Rorug02G0384700 Rorug02G0384800 Rorug02G0385800 Rorug02G0385900 Rorug02G0386000 Rorug02G0386000 Rorug02G0386100 Rorug04G0176700 Rorug04G0176800.1
rosa_samantha Rh1AG236500 Rh1AG236600 Rh1BG206900 Rh1CG221000 Rh1CG221100 Rh2BG444800 Rh2BG444900 Rh2BG446600 Rh2BG446700 Rh2BG447600 Rh2BG448100 Rh2BG448400 Rh2BG448500 Rh2BG448700 Rh2BG448800 Rh2CG423500 Rh2CG423600 Rh2CG424800 Rh2CG424900 Rh2CG425100 Rh2CG425200 Rh2DG455200 Rh2DG455300 Rh2DG456900 Rh2DG457000 Rh2DG457100 Rh2DG457600 Rh2DG457900 Rh2DG458000 Rh2DG458300 Rh2DG458400 Rh4AG236100 Rh4AG236200 Rh4BG239200 Rh4CG250900 Rh4CG251100
rosa_wichuraiana Rw0G000400 Rw0G015990 Rw0G017200 Rw1G020580 Rw2G033310 Rw2G035630 Rw2G035640 Rw2G035790 Rw2G035800 Rw2G035840 Rw2G036160 Rw4G019830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 603
AccII CGCG 1 cut(s) 244
AciI CCGC 2 cut(s) 244, 781
AclWI GGATC 2 cut(s) 791, 1008
AcsI RAATTY 2 cut(s) 320, 748
AcuI CTGAAG 2 cut(s) 642, 887
AfaI GTAC 3 cut(s) 39, 884, 921
AfiI CCNNNNNNNGG 1 cut(s) 823
AflIII ACRYGT 1 cut(s) 794
AgsI TTSAA 6 cut(s) 47, 404, 478, 823, 889, 983
AhlI ACTAGT 1 cut(s) 547
AluBI AGCT 3 cut(s) 79, 249, 992
AluI AGCT 3 cut(s) 79, 249, 992
Alw26I GTCTC 1 cut(s) 980
AlwI GGATC 2 cut(s) 791, 1008
Ama87I CYCGRG 1 cut(s) 51
AoxI GGCC 1 cut(s) 199
ApeKI GCWGC 1 cut(s) 727
ApoI RAATTY 2 cut(s) 320, 748
AspS9I GGNCC 1 cut(s) 330
AsuC2I CCSGG 1 cut(s) 411
AsuHPI GGTGA 1 cut(s) 681
AvaI CYCGRG 1 cut(s) 51
AvaII GGWCC 1 cut(s) 330
BbvI GCAGC 1 cut(s) 739
BccI CCATC 1 cut(s) 603
BcgI CGANNNNNNTGC 2 cut(s) 520, 554
BciVI GTATCC 2 cut(s) 272, 453
BclI TGATCA 1 cut(s) 282
BcnI CCSGG 1 cut(s) 411
BcoDI GTCTC 1 cut(s) 980
BcuI ACTAGT 1 cut(s) 547
BfaI CTAG 2 cut(s) 548, 993
BfmI CTRYAG 2 cut(s) 195, 732
BfuI GTATCC 2 cut(s) 272, 453
BglI GCCNNNNNGGC 1 cut(s) 207
BisI GCNGC 1 cut(s) 728
BlsI GCNGC 1 cut(s) 729
BmcAI AGTACT 1 cut(s) 884
Bme1390I CCNGG 1 cut(s) 411
Bme18I GGWCC 1 cut(s) 330
BmeT110I CYCGRG 1 cut(s) 51
BmgT120I GGNCC 1 cut(s) 330
BmiI GGNNCC 3 cut(s) 143, 332, 415
BmrFI CCNGG 1 cut(s) 411
BmsI GCATC 5 cut(s) 94, 559, 581, 582, 945
Bpu10I CCTNAGC 1 cut(s) 973
