FvH4_6g34070
ERF Family

Mitochondrial transcription termination factor family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000263
Physical Location & Seq
Forward (+)
26927497 .. 26930126
2630 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g34070.t2

Sequence Viewer

Length: 1239 bp
ATGTTTGGGTTCTGTTGTAGAAGATTGCAATTACTAGTTCCAAGCATTTCTGTTGATTCTTCAGTGACCCATTTTCAAAAGGCATCTCCTTTTAGCACATCATATTCGTCATTATCATTCATAGGGTCTGAAATACATGATGATAAACCAGAAGATGGAAAACACCAATCTTTTATAGTTTCATACTTGATAAACTCATTTGGGTTCTCCCCACAACTTGCTCTCTCTTTGTCCAAGAAGCGAGGAGTACACTTCAACTCCCCGAAACAACCAGATTCGGTCATTAAGCTTCTGAGAGACTATGGATTCAGTGATACCCATGTCTCTGAAATTGTTAAGAAACGCCCAGACCTGCTCTCATACAATGCTCAAGAGACCATAATGCCCAAACTCGAGTTTTTCACTTCTGTTGGCATAAGAGGCACTGCCCTTGCTCACATCATTTCCGGCAACCCAAAGTTTTTGACCTTTAGCTTAGAGGAAAATCTCAGACCCTGTTATGTTATAATCAGAAGTCTACCGATCCCGGACAAAATGGTGGGTCTTGTTCTTTCCAAATTGTATCAGGGATTCACGGTCACTGCGCCATTACTAAGCAATATTGCTCCCAATATTGCATTTCTCAAGTCAGTTCAGGTGCCTGAATCCTCGGTCAATTTGTATCTGAGCATTACCCTTTTCGCAGTGTCACGGGAAACCCACAAGTGTAAGGAAAACGTGGAGAGGGTCATCAGTATGGGAATAAGCCCCTCCTCATCTAGCTTTATGAAGGCCTTGTATGTGATATCTGCGGTGGATGGATTGAAATGGGTACAAAGGATGGAAGTATACAAGACCACATTCGGTTGGACTGAAGATGATTTCTTCTTGGCATTTAGAAAAAATCCCATGTTCATGGGAATGTCAGAGAAGATAGTTTTAAGTAAAATTGATTTTCTTGTCAAGAGAATGGGTTGGGAGCCTGCACTTGTAGGTGCAAGTCCGAGTGTTCTAACTTATAGTTTGGAGAAGTGGACTATACCTAGGTGTTCAGTTATTAGAGTGCTCCTGTTGAAGGGCTTAATAATGAAGGGAGAGTTTTCTTTGGGTGGCACGGTGACTACCAGTAAGAGTTACTTCTTGGATAGGTTTGTGATCAGATATCAAGAACAAGTACCTGAGTTGTTGAATATCTTTCAAGGGAAAATGAGTATTGTAGACGTTGGCTTAGGGTTTGAGGAAACAGGTGAAACAACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
mTERF

Protein Analysis

413

Amino Acids

46.2

Weight (kDa)

9.08

Isoelectric Point (pI)

