FvH4_6g26110
ERF Family

Mitochondrial transcription termination factor family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000263
Physical Location & Seq
Reverse (-)
19969222 .. 19971234
2013 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g26110.t1

Sequence Viewer

Length: 768 bp
ATGAGCTTAGAGAATAATATCAGACCTTGTTATGATATCATCAAGACTATAGGTACCCCTGATGGAAAGGTCCCTTGTTTCATTATGAAATCCCATAGGATGTTTAAGGCCAAAATACTGAGCAATGTTTCCCACAATGTTTCATTTCTGAGGTCACTAAAAGTGCCGGAATCCACACTCAATCTGTGTAGGCCTGAGACTCTGGTTACAACGTCAACCGATGCCGATGAGTTTAATGGAAATGTCAACAAGGTCATCAGCATGGGATTTTCACCTTCAAGCTTTGGGTTTTTGAAAGCACTGTATGTAATTTCTGTGATGGATGAAAAGTTGGCACAGAAGAAGGAGTTTTATAGAAAGTGTGGATGGACTGAAGATGATATATTGTTGGCATTTAGTAAGAATCCCATCTTTATAACCGTCTCTGAGAAGAACGTTTCAAGTAAAATGGATTTTCTTGTGAACGAAATTGGTTTGCAGCCGGCTGATGTGGCTAAATATCCCAGTATTCTAATTTATAGTTTGGAGAAGTGGATCATACCTAGGTGGTCAGTTATTAGAGTTCTGCTGTTGAAGGGCTTAATAAGGGAGGGACAATTTTCTTTAGTTGGCACCGCATTAATGGGAAGGAAAGACCACTTCTTGCATAGGTTTGTGGACAAGTATAAAGAGCAAGTACCTGAATTATTGAGCATCTTTCAAGGGAAAATTGGCCTTCCAGAACTGGGGTTAGGATTTGAGGAAAGAGATCGAGTGAAACAAATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
mTERF

Protein Analysis

256

Amino Acids

29.05

Weight (kDa)

9.16

Isoelectric Point (pI)