BpuEI CTTGAG 1 cut(s) 200
BpuMI CCSGG 1 cut(s) 411
BsaJI CCNNGG 2 cut(s) 137, 852
Bsc4I CCNNNNNNNGG 1 cut(s) 823
Bse3DI GCAATG 1 cut(s) 116
BseDI CCNNGG 2 cut(s) 137, 852
BseGI GGATG 2 cut(s) 574, 614
BseLI CCNNNNNNNGG 1 cut(s) 823
BseMI GCAATG 1 cut(s) 116
BseMII CTCAG 2 cut(s) 353, 459
BseXI GCAGC 1 cut(s) 739
Bsh1236I CGCG 1 cut(s) 244
BshFI GGCC 1 cut(s) 201
BsiHKCI CYCGRG 1 cut(s) 51
BsiSI CCGG 1 cut(s) 410
BslI CCNNNNNNNGG 1 cut(s) 823
BsmAI GTCTC 1 cut(s) 980
BsnI GGCC 1 cut(s) 201
BsoBI CYCGRG 1 cut(s) 51
Bsp143I GATC 5 cut(s) 88, 277, 282, 783, 1000
BspACI CCGC 2 cut(s) 244, 781
BspANI GGCC 1 cut(s) 201
BspCNI CTCAG 2 cut(s) 354, 460
BspFNI CGCG 1 cut(s) 244
BspHI TCATGA 1 cut(s) 498
BspLI GGNNCC 3 cut(s) 143, 332, 415
BspPI GGATC 2 cut(s) 791, 1008
BsrDI GCAATG 1 cut(s) 116
BssECI CCNNGG 2 cut(s) 137, 852
BssMI GATC 5 cut(s) 88, 277, 282, 783, 1000
BssT1I CCWWGG 2 cut(s) 137, 852
Bst4CI ACNGT 1 cut(s) 346
Bst6I CTCTTC 1 cut(s) 978
BstAPI GCANNNNNTGC 1 cut(s) 551
BstC8I GCNNGC 1 cut(s) 543
BstDEI CTNAG 4 cut(s) 250, 362, 468, 973
BstENI CCTNNNNNAGG 1 cut(s) 821
BstF5I GGATG 2 cut(s) 574, 614
BstFNI CGCG 1 cut(s) 244
BstKTI GATC 5 cut(s) 91, 280, 285, 786, 1003
BstMAI GTCTC 1 cut(s) 980
BstMBI GATC 5 cut(s) 88, 277, 282, 783, 1000
BstMWI GCNNNNNNNGC 4 cut(s) 207, 222, 406, 551
BstNSI RCATGY 1 cut(s) 798
BstSCI CCNGG 1 cut(s) 409
BstSFI CTRYAG 2 cut(s) 195, 732
BstUI CGCG 1 cut(s) 244
BstV1I GCAGC 1 cut(s) 739
BsuI GTATCC 2 cut(s) 272, 453
BsuRI GGCC 1 cut(s) 201
BtsCI GGATG 2 cut(s) 574, 614
BtsIMutI CAGTG 1 cut(s) 359
Cac8I GCNNGC 1 cut(s) 543
CciI TCATGA 1 cut(s) 498
Cfr13I GGNCC 1 cut(s) 330
CseI GACGC 1 cut(s) 250
Csp6I GTAC 3 cut(s) 38, 883, 920
CviAII CATG 6 cut(s) 92, 438, 499, 538, 658, 795
CviQI GTAC 3 cut(s) 38, 883, 920
DdeI CTNAG 4 cut(s) 250, 362, 468, 973
DpnI GATC 5 cut(s) 90, 279, 284, 785, 1002
DpnII GATC 5 cut(s) 88, 277, 282, 783, 1000
Eam1104I CTCTTC 1 cut(s) 978
EarI CTCTTC 1 cut(s) 978
Eco130I CCWWGG 2 cut(s) 137, 852
Eco147I AGGCCT 1 cut(s) 201
Eco32I GATATC 2 cut(s) 368, 631
Eco47I GGWCC 1 cut(s) 330
Eco57I CTGAAG 2 cut(s) 642, 887
Eco88I CYCGRG 1 cut(s) 51
