Rw0G000400
ERF Family

mTERF

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00010
OG0000263
Physical Location & Seq
Reverse (-)
18753 .. 20300
1548 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G000400.1

Sequence Viewer

Length: 1230 bp
ATGTTTGGTGTTTACTGTAAAAGATTGCAATTACTAGTTCCAACTTCAGTTACCCATTTTCATTGCTTTCAAAAGTTCCTTCCCTTTAGCAGATCATATTCATCTTTATTAGGATCTGATATAGATGATGATGATGATGATGATGATAAACCCCAAGGTCACTCTTTTACAGTTTCATACCTCATAAACTCATTTGGGTTTTCCCCAAAACTGGCTCTCTCTTTGTCCAATAAGCATAGGGTACGGTTTGATTCCCCAGAAAAACCAGACTCAGTTGTTAAGCTTCTCAAACACCATGGGTTCAATGGTACCCAGATATCCGAAATTGTTAAGAAACTACCAACCTTGCTTTTGTGCAATGCTGAGAAGACCCTTGAGCCCAAGCTCCAGTTTTTTGATTCTATTGGCCTTTCAGCCACCGCCCTTGCTTGGGTCGTCAGTTACAACCGACGCATTTTGGGTCAAAGTTTAGAGAGAAGTCTCCGACCGTGCTATGATATCATCAAAAGTCTACCTATCCCCGACAACATGGTGGCTGTTTTCTTGAAGAACTCGAACCGGGCATTTGGGGTCAAGATGCTTAGCAATCTTGTTCCCAATGTTTCAGTTCTTAGGGCAATTCAAGTGCCGGAATCCTGCATCTCCTTTTATGTTACCTATCATCCTCTTGTGCTGTCCCCTGAAACTAGCAAGTTTAAGGAAAGTGTAAACAAGATCATTAATCTCGGAATTCTGCCTCCGAGTTTTACTTTCATGAAGGCACTACAAGTCATCTCTCAGATGGATGCATCAAAGTGGAGACGAAAGACAGAGTTCTATAGGAAGTGCGGTTGGACTGAGGATGACTTTCTGTTGGCATTTAGAAAGAATCCCATGTTTATGAGCTTGTCAGAGGAGAAGTCTTCAAGTAAAATTGAGTTTCTTGTGAACAAAATGGGTTGGCAGCCTGCAGAAGTGGCTGACAGGCCTGATATTCTAACTCATAGTTTGGAGAAGTCTATCATACCTAGGTGTTCAGTTATTAGAGTTCTCCAATATAAGGGTTTGATGAAAAAGGGAGAACTTTCTCAAGCTACCATGCTGATAAACAGTAGGAAGCGCTTCTTGGATAGGTTTGTGACCAAATATCAGGATCAAGCACCTGAACTGTTGAGTATCTTTCAAGGGCAAATGTCTCTAGCAGAATTGGGTGTAGGATTTGAGGAAAGAGATGGAGTGAAACAATTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
mTERF

Protein Analysis

409

Amino Acids

46.6

Weight (kDa)

9.25

Isoelectric Point (pI)

