Rh2BG448400
ERF Family

mTERF

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0000263
Physical Location & Seq
Forward (+)
63278718 .. 63321620
42903 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG448400.1

Sequence Viewer

Length: 1209 bp
ATGACAACATACAGAAGTGGAAATTTGATGCCCAGAAGACCTACCCAGATTGACAAGGCAACTGATTGGGTTCTGTCACTACAAGCTTACCCAAAAGACAACGACCAAGTTAACAATGGTGCTGAAATTGATGAAAAAGGTCGCTCTTTTACAGTTTCATACTTTGTGAACTCATTTGGGTTCTCCCCAGAACTTGCTCTTTTTTTGTCCAAGAAACATAAGATACAGTTTGAATCCCGAGAAAAACCAGACTCAGTTATTAAGCTTATGAAACACTATGGACTCAATGGTACCCATGTCTCTGAAATCGCTAGGAAACGCCCACACCTGTTTTTATTCAATGCTGAGAAGACCCTTTTGCCCAAACTCGAGTTTTTTTGTTCTATTGGCATTTCAGGCACTGTCCTTGCTAGGCTCCTTTGTAACAACCCAAGAATCTTGGCATTAAGCTTAGAGAGAAGTCTCAGACCTTGTTATGATCTCACCAAAACTCTACGTATCCCCGACGAAAAGCTCCGTTATTTTTTTGGTGACTTCAGACGGAATAGTTTGGAAAGACTCTGCATTGTTGCTCGAAATATTCCGGTGCTGACAGCACATGATGTGCCACAATCCTCATTTCCTCTGTGGGTGCCCTTTTATTTTAGGGCACTATCCTTTGACTCTGAGAAGGTTAAGACGAATCTTCACAAGGTCATTAGCATGGGATTCGACCCTTCATCTGCCACATTCATGAAAGCACTGTATGTGATATCAGTGACGGATACATCGAAATGGGAACAGAAGATGGAATTTTATAGCAAGTGGGGTTGGACTGAAGATGATGTGTTGTTGGCATTTAGAAGGAGTCCCTTGTTTATGTCCTTCAGTGAGAAGATTATTTCCAGTAAAATGGATTTTTATGTGAATACATTGGGTTGCCAGCCCTCAGATGTGGCTGGATGTCCAGATGTTCTAACTTATAGTTTGGAGAAGCGAATCATACCTAGGTGTTCAGTTATCAGACTTCTCCAGTTAGAGGGCTTAATCGCAAAGGAAGATGCATCTATAATTACCATTCTGCAGAAAAGTGAGAAGTGGTTCTTGGAAAGGTTTGTGATCAAATATCAAGAGCAAGTACCAGAATTGCTGACATCTTACAAGGAAAAAATCAGTCTTGCAAAGTTTGGCTTAGGATTAGATGAAAGAGGTGGAGTGAAACAAGTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
mTERF

Protein Analysis

402

Amino Acids

46.29

Weight (kDa)

9.23

Isoelectric Point (pI)