41.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
mTERF PF02536 95 - 177 3.2e-13 mTERF
mTERF PF02536 170 - 373 2.9e-15 mTERF
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000263)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G21150 AT1G21150 AT1G21150
fragaria_vesca FvH4_4g17900 FvH4_6g26110 FvH4_6g33880 FvH4_6g33900 FvH4_6g34011 FvH4_6g34011 FvH4_6g34011 FvH4_6g34011 FvH4_6g34030 FvH4_6g34040 FvH4_6g34070 FvH4_6g34070 FvH4_7g12830
malus_domestica MD09G1189800.v1.1 MD09G1189900.v1.1 MD09G1190000.v1.1 MD14G1088800.v1.1 MD14G1088900.v1.1 MD17G1172900.v1.1
pyrus_communis pycom07g03460 pycom09g10650 pycom14g07860
rosa_chinensis RchiOBHm_Chr1g0351891 RchiOBHm_Chr1g0351901 RchiOBHm_Chr2g0143771 RchiOBHm_Chr2g0143861 RchiOBHm_Chr2g0143881 RchiOBHm_Chr2g0143941 RchiOBHm_Chr2g0143951 RchiOBHm_Chr2g0144081 RchiOBHm_Chr2g0144091 RchiOBHm_Chr2g0144211 RchiOBHm_Chr2g0144231 RchiOBHm_Chr2g0144241 RchiOBHm_Chr2g0144291 RchiOBHm_Chr2g0144301 RchiOBHm_Chr2g0144311 RchiOBHm_Chr2g0144331 RchiOBHm_Chr2g0144341 RchiOBHm_Chr4g0422021 RchiOBHm_Chr4g0422031
rosa_laevigata RLG00000007639 RLG00000020063 RLG00000020071 RLG00000020072 RLG00000020074
rosa_multiflora Rmu_co8214640.1_g000001 Rmu_co8471033.1_g000001 Rmu_sc0000789.1_g000002 Rmu_sc0001321.1_g000001 Rmu_sc0004340.1_g000001 Rmu_sc0004897.1_g000001 Rmu_sc0007105.1_g000005 Rmu_sc0009498.1_g000001 Rmu_sc0009498.1_g000002 Rmu_sc0019136.1_g000001 Rmu_sc0020327.1_g000002 Rmu_sc0020327.1_g000003 Rmu_sc0022905.1_g000001 Rmu_sc0032602.1_g000003 Rmu_sc0032602.1_g000004
rosa_roxburghii Rroxscaffold_2G00101380 Rroxscaffold_2G00101390 Rroxscaffold_2G00101400 Rroxscaffold_2G00101410 Rroxscaffold_2G00101480 Rroxscaffold_2G00101490 Rroxscaffold_4G00303470 Rroxscaffold_5G00364130 Rroxscaffold_5G00364150
rosa_rugosa Rorug01G0222600 Rorug02G0384700 Rorug02G0384800 Rorug02G0385800 Rorug02G0385900 Rorug02G0386000 Rorug02G0386000 Rorug02G0386100 Rorug04G0176700 Rorug04G0176800.1
rosa_samantha Rh1AG236500 Rh1AG236600 Rh1BG206900 Rh1CG221000 Rh1CG221100 Rh2BG444800 Rh2BG444900 Rh2BG446600 Rh2BG446700 Rh2BG447600 Rh2BG448100 Rh2BG448400 Rh2BG448500 Rh2BG448700 Rh2BG448800 Rh2CG423500 Rh2CG423600 Rh2CG424800 Rh2CG424900 Rh2CG425100 Rh2CG425200 Rh2DG455200 Rh2DG455300 Rh2DG456900 Rh2DG457000 Rh2DG457100 Rh2DG457600 Rh2DG457900 Rh2DG458000 Rh2DG458300 Rh2DG458400 Rh4AG236100 Rh4AG236200 Rh4BG239200 Rh4CG250900 Rh4CG251100