35.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
mTERF PF02536 1 - 201 1.3e-17 mTERF
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000263)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G21150 AT1G21150 AT1G21150
fragaria_vesca FvH4_4g17900 FvH4_6g26110 FvH4_6g33880 FvH4_6g33900 FvH4_6g34011 FvH4_6g34011 FvH4_6g34011 FvH4_6g34011 FvH4_6g34030 FvH4_6g34040 FvH4_6g34070 FvH4_6g34070 FvH4_7g12830
malus_domestica MD09G1189800.v1.1 MD09G1189900.v1.1 MD09G1190000.v1.1 MD14G1088800.v1.1 MD14G1088900.v1.1 MD17G1172900.v1.1
pyrus_communis pycom07g03460 pycom09g10650 pycom14g07860
rosa_chinensis RchiOBHm_Chr1g0351891 RchiOBHm_Chr1g0351901 RchiOBHm_Chr2g0143771 RchiOBHm_Chr2g0143861 RchiOBHm_Chr2g0143881 RchiOBHm_Chr2g0143941 RchiOBHm_Chr2g0143951 RchiOBHm_Chr2g0144081 RchiOBHm_Chr2g0144091 RchiOBHm_Chr2g0144211 RchiOBHm_Chr2g0144231 RchiOBHm_Chr2g0144241 RchiOBHm_Chr2g0144291 RchiOBHm_Chr2g0144301 RchiOBHm_Chr2g0144311 RchiOBHm_Chr2g0144331 RchiOBHm_Chr2g0144341 RchiOBHm_Chr4g0422021 RchiOBHm_Chr4g0422031
rosa_laevigata RLG00000007639 RLG00000020063 RLG00000020071 RLG00000020072 RLG00000020074
rosa_multiflora Rmu_co8214640.1_g000001 Rmu_co8471033.1_g000001 Rmu_sc0000789.1_g000002 Rmu_sc0001321.1_g000001 Rmu_sc0004340.1_g000001 Rmu_sc0004897.1_g000001 Rmu_sc0007105.1_g000005 Rmu_sc0009498.1_g000001 Rmu_sc0009498.1_g000002 Rmu_sc0019136.1_g000001 Rmu_sc0020327.1_g000002 Rmu_sc0020327.1_g000003 Rmu_sc0022905.1_g000001 Rmu_sc0032602.1_g000003 Rmu_sc0032602.1_g000004
rosa_roxburghii Rroxscaffold_2G00101380 Rroxscaffold_2G00101390 Rroxscaffold_2G00101400 Rroxscaffold_2G00101410 Rroxscaffold_2G00101480 Rroxscaffold_2G00101490 Rroxscaffold_4G00303470 Rroxscaffold_5G00364130 Rroxscaffold_5G00364150
rosa_rugosa Rorug01G0222600 Rorug02G0384700 Rorug02G0384800 Rorug02G0385800 Rorug02G0385900 Rorug02G0386000 Rorug02G0386000 Rorug02G0386100 Rorug04G0176700 Rorug04G0176800.1
rosa_samantha Rh1AG236500 Rh1AG236600 Rh1BG206900 Rh1CG221000 Rh1CG221100 Rh2BG444800 Rh2BG444900 Rh2BG446600 Rh2BG446700 Rh2BG447600 Rh2BG448100 Rh2BG448400 Rh2BG448500 Rh2BG448700 Rh2BG448800 Rh2CG423500 Rh2CG423600 Rh2CG424800 Rh2CG424900 Rh2CG425100 Rh2CG425200 Rh2DG455200 Rh2DG455300 Rh2DG456900 Rh2DG457000 Rh2DG457100 Rh2DG457600 Rh2DG457900 Rh2DG458000 Rh2DG458300 Rh2DG458400 Rh4AG236100 Rh4AG236200 Rh4BG239200 Rh4CG250900 Rh4CG251100
rosa_wichuraiana Rw0G000400 Rw0G015990 Rw0G017200 Rw1G020580 Rw2G033310 Rw2G035630 Rw2G035640 Rw2G035790 Rw2G035800 Rw2G035840 Rw2G036160 Rw4G019830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 416
Acc65I GGTACC 1 cut(s) 53
AccB1I GGYRCC 2 cut(s) 53, 611
AciI CCGC 1 cut(s) 615
AclI AACGTT 1 cut(s) 435
AclWI GGATC 1 cut(s) 542
AcuI CTGAAG 1 cut(s) 393
AfaI GTAC 2 cut(s) 55, 678
AfiI CCNNNNNNNGG 1 cut(s) 725
AgsI TTSAA 5 cut(s) 279, 295, 441, 574, 701
AluBI AGCT 2 cut(s) 6, 282
AluI AGCT 2 cut(s) 6, 282
Alw26I GTCTC 2 cut(s) 191, 427
AlwI GGATC 1 cut(s) 542
AoxI GGCC 3 cut(s) 108, 191, 712