47.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
mTERF PF02536 87 - 167 6.2e-10 mTERF
mTERF PF02536 218 - 361 1.7e-17 mTERF
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000263)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G21150 AT1G21150 AT1G21150
fragaria_vesca FvH4_4g17900 FvH4_6g26110 FvH4_6g33880 FvH4_6g33900 FvH4_6g34011 FvH4_6g34011 FvH4_6g34011 FvH4_6g34011 FvH4_6g34030 FvH4_6g34040 FvH4_6g34070 FvH4_6g34070 FvH4_7g12830
malus_domestica MD09G1189800.v1.1 MD09G1189900.v1.1 MD09G1190000.v1.1 MD14G1088800.v1.1 MD14G1088900.v1.1 MD17G1172900.v1.1
pyrus_communis pycom07g03460 pycom09g10650 pycom14g07860
rosa_chinensis RchiOBHm_Chr1g0351891 RchiOBHm_Chr1g0351901 RchiOBHm_Chr2g0143771 RchiOBHm_Chr2g0143861 RchiOBHm_Chr2g0143881 RchiOBHm_Chr2g0143941 RchiOBHm_Chr2g0143951 RchiOBHm_Chr2g0144081 RchiOBHm_Chr2g0144091 RchiOBHm_Chr2g0144211 RchiOBHm_Chr2g0144231 RchiOBHm_Chr2g0144241 RchiOBHm_Chr2g0144291 RchiOBHm_Chr2g0144301 RchiOBHm_Chr2g0144311 RchiOBHm_Chr2g0144331 RchiOBHm_Chr2g0144341 RchiOBHm_Chr4g0422021 RchiOBHm_Chr4g0422031
rosa_laevigata RLG00000007639 RLG00000020063 RLG00000020071 RLG00000020072 RLG00000020074
rosa_multiflora Rmu_co8214640.1_g000001 Rmu_co8471033.1_g000001 Rmu_sc0000789.1_g000002 Rmu_sc0001321.1_g000001 Rmu_sc0004340.1_g000001 Rmu_sc0004897.1_g000001 Rmu_sc0007105.1_g000005 Rmu_sc0009498.1_g000001 Rmu_sc0009498.1_g000002 Rmu_sc0019136.1_g000001 Rmu_sc0020327.1_g000002 Rmu_sc0020327.1_g000003 Rmu_sc0022905.1_g000001 Rmu_sc0032602.1_g000003 Rmu_sc0032602.1_g000004
rosa_roxburghii Rroxscaffold_2G00101380 Rroxscaffold_2G00101390 Rroxscaffold_2G00101400 Rroxscaffold_2G00101410 Rroxscaffold_2G00101480 Rroxscaffold_2G00101490 Rroxscaffold_4G00303470 Rroxscaffold_5G00364130 Rroxscaffold_5G00364150
rosa_rugosa Rorug01G0222600 Rorug02G0384700 Rorug02G0384800 Rorug02G0385800 Rorug02G0385900 Rorug02G0386000 Rorug02G0386000 Rorug02G0386100 Rorug04G0176700 Rorug04G0176800.1
rosa_samantha Rh1AG236500 Rh1AG236600 Rh1BG206900 Rh1CG221000 Rh1CG221100 Rh2BG444800 Rh2BG444900 Rh2BG446600 Rh2BG446700 Rh2BG447600 Rh2BG448100 Rh2BG448400 Rh2BG448500 Rh2BG448700 Rh2BG448800 Rh2CG423500 Rh2CG423600 Rh2CG424800 Rh2CG424900 Rh2CG425100 Rh2CG425200 Rh2DG455200 Rh2DG455300 Rh2DG456900 Rh2DG457000 Rh2DG457100 Rh2DG457600 Rh2DG457900 Rh2DG458000 Rh2DG458300 Rh2DG458400 Rh4AG236100 Rh4AG236200 Rh4BG239200 Rh4CG250900 Rh4CG251100
rosa_wichuraiana Rw0G000400 Rw0G015990 Rw0G017200 Rw1G020580 Rw2G033310 Rw2G035630 Rw2G035640 Rw2G035790 Rw2G035800 Rw2G035840 Rw2G036160 Rw4G019830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 290
AccB1I GGYRCC 2 cut(s) 290, 631
AcsI RAATTY 2 cut(s) 22, 791
AcuI CTGAAG 3 cut(s) 520, 837, 850
AfaI GTAC 2 cut(s) 292, 1119
AfiI CCNNNNNNNGG 1 cut(s) 1018
AgsI TTSAA 2 cut(s) 233, 340
AjuI GAANNNNNNNTTGG 2 cut(s) 1067, 1099
AluBI AGCT 4 cut(s) 86, 265, 450, 514