EcoNI CCTNNNNNAGG 1 cut(s) 821
EcoO109I RGGNCCY 1 cut(s) 330
EcoRI GAATTC 1 cut(s) 748
EcoRV GATATC 2 cut(s) 368, 631
EcoT14I CCWWGG 2 cut(s) 137, 852
EcoT22I ATGCAT 1 cut(s) 574
ErhI CCWWGG 2 cut(s) 137, 852
FaeI CATG 6 cut(s) 95, 441, 502, 541, 661, 798
FatI CATG 6 cut(s) 91, 437, 498, 537, 657, 794
FauNDI CATATG 1 cut(s) 754
FbaI TGATCA 1 cut(s) 282
Fnu4HI GCNGC 1 cut(s) 728
FokI GGATG 2 cut(s) 581, 621
Fsp4HI GCNGC 1 cut(s) 728
FspBI CTAG 2 cut(s) 548, 993
GluI GCNGC 1 cut(s) 728
HaeIII GGCC 1 cut(s) 201
HapII CCGG 1 cut(s) 410
HgaI GACGC 1 cut(s) 250
Hin1II CATG 6 cut(s) 95, 441, 502, 541, 661, 798
HincII GTYRAC 2 cut(s) 490, 859
HindII GTYRAC 2 cut(s) 490, 859
HindIII AAGCTT 1 cut(s) 77
HinfI GANTC 5 cut(s) 65, 96, 356, 510, 652
HpaI GTTAAC 1 cut(s) 859
HpaII CCGG 1 cut(s) 410
HphI GGTGA 1 cut(s) 681
Hpy166II GTNNAC 4 cut(s) 40, 490, 712, 859
Hpy188I TCNGA 5 cut(s) 31, 282, 676, 747, 867
Hpy188III TCNNGA 2 cut(s) 238, 499
Hpy8I GTNNAC 4 cut(s) 40, 490, 712, 859
Hpy99I CGWCG 1 cut(s) 535
HpyAV CCTTC 4 cut(s) 275, 528, 817, 832
HpyCH4III ACNGT 1 cut(s) 346
HpyCH4IV ACGT 1 cut(s) 533
HpyCH4V TGCA 6 cut(s) 225, 342, 541, 572, 595, 962
HpyF10VI GCNNNNNNNGC 4 cut(s) 207, 222, 406, 551
HpyF3I CTNAG 4 cut(s) 250, 362, 468, 973
HpySE526I ACGT 1 cut(s) 533
Hsp92II CATG 6 cut(s) 95, 441, 502, 541, 661, 798
Ksp22I TGATCA 1 cut(s) 282
KspAI GTTAAC 1 cut(s) 859
Kzo9I GATC 5 cut(s) 88, 277, 282, 783, 1000
LmnI GCTCC 2 cut(s) 147, 246
LpnPI CCDG 7 cut(s) 21, 75, 158, 192, 423, 830, 936
Lsp1109I GCAGC 1 cut(s) 739
LweI GCATC 5 cut(s) 94, 559, 581, 582, 945
MaeI CTAG 2 cut(s) 548, 993
MaeII ACGT 1 cut(s) 533
MaeIII GTNAC 1 cut(s) 433
MalI GATC 5 cut(s) 90, 279, 284, 785, 1002
MboI GATC 5 cut(s) 88, 277, 282, 783, 1000
MboII GAAGA 5 cut(s) 494, 635, 691, 880, 995
MluCI AATT 4 cut(s) 320, 596, 668, 748
MlyI GAGTC 3 cut(s) 59, 90, 350
MmeI TCCRAC 2 cut(s) 546, 596
MnlI CCTC 4 cut(s) 27, 227, 295, 389
Mph1103I ATGCAT 1 cut(s) 574
MseI TTAA 4 cut(s) 75, 126, 830, 858
MslI CAYNNNNRTG 3 cut(s) 503, 577, 662
MspI CCGG 1 cut(s) 410
MspR9I CCNGG 1 cut(s) 411
MvnI CGCG 1 cut(s) 244