rosa_wichuraiana Rw0G000400 Rw0G015990 Rw0G017200 Rw1G020580 Rw2G033310 Rw2G035630 Rw2G035640 Rw2G035790 Rw2G035800 Rw2G035840 Rw2G036160 Rw4G019830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 506
Acc36I ACCTGC 1 cut(s) 360
AccB1I GGYRCC 1 cut(s) 637
AccB7I CCANNNNNTGG 1 cut(s) 155
AccI GTMKAC 3 cut(s) 517, 828, 1197
AciI CCGC 1 cut(s) 791
AclWI GGATC 1 cut(s) 517
AcuI CTGAAG 2 cut(s) 45, 873
AfaI GTAC 3 cut(s) 249, 813, 1155
AfiI CCNNNNNNNGG 2 cut(s) 155, 1054
AgsI TTSAA 6 cut(s) 77, 256, 805, 1054, 1168, 1178
AhlI ACTAGT 1 cut(s) 34
AluBI AGCT 3 cut(s) 289, 474, 762
AluI AGCT 3 cut(s) 289, 474, 762
Alw21I GWGCWC 1 cut(s) 1047
Alw26I GTCTC 3 cut(s) 291, 328, 368
AlwI GGATC 1 cut(s) 517
AlwNI CAGNNNCTG 1 cut(s) 495
Ama87I CYCGRG 1 cut(s) 392
AoxI GGCC 1 cut(s) 771
AspA2I CCTAGG 1 cut(s) 1022
AspLEI GCGC 1 cut(s) 586
AsuC2I CCSGG 1 cut(s) 527
AsuHPI GGTGA 2 cut(s) 1108, 1238
AvaI CYCGRG 1 cut(s) 392
AvrII CCTAGG 1 cut(s) 1022
BaeI ACNNNNGTAYC 2 cut(s) 306, 339
BanI GGYRCC 1 cut(s) 637
Bbv12I GWGCWC 1 cut(s) 1047
BccI CCATC 3 cut(s) 149, 791, 814
BclI TGATCA 1 cut(s) 1134
BcnI CCSGG 1 cut(s) 527
BcoDI GTCTC 3 cut(s) 291, 328, 368
BcuI ACTAGT 1 cut(s) 34
BfaI CTAG 3 cut(s) 35, 759, 1023
BfuAI ACCTGC 1 cut(s) 360
BlnI CCTAGG 1 cut(s) 1022
Bme1390I CCNGG 1 cut(s) 527
BmeT110I CYCGRG 1 cut(s) 392
BmiI GGNNCC 2 cut(s) 639, 960
BmrFI CCNGG 1 cut(s) 527
BmsI GCATC 1 cut(s) 92
Bpu10I CCTNAGC 1 cut(s) 1207
BpuEI CTTGAG 2 cut(s) 354, 608
BpuMI CCSGG 1 cut(s) 527
BsaI GGTCTC 1 cut(s) 368
BsaJI CCNNGG 2 cut(s) 648, 1022
BsaXI ACNNNNNCTCC 2 cut(s) 242, 272
Bsc4I CCNNNNNNNGG 2 cut(s) 155, 1054
Bse1I ACTGG 1 cut(s) 1104
BseDI CCNNGG 2 cut(s) 648, 1022
BseGI GGATG 2 cut(s) 802, 825
BseLI CCNNNNNNNGG 2 cut(s) 155, 1054
BseMII CTCAG 4 cut(s) 284, 502, 656, 1149
BseNI ACTGG 1 cut(s) 1104
BseRI GAGGAG 2 cut(s) 258, 742
BsgI GTGCAG 1 cut(s) 948
BshFI GGCC 1 cut(s) 773
BshNI GGYRCC 1 cut(s) 637
BsiHKAI GWGCWC 1 cut(s) 1047
BsiHKCI CYCGRG 1 cut(s) 392
BsiSI CCGG 2 cut(s) 447, 527
BslI CCNNNNNNNGG 2 cut(s) 155, 1054
BsmAI GTCTC 3 cut(s) 291, 328, 368
BsnI GGCC 1 cut(s) 773
Bso31I GGTCTC 1 cut(s) 368
BsoBI CYCGRG 1 cut(s) 392
Bsp1286I GDGCHC 1 cut(s) 1047
Bsp143I GATC 2 cut(s) 522, 1134
BspACI CCGC 1 cut(s) 791
BspANI GGCC 1 cut(s) 773
BspCNI CTCAG 4 cut(s) 285, 501, 657, 1150
BspLI GGNNCC 2 cut(s) 639, 960
BspMI ACCTGC 1 cut(s) 360
BspPI GGATC 1 cut(s) 517
BspT107I GGYRCC 1 cut(s) 637
BspTNI GGTCTC 1 cut(s) 368
BsrI ACTGG 1 cut(s) 1104
BssECI CCNNGG 2 cut(s) 648, 1022
BssMI GATC 2 cut(s) 522, 1134
BssNAI GTATAC 1 cut(s) 829
BssT1I CCWWGG 1 cut(s) 1022