48.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
mTERF PF02536 93 - 226 4.2e-18 mTERF
mTERF PF02536 222 - 369 2.3e-18 mTERF
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000263)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G21150 AT1G21150 AT1G21150
fragaria_vesca FvH4_4g17900 FvH4_6g26110 FvH4_6g33880 FvH4_6g33900 FvH4_6g34011 FvH4_6g34011 FvH4_6g34011 FvH4_6g34011 FvH4_6g34030 FvH4_6g34040 FvH4_6g34070 FvH4_6g34070 FvH4_7g12830
malus_domestica MD09G1189800.v1.1 MD09G1189900.v1.1 MD09G1190000.v1.1 MD14G1088800.v1.1 MD14G1088900.v1.1 MD17G1172900.v1.1
pyrus_communis pycom07g03460 pycom09g10650 pycom14g07860
rosa_chinensis RchiOBHm_Chr1g0351891 RchiOBHm_Chr1g0351901 RchiOBHm_Chr2g0143771 RchiOBHm_Chr2g0143861 RchiOBHm_Chr2g0143881 RchiOBHm_Chr2g0143941 RchiOBHm_Chr2g0143951 RchiOBHm_Chr2g0144081 RchiOBHm_Chr2g0144091 RchiOBHm_Chr2g0144211 RchiOBHm_Chr2g0144231 RchiOBHm_Chr2g0144241 RchiOBHm_Chr2g0144291 RchiOBHm_Chr2g0144301 RchiOBHm_Chr2g0144311 RchiOBHm_Chr2g0144331 RchiOBHm_Chr2g0144341 RchiOBHm_Chr4g0422021 RchiOBHm_Chr4g0422031
rosa_laevigata RLG00000007639 RLG00000020063 RLG00000020071 RLG00000020072 RLG00000020074
rosa_multiflora Rmu_co8214640.1_g000001 Rmu_co8471033.1_g000001 Rmu_sc0000789.1_g000002 Rmu_sc0001321.1_g000001 Rmu_sc0004340.1_g000001 Rmu_sc0004897.1_g000001 Rmu_sc0007105.1_g000005 Rmu_sc0009498.1_g000001 Rmu_sc0009498.1_g000002 Rmu_sc0019136.1_g000001 Rmu_sc0020327.1_g000002 Rmu_sc0020327.1_g000003 Rmu_sc0022905.1_g000001 Rmu_sc0032602.1_g000003 Rmu_sc0032602.1_g000004
rosa_roxburghii Rroxscaffold_2G00101380 Rroxscaffold_2G00101390 Rroxscaffold_2G00101400 Rroxscaffold_2G00101410 Rroxscaffold_2G00101480 Rroxscaffold_2G00101490 Rroxscaffold_4G00303470 Rroxscaffold_5G00364130 Rroxscaffold_5G00364150
rosa_rugosa Rorug01G0222600 Rorug02G0384700 Rorug02G0384800 Rorug02G0385800 Rorug02G0385900 Rorug02G0386000 Rorug02G0386000 Rorug02G0386100 Rorug04G0176700 Rorug04G0176800.1
rosa_samantha Rh1AG236500 Rh1AG236600 Rh1BG206900 Rh1CG221000 Rh1CG221100 Rh2BG444800 Rh2BG444900 Rh2BG446600 Rh2BG446700 Rh2BG447600 Rh2BG448100 Rh2BG448400 Rh2BG448500 Rh2BG448700 Rh2BG448800 Rh2CG423500 Rh2CG423600 Rh2CG424800 Rh2CG424900 Rh2CG425100 Rh2CG425200 Rh2DG455200 Rh2DG455300 Rh2DG456900 Rh2DG457000 Rh2DG457100 Rh2DG457600 Rh2DG457900 Rh2DG458000 Rh2DG458300 Rh2DG458400 Rh4AG236100 Rh4AG236200 Rh4BG239200 Rh4CG250900 Rh4CG251100
rosa_wichuraiana Rw0G000400 Rw0G015990 Rw0G017200 Rw1G020580 Rw2G033310 Rw2G035630 Rw2G035640 Rw2G035790 Rw2G035800 Rw2G035840 Rw2G036160 Rw4G019830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 308
AccB1I GGYRCC 1 cut(s) 308
AccI GTMKAC 1 cut(s) 511
AciI CCGC 2 cut(s) 420, 828