ApeKI GCWGC 1 cut(s) 478
AseI ATTAAT 1 cut(s) 620
Asp718I GGTACC 1 cut(s) 53
AspA2I CCTAGG 1 cut(s) 542
AspS9I GGNCC 1 cut(s) 70
AsuHPI GGTGA 1 cut(s) 264
AvaII GGWCC 1 cut(s) 70
AvrII CCTAGG 1 cut(s) 542
BanI GGYRCC 2 cut(s) 53, 611
BbvI GCAGC 1 cut(s) 490
BccI CCATC 4 cut(s) 56, 313, 360, 416
BcoDI GTCTC 2 cut(s) 191, 427
BfaI CTAG 1 cut(s) 543
BfmI CTRYAG 1 cut(s) 48
BisI GCNGC 1 cut(s) 479
BlnI CCTAGG 1 cut(s) 542
BlsI GCNGC 1 cut(s) 480
Bme18I GGWCC 1 cut(s) 70
BmgT120I GGNCC 1 cut(s) 70
BmiI GGNNCC 3 cut(s) 55, 72, 613
BmrI ACTGGG 2 cut(s) 498, 734
BmsI GCATC 2 cut(s) 211, 702
BmuI ACTGGG 2 cut(s) 498, 734
BsaJI CCNNGG 1 cut(s) 542
Bsc4I CCNNNNNNNGG 1 cut(s) 725
Bse118I RCCGGY 1 cut(s) 481
Bse1I ACTGG 2 cut(s) 504, 729
Bse3DI GCAATG 1 cut(s) 130
BseDI CCNNGG 1 cut(s) 542
BseGI GGATG 3 cut(s) 105, 328, 371
BseLI CCNNNNNNNGG 1 cut(s) 725
BseMI GCAATG 1 cut(s) 130
BseMII CTCAG 4 cut(s) 110, 140, 186, 417
BseNI ACTGG 2 cut(s) 504, 729
BseXI GCAGC 1 cut(s) 490
BshFI GGCC 3 cut(s) 110, 193, 714
BshNI GGYRCC 2 cut(s) 53, 611
BsiSI CCGG 2 cut(s) 167, 482
BslFI GGGAC 2 cut(s) 56, 606
BslI CCNNNNNNNGG 1 cut(s) 725
BsmAI GTCTC 2 cut(s) 191, 427
BsmBI CGTCTC 1 cut(s) 427
BsmFI GGGAC 2 cut(s) 56, 606
BsnI GGCC 3 cut(s) 110, 193, 714
Bsp143I GATC 2 cut(s) 534, 748
BspACI CCGC 1 cut(s) 615
BspANI GGCC 3 cut(s) 110, 193, 714
BspCNI CTCAG 4 cut(s) 111, 141, 187, 418
BspLI GGNNCC 3 cut(s) 55, 72, 613
BspPI GGATC 1 cut(s) 542
BspT107I GGYRCC 2 cut(s) 53, 611
BsrDI GCAATG 1 cut(s) 130
BsrFI RCCGGY 1 cut(s) 481
BsrI ACTGG 2 cut(s) 504, 729
BssAI RCCGGY 1 cut(s) 481
BssECI CCNNGG 1 cut(s) 542
BssMI GATC 2 cut(s) 534, 748
BssT1I CCWWGG 1 cut(s) 542
Bst4CI ACNGT 2 cut(s) 303, 421
BstC8I GCNNGC 1 cut(s) 483
BstDEI CTNAG 5 cut(s) 7, 119, 149, 195, 426
BstF5I GGATG 3 cut(s) 105, 328, 371
BstKTI GATC 2 cut(s) 537, 751
BstMAI GTCTC 2 cut(s) 191, 427
BstMBI GATC 2 cut(s) 534, 748
BstMWI GCNNNNNNNGC 1 cut(s) 491
BstSFI CTRYAG 1 cut(s) 48
BstV1I GCAGC 1 cut(s) 490
BsuRI GGCC 3 cut(s) 110, 193, 714
BtsCI GGATG 3 cut(s) 105, 328, 371
BtsIMutI CAGTG 1 cut(s) 299
Cac8I GCNNGC 1 cut(s) 483
Cfr10I RCCGGY 1 cut(s) 481
Cfr13I GGNCC 1 cut(s) 70
Csp6I GTAC 2 cut(s) 54, 677
CviAII CATG 1 cut(s) 262
CviJI RGCY 9 cut(s) 6, 110, 193, 282, 481, 485, 494, 579, 714
CviKI_1 RGCY 9 cut(s) 6, 110, 193, 282, 481, 485, 494, 579, 714
CviQI GTAC 2 cut(s) 54, 677
DdeI CTNAG 5 cut(s) 7, 119, 149, 195, 426
DpnI GATC 2 cut(s) 536, 750
DpnII GATC 2 cut(s) 534, 748
Eco130I CCWWGG 1 cut(s) 542
Eco147I AGGCCT 1 cut(s) 193
Eco32I GATATC 1 cut(s) 37
Eco47I GGWCC 1 cut(s) 70
Eco57I CTGAAG 1 cut(s) 393
EcoO109I RGGNCCY 1 cut(s) 70
EcoRV GATATC 1 cut(s) 37
EcoT14I CCWWGG 1 cut(s) 542
ErhI CCWWGG 1 cut(s) 542
Esp3I CGTCTC 1 cut(s) 427
FaeI CATG 1 cut(s) 265
FaqI GGGAC 2 cut(s) 56, 606
FatI CATG 1 cut(s) 261
Fnu4HI GCNGC 1 cut(s) 479
FokI GGATG 3 cut(s) 112, 335, 378
Fsp4HI GCNGC 1 cut(s) 479
FspBI CTAG 1 cut(s) 543
GluI GCNGC 1 cut(s) 479