AluI AGCT 4 cut(s) 86, 265, 450, 514
Alw26I GTCTC 2 cut(s) 304, 467
AlwNI CAGNNNCTG 1 cut(s) 401
Ama87I CYCGRG 2 cut(s) 237, 368
ApoI RAATTY 2 cut(s) 22, 791
Asp700I GAANNNNTTC 1 cut(s) 1079
Asp718I GGTACC 1 cut(s) 290
AspA2I CCTAGG 1 cut(s) 986
AsuHPI GGTGA 2 cut(s) 475, 542
AvaI CYCGRG 2 cut(s) 237, 368
AvrII CCTAGG 1 cut(s) 986
BaeGI GKGCMC 2 cut(s) 636, 652
BaeI ACNNNNGTAYC 2 cut(s) 282, 315
BanI GGYRCC 2 cut(s) 290, 631
BbsI GAAGAC 2 cut(s) 43, 356
BccI CCATC 1 cut(s) 781
BcgI CGANNNNNNTGC 2 cut(s) 691, 725
BciVI GTATCC 2 cut(s) 509, 757
BclI TGATCA 1 cut(s) 1098
BcoDI GTCTC 2 cut(s) 304, 467
BfaI CTAG 4 cut(s) 312, 411, 987, 1207
BfmI CTRYAG 1 cut(s) 1061
BfuI GTATCC 2 cut(s) 509, 757
BlnI CCTAGG 1 cut(s) 986
BmeT110I CYCGRG 2 cut(s) 237, 368
BmiI GGNNCC 3 cut(s) 292, 416, 633
BmsI GCATC 3 cut(s) 18, 1030, 1052
BpiI GAAGAC 2 cut(s) 43, 356
BpmI CTGGAG 1 cut(s) 995
Bpu10I CCTNAGC 1 cut(s) 1171
BsaAI YACGTR 1 cut(s) 497
BsaJI CCNNGG 1 cut(s) 986
BsaWI WCCGGW 1 cut(s) 583
Bsc4I CCNNNNNNNGG 1 cut(s) 1018
Bse1I ACTGG 2 cut(s) 885, 1012
BseDI CCNNGG 1 cut(s) 986
BseGI GGATG 1 cut(s) 947
BseLI CCNNNNNNNGG 1 cut(s) 1018
BseMII CTCAG 5 cut(s) 267, 336, 478, 657, 942
BseNI ACTGG 2 cut(s) 885, 1012
BseSI GKGCMC 2 cut(s) 636, 652
BshNI GGYRCC 2 cut(s) 290, 631
BsiHKCI CYCGRG 2 cut(s) 237, 368
BsiSI CCGG 1 cut(s) 584
BslFI GGGAC 1 cut(s) 834
BslI CCNNNNNNNGG 1 cut(s) 1018
BsmAI GTCTC 2 cut(s) 304, 467
BsmFI GGGAC 1 cut(s) 834
BsoBI CYCGRG 2 cut(s) 237, 368
Bsp1286I GDGCHC 2 cut(s) 636, 652
Bsp143I GATC 2 cut(s) 478, 1098
BspCNI CTCAG 5 cut(s) 266, 337, 477, 658, 941
BspHI TCATGA 1 cut(s) 732
BspLI GGNNCC 3 cut(s) 292, 416, 633
BspMAI CTGCAG 1 cut(s) 1065
BspT107I GGYRCC 2 cut(s) 290, 631
BsrI ACTGG 2 cut(s) 885, 1012
BssECI CCNNGG 1 cut(s) 986
BssMI GATC 2 cut(s) 478, 1098
BssT1I CCWWGG 1 cut(s) 986
Bst4CI ACNGT 4 cut(s) 154, 228, 403, 744
BstBAI YACGTR 1 cut(s) 497
BstC8I GCNNGC 1 cut(s) 923
BstDEI CTNAG 7 cut(s) 253, 345, 451, 464, 666, 928, 1171
BstF5I GGATG 1 cut(s) 947
BstKTI GATC 2 cut(s) 481, 1101
BstMAI GTCTC 2 cut(s) 304, 467
BstMBI GATC 2 cut(s) 478, 1098
BstMWI GCNNNNNNNGC 1 cut(s) 396
BstSFI CTRYAG 1 cut(s) 1061
BstSLI GKGCMC 2 cut(s) 636, 652
BstSNI TACGTA 1 cut(s) 497
BstV2I GAAGAC 2 cut(s) 43, 356
BstXI CCANNNNNNTGG 1 cut(s) 892
BsuI GTATCC 2 cut(s) 509, 757
BtsCI GGATG 1 cut(s) 947
BtsIMutI CAGTG 4 cut(s) 399, 740, 762, 874
Cac8I GCNNGC 1 cut(s) 923
CaiI CAGNNNCTG 1 cut(s) 401
CciI TCATGA 1 cut(s) 732
Csp6I GTAC 2 cut(s) 291, 1118
CviAII CATG 4 cut(s) 296, 599, 703, 733
CviJI RGCY 9 cut(s) 86, 265, 415, 450, 514, 925, 938, 1023, 1170
CviKI_1 RGCY 9 cut(s) 86, 265, 415, 450, 514, 925, 938, 1023, 1170
CviQI GTAC 2 cut(s) 291, 1118
DdeI CTNAG 7 cut(s) 253, 345, 451, 464, 666, 928, 1171
DpnI GATC 2 cut(s) 480, 1100
DpnII GATC 2 cut(s) 478, 1098
Eco105I TACGTA 1 cut(s) 497
Eco130I CCWWGG 1 cut(s) 986