AclWI GGATC 2 cut(s) 121, 1140
AcsI RAATTY 1 cut(s) 729
AcuI CTGAAG 1 cut(s) 30
AfaI GTAC 2 cut(s) 243, 310
AfeI AGCGCT 1 cut(s) 1100
AfiI CCNNNNNNNGG 4 cut(s) 211, 429, 430, 1039
AgsI TTSAA 6 cut(s) 71, 304, 547, 623, 906, 1163
AhlI ACTAGT 1 cut(s) 34
AjuI GAANNNNNNNTTGG 2 cut(s) 1088, 1120
AluBI AGCT 4 cut(s) 283, 385, 885, 1073
AluI AGCT 4 cut(s) 283, 385, 885, 1073
Alw26I GTCTC 3 cut(s) 485, 793, 1179
AlwI GGATC 2 cut(s) 121, 1140
Aor51HI AGCGCT 1 cut(s) 1100
AoxI GGCC 2 cut(s) 406, 965
ApeKI GCWGC 1 cut(s) 943
ApoI RAATTY 1 cut(s) 729
AseI ATTAAT 1 cut(s) 720
Asp700I GAANNNNTTC 1 cut(s) 1100
Asp718I GGTACC 1 cut(s) 308
AspA2I CCTAGG 1 cut(s) 1007
AspLEI GCGC 1 cut(s) 1101
AsuC2I CCSGG 1 cut(s) 560
AvrII CCTAGG 1 cut(s) 1007
BanI GGYRCC 1 cut(s) 308
BanII GRGCYC 1 cut(s) 381
BbsI GAAGAC 2 cut(s) 374, 894
BbvI GCAGC 1 cut(s) 955
BccI CCATC 2 cut(s) 775, 1205
BcnI CCSGG 1 cut(s) 560
BcoDI GTCTC 3 cut(s) 485, 793, 1179
BcuI ACTAGT 1 cut(s) 34
BfaI CTAG 4 cut(s) 35, 687, 1008, 1178
BfmI CTRYAG 2 cut(s) 817, 948
BfoI RGCGCY 1 cut(s) 1102
BisI GCNGC 1 cut(s) 944
BlnI CCTAGG 1 cut(s) 1007
BlpI GCTNAGC 1 cut(s) 581
BlsI GCNGC 1 cut(s) 945
Bme1390I CCNGG 1 cut(s) 560
BmiI GGNNCC 1 cut(s) 310
BmrFI CCNGG 1 cut(s) 560
BmsI GCATC 4 cut(s) 567, 648, 775, 797
BpiI GAAGAC 2 cut(s) 374, 894
BpmI CTGGAG 1 cut(s) 371
Bpu1102I GCTNAGC 1 cut(s) 581
BpuEI CTTGAG 2 cut(s) 395, 1053
BpuMI CCSGG 1 cut(s) 560
BsaJI CCNNGG 3 cut(s) 154, 295, 1007
Bsc4I CCNNNNNNNGG 4 cut(s) 211, 429, 430, 1039
Bse1I ACTGG 2 cut(s) 216, 388
Bse3DI GCAATG 2 cut(s) 61, 364
BseDI CCNNGG 3 cut(s) 154, 295, 1007
BseGI GGATG 3 cut(s) 661, 790, 847
BseLI CCNNNNNNNGG 4 cut(s) 211, 429, 430, 1039
BseMI GCAATG 2 cut(s) 61, 364
BseMII CTCAG 4 cut(s) 285, 354, 791, 828
BseNI ACTGG 2 cut(s) 216, 388
BseRI GAGGAG 1 cut(s) 908
BseXI GCAGC 1 cut(s) 955
Bsh1285I CGRYCG 1 cut(s) 488
BshFI GGCC 2 cut(s) 408, 967
BshNI GGYRCC 1 cut(s) 308
BsiEI CGRYCG 1 cut(s) 488
BsiSI CCGG 2 cut(s) 559, 629
BslFI GGGAC 1 cut(s) 661
BslI CCNNNNNNNGG 4 cut(s) 211, 429, 430, 1039
BsmAI GTCTC 3 cut(s) 485, 793, 1179
BsmBI CGTCTC 1 cut(s) 793
BsmFI GGGAC 1 cut(s) 661
BsnI GGCC 2 cut(s) 408, 967
Bsp1286I GDGCHC 1 cut(s) 381
Bsp143I GATC 4 cut(s) 92, 113, 714, 1132
Bsp1720I GCTNAGC 1 cut(s) 581
Bsp19I CCATGG 1 cut(s) 295
BspACI CCGC 2 cut(s) 420, 828
BspANI GGCC 2 cut(s) 408, 967
BspCNI CTCAG 4 cut(s) 284, 355, 790, 829
BspHI TCATGA 1 cut(s) 753
BspLI GGNNCC 1 cut(s) 310
BspMAI CTGCAG 1 cut(s) 952
BspPI GGATC 2 cut(s) 121, 1140
BspT107I GGYRCC 1 cut(s) 308
BsrDI GCAATG 2 cut(s) 61, 364
BsrI ACTGG 2 cut(s) 216, 388
BssECI CCNNGG 3 cut(s) 154, 295, 1007
BssMI GATC 4 cut(s) 92, 113, 714, 1132
BssT1I CCWWGG 3 cut(s) 154, 295, 1007