HaeIII GGCC 3 cut(s) 110, 193, 714
HapII CCGG 2 cut(s) 167, 482
Hin1II CATG 1 cut(s) 265
HincII GTYRAC 2 cut(s) 216, 247
HindII GTYRAC 2 cut(s) 216, 247
HindIII AAGCTT 1 cut(s) 280
HinfI GANTC 3 cut(s) 170, 199, 403
HpaII CCGG 2 cut(s) 167, 482
HphI GGTGA 1 cut(s) 264
Hpy166II GTNNAC 4 cut(s) 216, 247, 463, 658
Hpy188I TCNGA 3 cut(s) 23, 150, 427
Hpy188III TCNNGA 2 cut(s) 43, 719
Hpy8I GTNNAC 4 cut(s) 216, 247, 463, 658
HpyAV CCTTC 5 cut(s) 285, 337, 568, 621, 725
HpyCH4III ACNGT 2 cut(s) 303, 421
HpyCH4IV ACGT 2 cut(s) 212, 435
HpyCH4V TGCA 2 cut(s) 478, 646
HpyF10VI GCNNNNNNNGC 1 cut(s) 491
HpyF3I CTNAG 5 cut(s) 7, 119, 149, 195, 426
HpySE526I ACGT 2 cut(s) 212, 435
Hsp92II CATG 1 cut(s) 265
KpnI GGTACC 1 cut(s) 57
KroI GCCGGC 1 cut(s) 481
KroNI GCCGGC 1 cut(s) 483
Kzo9I GATC 2 cut(s) 534, 748
LpnPI CCDG 9 cut(s) 72, 180, 188, 207, 495, 517, 693, 710, 732
Lsp1109I GCAGC 1 cut(s) 490
LweI GCATC 2 cut(s) 211, 702
MaeI CTAG 1 cut(s) 543
MaeII ACGT 2 cut(s) 212, 435
MaeIII GTNAC 2 cut(s) 153, 205
MalI GATC 2 cut(s) 536, 750
MboI GATC 2 cut(s) 534, 748
MboII GAAGA 3 cut(s) 352, 386, 442
MluCI AATT 6 cut(s) 309, 468, 513, 596, 683, 708
MlyI GAGTC 1 cut(s) 193
MnlI CCTC 3 cut(s) 144, 583, 733
MroNI GCCGGC 1 cut(s) 481
MseI TTAA 4 cut(s) 105, 234, 581, 620
MslI CAYNNNNRTG 1 cut(s) 260
MspI CCGG 2 cut(s) 167, 482
MwoI GCNNNNNNNGC 1 cut(s) 491
NaeI GCCGGC 1 cut(s) 483
NdeII GATC 2 cut(s) 534, 748
NgoMIV GCCGGC 1 cut(s) 481
NlaIII CATG 1 cut(s) 265
NlaIV GGNNCC 3 cut(s) 55, 72, 613
NmuCI GTSAC 1 cut(s) 153
PceI AGGCCT 1 cut(s) 193
PdiI GCCGGC 1 cut(s) 483
PfeI GAWTC 2 cut(s) 170, 403
PkrI GCNGC 1 cut(s) 480
PleI GAGTC 1 cut(s) 193
PpsI GAGTC 1 cut(s) 193
PpuMI RGGWCCY 1 cut(s) 70
PshBI ATTAAT 1 cut(s) 620
PsiI TTATAA 1 cut(s) 416
Psp1406I AACGTT 1 cut(s) 435
Psp5II RGGWCCY 1 cut(s) 70
PspN4I GGNNCC 3 cut(s) 55, 72, 613
PspPI GGNCC 1 cut(s) 70
PspPPI RGGWCCY 1 cut(s) 70
RsaI GTAC 2 cut(s) 55, 678
RsaNI GTAC 2 cut(s) 54, 677
RseI CAYNNNNRTG 1 cut(s) 260
SaqAI TTAA 4 cut(s) 105, 234, 581, 620
SatI GCNGC 1 cut(s) 479
Sau3AI GATC 2 cut(s) 534, 748
Sau96I GGNCC 1 cut(s) 70
SchI GAGTC 1 cut(s) 193
SfaNI GCATC 2 cut(s) 211, 702
SfcI CTRYAG 1 cut(s) 48
SinI GGWCC 1 cut(s) 70
SmiMI CAYNNNNRTG 1 cut(s) 260
Sse9I AATT 6 cut(s) 309, 468, 513, 596, 683, 708
SseBI AGGCCT 1 cut(s) 193
SsiI CCGC 1 cut(s) 615
SspMI CTAG 1 cut(s) 543
StuI AGGCCT 1 cut(s) 193
StyI CCWWGG 1 cut(s) 542
TaaI ACNGT 2 cut(s) 303, 421
TaiI ACGT 2 cut(s) 215, 438
TaqI TCGA 1 cut(s) 751
TasI AATT 6 cut(s) 309, 468, 513, 596, 683, 708
TfiI GAWTC 2 cut(s) 170, 403
Tru1I TTAA 4 cut(s) 105, 234, 581, 620
Tru9I TTAA 4 cut(s) 105, 234, 581, 620
TscAI CASTG 1 cut(s) 306
TseFI GTSAC 1 cut(s) 153
TseI GCWGC 1 cut(s) 478
Tsp45I GTSAC 1 cut(s) 153
TspDTI ATGAA 4 cut(s) 70, 101, 132, 339
TspRI CASTG 1 cut(s) 306
VpaK11BI GGWCC 1 cut(s) 70
VspI ATTAAT 1 cut(s) 620
XmaJI CCTAGG 1 cut(s) 542
XspI CTAG 1 cut(s) 543
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.