Bst1107I GTATAC 1 cut(s) 829
Bst4CI ACNGT 2 cut(s) 577, 1096
BstC8I GCNNGC 1 cut(s) 963
BstDEI CTNAG 7 cut(s) 293, 475, 488, 593, 665, 1158, 1207
BstENI CCTNNNNNAGG 1 cut(s) 1052
BstF5I GGATG 2 cut(s) 802, 825
BstHHI GCGC 1 cut(s) 586
BstKTI GATC 2 cut(s) 525, 1137
BstMAI GTCTC 3 cut(s) 291, 328, 368
BstMBI GATC 2 cut(s) 522, 1134
BstMWI GCNNNNNNNGC 1 cut(s) 420
BstSCI CCNGG 1 cut(s) 525
BstXI CCANNNNNNTGG 1 cut(s) 895
BstZ17I GTATAC 1 cut(s) 829
BsuRI GGCC 1 cut(s) 773
BtsCI GGATG 2 cut(s) 802, 825
BtsI GCAGTG 3 cut(s) 423, 579, 690
BtsIMutI CAGTG 5 cut(s) 69, 316, 423, 579, 690
BveI ACCTGC 1 cut(s) 360
Cac8I GCNNGC 1 cut(s) 963
CaiI CAGNNNCTG 1 cut(s) 495
CfoI GCGC 1 cut(s) 586
Csp6I GTAC 3 cut(s) 248, 812, 1154
CviAII CATG 5 cut(s) 137, 320, 889, 895, 1236
CviJI RGCY 8 cut(s) 289, 474, 747, 762, 773, 961, 1059, 1206
CviKI_1 RGCY 8 cut(s) 289, 474, 747, 762, 773, 961, 1059, 1206
CviQI GTAC 3 cut(s) 248, 812, 1154
DdeI CTNAG 7 cut(s) 293, 475, 488, 593, 665, 1158, 1207
DpnI GATC 2 cut(s) 524, 1136
DpnII GATC 2 cut(s) 522, 1134
Eco130I CCWWGG 1 cut(s) 1022
Eco147I AGGCCT 1 cut(s) 773
Eco31I GGTCTC 1 cut(s) 368
Eco32I GATATC 2 cut(s) 786, 1142
Eco57I CTGAAG 2 cut(s) 45, 873
Eco88I CYCGRG 1 cut(s) 392
EcoNI CCTNNNNNAGG 1 cut(s) 1052
EcoRV GATATC 2 cut(s) 786, 1142
EcoT14I CCWWGG 1 cut(s) 1022
ErhI CCWWGG 1 cut(s) 1022
FaeI CATG 5 cut(s) 140, 323, 892, 898, 1239
FalI AAGNNNNNCTT 2 cut(s) 1100, 1132
FatI CATG 5 cut(s) 136, 319, 888, 894, 1235
FbaI TGATCA 1 cut(s) 1134
FblI GTMKAC 3 cut(s) 517, 828, 1197
FokI GGATG 2 cut(s) 809, 832
FspBI CTAG 3 cut(s) 35, 759, 1023
GlaI GCGC 1 cut(s) 585
HaeIII GGCC 1 cut(s) 773
HapII CCGG 2 cut(s) 447, 527
HhaI GCGC 1 cut(s) 586
Hin1II CATG 5 cut(s) 140, 323, 892, 898, 1239
Hin6I GCGC 1 cut(s) 584
HinP1I GCGC 1 cut(s) 584
HindIII AAGCTT 1 cut(s) 287
HinfI GANTC 5 cut(s) 56, 275, 306, 570, 644
HpaII CCGG 2 cut(s) 447, 527
HphI GGTGA 2 cut(s) 1108, 1238
Hpy166II GTNNAC 5 cut(s) 250, 518, 829, 1014, 1198
Hpy188I TCNGA 9 cut(s) 130, 294, 328, 491, 512, 666, 907, 984, 1139
Hpy188III TCNNGA 3 cut(s) 371, 943, 1145
Hpy8I GTNNAC 5 cut(s) 250, 518, 829, 1014, 1198
HpyAV CCTTC 3 cut(s) 763, 1048, 1063
HpyCH4III ACNGT 2 cut(s) 577, 1096
HpyCH4IV ACGT 2 cut(s) 717, 1200
HpyCH4V TGCA 4 cut(s) 28, 617, 965, 977
HpyF10VI GCNNNNNNNGC 1 cut(s) 420
HpyF3I CTNAG 7 cut(s) 293, 475, 488, 593, 665, 1158, 1207
HpySE526I ACGT 2 cut(s) 717, 1200
Hsp92II CATG 5 cut(s) 140, 323, 892, 898, 1239
HspAI GCGC 1 cut(s) 584
Ksp22I TGATCA 1 cut(s) 1134