Bst4CI ACNGT 6 cut(s) 17, 172, 246, 489, 1091, 1149
BstC8I GCNNGC 1 cut(s) 948
BstDEI CTNAG 6 cut(s) 271, 363, 581, 611, 777, 837
BstDSI CCRYGG 1 cut(s) 295
BstF5I GGATG 3 cut(s) 661, 790, 847
BstH2I RGCGCY 1 cut(s) 1102
BstHHI GCGC 1 cut(s) 1101
BstKTI GATC 4 cut(s) 95, 116, 717, 1135
BstMAI GTCTC 3 cut(s) 485, 793, 1179
BstMBI GATC 4 cut(s) 92, 113, 714, 1132
BstMCI CGRYCG 1 cut(s) 488
BstMWI GCNNNNNNNGC 1 cut(s) 956
BstSCI CCNGG 1 cut(s) 558
BstSFI CTRYAG 2 cut(s) 817, 948
BstV1I GCAGC 1 cut(s) 955
BstV2I GAAGAC 2 cut(s) 374, 894
BstX2I RGATCY 1 cut(s) 113
BstYI RGATCY 1 cut(s) 113
BsuRI GGCC 2 cut(s) 408, 967
BtgI CCRYGG 1 cut(s) 295
BtsCI GGATG 3 cut(s) 661, 790, 847
Cac8I GCNNGC 1 cut(s) 948
CciI TCATGA 1 cut(s) 753
CfoI GCGC 1 cut(s) 1101
CseI GACGC 1 cut(s) 459
Csp6I GTAC 2 cut(s) 242, 309
CspCI CAANNNNNGTGG 2 cut(s) 406, 441
CviAII CATG 5 cut(s) 296, 529, 754, 874, 1078
CviQI GTAC 2 cut(s) 242, 309
DdeI CTNAG 6 cut(s) 271, 363, 581, 611, 777, 837
DpnI GATC 4 cut(s) 94, 115, 716, 1134
DpnII GATC 4 cut(s) 92, 113, 714, 1132
Eco130I CCWWGG 3 cut(s) 154, 295, 1007
Eco147I AGGCCT 1 cut(s) 967
Eco24I GRGCYC 1 cut(s) 381
Eco32I GATATC 2 cut(s) 318, 499
Eco47III AGCGCT 1 cut(s) 1100
Eco57I CTGAAG 1 cut(s) 30
EcoRI GAATTC 1 cut(s) 729
EcoRV GATATC 2 cut(s) 318, 499
EcoT14I CCWWGG 3 cut(s) 154, 295, 1007
EcoT22I ATGCAT 1 cut(s) 790
EcoT38I GRGCYC 1 cut(s) 381
ErhI CCWWGG 3 cut(s) 154, 295, 1007
Esp3I CGTCTC 1 cut(s) 793
FaeI CATG 5 cut(s) 299, 532, 757, 877, 1081
FalI AAGNNNNNCTT 2 cut(s) 1088, 1120
FaqI GGGAC 1 cut(s) 661
FatI CATG 5 cut(s) 295, 528, 753, 873, 1077
FblI GTMKAC 1 cut(s) 511
Fnu4HI GCNGC 1 cut(s) 944
FokI GGATG 3 cut(s) 648, 797, 854
FriOI GRGCYC 1 cut(s) 381
Fsp4HI GCNGC 1 cut(s) 944
FspBI CTAG 4 cut(s) 35, 687, 1008, 1178
GlaI GCGC 1 cut(s) 1100
GluI GCNGC 1 cut(s) 944
GsuI CTGGAG 1 cut(s) 371
HaeII RGCGCY 1 cut(s) 1102
HaeIII GGCC 2 cut(s) 408, 967
HapII CCGG 2 cut(s) 559, 629
HgaI GACGC 1 cut(s) 459
HhaI GCGC 1 cut(s) 1101
Hin1II CATG 5 cut(s) 299, 532, 757, 877, 1081
Hin6I GCGC 1 cut(s) 1099
HinP1I GCGC 1 cut(s) 1099
HindIII AAGCTT 1 cut(s) 281
HinfI GANTC 5 cut(s) 251, 269, 398, 632, 868
HpaII CCGG 2 cut(s) 559, 629
Hpy166II GTNNAC 4 cut(s) 13, 512, 709, 928
Hpy188I TCNGA 7 cut(s) 118, 322, 485, 728, 741, 780, 892
Hpy188III TCNNGA 4 cut(s) 544, 574, 754, 1130
Hpy8I GTNNAC 4 cut(s) 13, 512, 709, 928
Hpy99I CGWCG 1 cut(s) 453
HpyAV CCTTC 2 cut(s) 89, 751
HpyCH4III ACNGT 6 cut(s) 17, 172, 246, 489, 1091, 1149
HpyCH4V TGCA 5 cut(s) 28, 357, 639, 788, 950
HpyF10VI GCNNNNNNNGC 1 cut(s) 956
HpyF3I CTNAG 6 cut(s) 271, 363, 581, 611, 777, 837
Hsp92II CATG 5 cut(s) 299, 532, 757, 877, 1081
HspAI GCGC 1 cut(s) 1099
KpnI GGTACC 1 cut(s) 312