MwoI GCNNNNNNNGC 4 cut(s) 207, 222, 406, 551
NciI CCSGG 1 cut(s) 411
NdeI CATATG 1 cut(s) 754
NdeII GATC 5 cut(s) 88, 277, 282, 783, 1000
NlaIII CATG 6 cut(s) 95, 441, 502, 541, 661, 798
NlaIV GGNNCC 3 cut(s) 143, 332, 415
NmuCI GTSAC 1 cut(s) 433
NsiI ATGCAT 1 cut(s) 574
NspI RCATGY 1 cut(s) 798
PagI TCATGA 1 cut(s) 498
PceI AGGCCT 1 cut(s) 201
PciI ACATGT 1 cut(s) 794
PfeI GAWTC 2 cut(s) 510, 652
PkrI GCNGC 1 cut(s) 729
PleI GAGTC 3 cut(s) 59, 90, 350
PpsI GAGTC 3 cut(s) 59, 90, 350
PpuMI RGGWCCY 1 cut(s) 330
PscI ACATGT 1 cut(s) 794
PsiI TTATAA 1 cut(s) 603
Psp5II RGGWCCY 1 cut(s) 330
PspN4I GGNNCC 3 cut(s) 143, 332, 415
PspPI GGNCC 1 cut(s) 330
PspPPI RGGWCCY 1 cut(s) 330
RsaI GTAC 3 cut(s) 39, 884, 921
RsaNI GTAC 3 cut(s) 38, 883, 920
RseI CAYNNNNRTG 3 cut(s) 503, 577, 662
SaqAI TTAA 4 cut(s) 75, 126, 830, 858
SatI GCNGC 1 cut(s) 728
Sau3AI GATC 5 cut(s) 88, 277, 282, 783, 1000
Sau96I GGNCC 1 cut(s) 330
ScaI AGTACT 1 cut(s) 884
SchI GAGTC 3 cut(s) 59, 90, 350
ScrFI CCNGG 1 cut(s) 411
SfaNI GCATC 5 cut(s) 94, 559, 581, 582, 945
SfcI CTRYAG 2 cut(s) 195, 732
SinI GGWCC 1 cut(s) 330
SmiMI CAYNNNNRTG 3 cut(s) 503, 577, 662
SmlI CTYRAG 1 cut(s) 179
SmoI CTYRAG 1 cut(s) 179
SpeI ACTAGT 1 cut(s) 547
Sse9I AATT 4 cut(s) 320, 596, 668, 748
SseBI AGGCCT 1 cut(s) 201
SsiI CCGC 2 cut(s) 244, 781
SspI AATATT 1 cut(s) 930
SspMI CTAG 2 cut(s) 548, 993
StuI AGGCCT 1 cut(s) 201
StyD4I CCNGG 1 cut(s) 409
StyI CCWWGG 2 cut(s) 137, 852
TaaI ACNGT 1 cut(s) 346
TaiI ACGT 1 cut(s) 536
TaqI TCGA 1 cut(s) 530
TasI AATT 4 cut(s) 320, 596, 668, 748
TatI WGTACW 1 cut(s) 882
TfiI GAWTC 2 cut(s) 510, 652
Tru1I TTAA 4 cut(s) 75, 126, 830, 858
Tru9I TTAA 4 cut(s) 75, 126, 830, 858
TscAI CASTG 1 cut(s) 366
TseFI GTSAC 1 cut(s) 433
TseI GCWGC 1 cut(s) 727
Tsp45I GTSAC 1 cut(s) 433
TspDTI ATGAA 4 cut(s) 510, 526, 680, 741
TspGWI ACGGA 1 cut(s) 552
TspRI CASTG 1 cut(s) 366
VpaK11BI GGWCC 1 cut(s) 330
XagI CCTNNNNNAGG 1 cut(s) 821
XapI RAATTY 2 cut(s) 320, 748
XceI RCATGY 1 cut(s) 798
XspI CTAG 2 cut(s) 548, 993
ZrmI AGTACT 1 cut(s) 884
Zsp2I ATGCAT 1 cut(s) 574
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.