Kzo9I GATC 2 cut(s) 522, 1134
LmnI GCTCC 3 cut(s) 610, 958, 1050
LweI GCATC 1 cut(s) 92
MaeI CTAG 3 cut(s) 35, 759, 1023
MaeII ACGT 2 cut(s) 717, 1200
MaeIII GTNAC 5 cut(s) 64, 577, 687, 1096, 1112
MalI GATC 2 cut(s) 524, 1136
MboI GATC 2 cut(s) 522, 1134
MboII GAAGA 6 cut(s) 33, 51, 164, 856, 866, 922
MhlI GDGCHC 1 cut(s) 1047
MluCI AATT 5 cut(s) 29, 330, 557, 655, 927
MmeI TCCRAC 1 cut(s) 827
MnlI CCTC 8 cut(s) 236, 413, 472, 658, 717, 760, 763, 1210
MseI TTAA 4 cut(s) 285, 336, 920, 1061
MslI CAYNNNNRTG 3 cut(s) 734, 893, 899
MspI CCGG 2 cut(s) 447, 527
MspR9I CCNGG 1 cut(s) 527
MwoI GCNNNNNNNGC 1 cut(s) 420
NciI CCSGG 1 cut(s) 527
NdeII GATC 2 cut(s) 522, 1134
NlaIII CATG 5 cut(s) 140, 323, 892, 898, 1239
NlaIV GGNNCC 2 cut(s) 639, 960
NmuCI GTSAC 4 cut(s) 64, 577, 687, 1096
PaeR7I CTCGAG 1 cut(s) 392
PceI AGGCCT 1 cut(s) 773
PfeI GAWTC 5 cut(s) 56, 275, 306, 570, 644
PflMI CCANNNNNTGG 1 cut(s) 155
PfoI TCCNGGA 1 cut(s) 525
PsiI TTATAA 1 cut(s) 506
PspN4I GGNNCC 2 cut(s) 639, 960
PspXI VCTCGAGB 1 cut(s) 392
PstNI CAGNNNCTG 1 cut(s) 495
RsaI GTAC 3 cut(s) 249, 813, 1155
RsaNI GTAC 3 cut(s) 248, 812, 1154
RseI CAYNNNNRTG 3 cut(s) 734, 893, 899
SaqAI TTAA 4 cut(s) 285, 336, 920, 1061
Sau3AI GATC 2 cut(s) 522, 1134
ScrFI CCNGG 1 cut(s) 527
SduI GDGCHC 1 cut(s) 1047
SfaNI GCATC 1 cut(s) 92
Sfr274I CTCGAG 1 cut(s) 392
SlaI CTCGAG 1 cut(s) 392
SmiMI CAYNNNNRTG 3 cut(s) 734, 893, 899
SmlI CTYRAG 3 cut(s) 369, 392, 623
SmoI CTYRAG 3 cut(s) 369, 392, 623
SpeI ACTAGT 1 cut(s) 34
Sse9I AATT 5 cut(s) 29, 330, 557, 655, 927
SseBI AGGCCT 1 cut(s) 773
SsiI CCGC 1 cut(s) 791
SspI AATATT 2 cut(s) 601, 613
SspMI CTAG 3 cut(s) 35, 759, 1023
StuI AGGCCT 1 cut(s) 773
StyD4I CCNGG 1 cut(s) 525
StyI CCWWGG 1 cut(s) 1022
TaaI ACNGT 2 cut(s) 577, 1096
TaiI ACGT 2 cut(s) 720, 1203
TaqI TCGA 1 cut(s) 393
TaqII GACCGA 2 cut(s) 268, 640
TasI AATT 5 cut(s) 29, 330, 557, 655, 927
TatI WGTACW 1 cut(s) 247
TfiI GAWTC 5 cut(s) 56, 275, 306, 570, 644
Tru1I TTAA 4 cut(s) 285, 336, 920, 1061
Tru9I TTAA 4 cut(s) 285, 336, 920, 1061
TscAI CASTG 5 cut(s) 69, 316, 430, 586, 690
TseFI GTSAC 4 cut(s) 64, 577, 687, 1096
Tsp45I GTSAC 4 cut(s) 64, 577, 687, 1096
TspDTI ATGAA 5 cut(s) 109, 171, 782, 883, 1082
TspRI CASTG 5 cut(s) 69, 316, 430, 586, 690
Van91I CCANNNNNTGG 1 cut(s) 155
XagI CCTNNNNNAGG 1 cut(s) 1052
XhoI CTCGAG 1 cut(s) 392
XmaJI CCTAGG 1 cut(s) 1022
XmiI GTMKAC 3 cut(s) 517, 828, 1197
XspI CTAG 3 cut(s) 35, 759, 1023
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.