Kzo9I GATC 4 cut(s) 92, 113, 714, 1132
LmnI GCTCC 1 cut(s) 390
Lsp1109I GCAGC 1 cut(s) 955
LweI GCATC 4 cut(s) 567, 648, 775, 797
MaeI CTAG 4 cut(s) 35, 687, 1008, 1178
MaeIII GTNAC 5 cut(s) 49, 158, 440, 652, 1117
MalI GATC 4 cut(s) 94, 115, 716, 1134
MboI GATC 4 cut(s) 92, 113, 714, 1132
MboII GAAGA 3 cut(s) 379, 559, 894
MfeI CAATTG 1 cut(s) 1223
MflI RGATCY 1 cut(s) 113
MhlI GDGCHC 1 cut(s) 381
MluCI AATT 7 cut(s) 29, 324, 618, 729, 912, 1184, 1223
MlyI GAGTC 1 cut(s) 263
MmeI TCCRAC 3 cut(s) 65, 508, 812
MnlI CCTC 6 cut(s) 191, 675, 747, 832, 886, 1195
Mph1103I ATGCAT 1 cut(s) 790
MroXI GAANNNNTTC 1 cut(s) 1100
MseI TTAA 4 cut(s) 279, 330, 696, 720
MslI CAYNNNNRTG 2 cut(s) 793, 878
MspI CCGG 2 cut(s) 559, 629
MspR9I CCNGG 1 cut(s) 560
MunI CAATTG 1 cut(s) 1223
MwoI GCNNNNNNNGC 1 cut(s) 956
NciI CCSGG 1 cut(s) 560
NcoI CCATGG 1 cut(s) 295
NdeII GATC 4 cut(s) 92, 113, 714, 1132
NlaIII CATG 5 cut(s) 299, 532, 757, 877, 1081
NlaIV GGNNCC 1 cut(s) 310
NmuCI GTSAC 2 cut(s) 158, 1117
NsiI ATGCAT 1 cut(s) 790
PagI TCATGA 1 cut(s) 753
PceI AGGCCT 1 cut(s) 967
PdmI GAANNNNTTC 1 cut(s) 1100
PfeI GAWTC 4 cut(s) 251, 398, 632, 868
PkrI GCNGC 1 cut(s) 945
PleI GAGTC 1 cut(s) 263
PpsI GAGTC 1 cut(s) 263
PshBI ATTAAT 1 cut(s) 720
PspN4I GGNNCC 1 cut(s) 310
PstI CTGCAG 1 cut(s) 952
PsuI RGATCY 1 cut(s) 113
RsaI GTAC 2 cut(s) 243, 310
RsaNI GTAC 2 cut(s) 242, 309
RseI CAYNNNNRTG 2 cut(s) 793, 878
SaqAI TTAA 4 cut(s) 279, 330, 696, 720
SatI GCNGC 1 cut(s) 944
Sau3AI GATC 4 cut(s) 92, 113, 714, 1132
SchI GAGTC 1 cut(s) 263
ScrFI CCNGG 1 cut(s) 560
SduI GDGCHC 1 cut(s) 381
SfaNI GCATC 4 cut(s) 567, 648, 775, 797
SfcI CTRYAG 2 cut(s) 817, 948
SmiMI CAYNNNNRTG 2 cut(s) 793, 878
SmlI CTYRAG 2 cut(s) 374, 1068
SmoI CTYRAG 2 cut(s) 374, 1068
SpeI ACTAGT 1 cut(s) 34
Sse9I AATT 7 cut(s) 29, 324, 618, 729, 912, 1184, 1223
SseBI AGGCCT 1 cut(s) 967
SsiI CCGC 2 cut(s) 420, 828
SspMI CTAG 4 cut(s) 35, 687, 1008, 1178
StuI AGGCCT 1 cut(s) 967
StyD4I CCNGG 1 cut(s) 558
StyI CCWWGG 3 cut(s) 154, 295, 1007
TaaI ACNGT 6 cut(s) 17, 172, 246, 489, 1091, 1149
TaqI TCGA 1 cut(s) 554
TasI AATT 7 cut(s) 29, 324, 618, 729, 912, 1184, 1223
TfiI GAWTC 4 cut(s) 251, 398, 632, 868
Tru1I TTAA 4 cut(s) 279, 330, 696, 720
Tru9I TTAA 4 cut(s) 279, 330, 696, 720
TseFI GTSAC 2 cut(s) 158, 1117
TseI GCWGC 1 cut(s) 943
Tsp45I GTSAC 2 cut(s) 158, 1117
TspDTI ATGAA 6 cut(s) 50, 90, 165, 742, 770, 1064
VspI ATTAAT 1 cut(s) 720
XapI RAATTY 1 cut(s) 729
XcmI CCANNNNNNNNNTGG 1 cut(s) 302
XmaJI CCTAGG 1 cut(s) 1007
XmiI GTMKAC 1 cut(s) 511
XmnI GAANNNNTTC 1 cut(s) 1100
XspI CTAG 4 cut(s) 35, 687, 1008, 1178
Zsp2I ATGCAT 1 cut(s) 790
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.