Eco32I GATATC 1 cut(s) 753
Eco57I CTGAAG 3 cut(s) 520, 837, 850
Eco88I CYCGRG 2 cut(s) 237, 368
EcoRV GATATC 1 cut(s) 753
EcoT14I CCWWGG 1 cut(s) 986
EcoT22I ATGCAT 1 cut(s) 1045
ErhI CCWWGG 1 cut(s) 986
FaeI CATG 4 cut(s) 299, 602, 706, 736
FalI AAGNNNNNCTT 4 cut(s) 1067, 1099, 1154, 1186
FaqI GGGAC 1 cut(s) 834
FatI CATG 4 cut(s) 295, 598, 702, 732
FbaI TGATCA 1 cut(s) 1098
FokI GGATG 1 cut(s) 954
FspBI CTAG 4 cut(s) 312, 411, 987, 1207
GsuI CTGGAG 1 cut(s) 995
HapII CCGG 1 cut(s) 584
Hin1II CATG 4 cut(s) 299, 602, 706, 736
HincII GTYRAC 1 cut(s) 112
HindII GTYRAC 1 cut(s) 112
HindIII AAGCTT 3 cut(s) 84, 263, 448
HpaI GTTAAC 1 cut(s) 112
HpaII CCGG 1 cut(s) 584
HphI GGTGA 2 cut(s) 475, 542
Hpy166II GTNNAC 2 cut(s) 112, 169
Hpy188I TCNGA 6 cut(s) 304, 467, 539, 667, 931, 1004
Hpy188III TCNNGA 4 cut(s) 237, 733, 947, 1109
Hpy8I GTNNAC 2 cut(s) 112, 169
Hpy99I CGWCG 1 cut(s) 509
HpyAV CCTTC 4 cut(s) 664, 726, 837, 874
HpyCH4III ACNGT 4 cut(s) 154, 228, 403, 744
HpyCH4IV ACGT 1 cut(s) 496
HpyCH4V TGCA 4 cut(s) 564, 1043, 1063, 1160
HpyF10VI GCNNNNNNNGC 1 cut(s) 396
HpyF3I CTNAG 7 cut(s) 253, 345, 451, 464, 666, 928, 1171
HpySE526I ACGT 1 cut(s) 496
Hsp92II CATG 4 cut(s) 299, 602, 706, 736
KpnI GGTACC 1 cut(s) 294
Ksp22I TGATCA 1 cut(s) 1098
KspAI GTTAAC 1 cut(s) 112
Kzo9I GATC 2 cut(s) 478, 1098
LmnI GCTCC 2 cut(s) 420, 519
LweI GCATC 3 cut(s) 18, 1030, 1052
MaeI CTAG 4 cut(s) 312, 411, 987, 1207
MaeII ACGT 1 cut(s) 496
MaeIII GTNAC 4 cut(s) 75, 422, 530, 757
MalI GATC 2 cut(s) 480, 1100
MboI GATC 2 cut(s) 478, 1098
MboII GAAGA 7 cut(s) 48, 361, 677, 796, 830, 886, 1049
MhlI GDGCHC 2 cut(s) 636, 652
MluCI AATT 5 cut(s) 22, 126, 791, 1050, 1124
MlyI GAGTC 5 cut(s) 245, 276, 552, 656, 856
MmeI TCCRAC 1 cut(s) 791
MnlI CCTC 5 cut(s) 625, 633, 937, 1012, 1181
Mph1103I ATGCAT 1 cut(s) 1045
MroXI GAANNNNTTC 1 cut(s) 1079
MseI TTAA 5 cut(s) 111, 261, 446, 675, 1025
MslI CAYNNNNRTG 3 cut(s) 701, 731, 772
MspI CCGG 1 cut(s) 584
MwoI GCNNNNNNNGC 1 cut(s) 396
NdeII GATC 2 cut(s) 478, 1098
NlaIII CATG 4 cut(s) 299, 602, 706, 736
NlaIV GGNNCC 3 cut(s) 292, 416, 633
NmuCI GTSAC 3 cut(s) 75, 530, 757
NsiI ATGCAT 1 cut(s) 1045
PaeR7I CTCGAG 1 cut(s) 368
PagI TCATGA 1 cut(s) 732
PcsI WCGNNNNNNNCGW 1 cut(s) 767
PdmI GAANNNNTTC 1 cut(s) 1079
PfeI GAWTC 5 cut(s) 233, 435, 682, 708, 978
PleI GAGTC 5 cut(s) 245, 276, 552, 656, 855
PpsI GAGTC 5 cut(s) 245, 276, 552, 656, 855
Ppu21I YACGTR 1 cut(s) 497
PspN4I GGNNCC 3 cut(s) 292, 416, 633
PspXI VCTCGAGB 1 cut(s) 368
PstI CTGCAG 1 cut(s) 1065
PstNI CAGNNNCTG 1 cut(s) 401
RsaI GTAC 2 cut(s) 292, 1119
RsaNI GTAC 2 cut(s) 291, 1118
RseI CAYNNNNRTG 3 cut(s) 701, 731, 772
SaqAI TTAA 5 cut(s) 111, 261, 446, 675, 1025
Sau3AI GATC 2 cut(s) 478, 1098
SchI GAGTC 5 cut(s) 245, 276, 552, 656, 856
SduI GDGCHC 2 cut(s) 636, 652
SfaNI GCATC 3 cut(s) 18, 1030, 1052
SfcI CTRYAG 1 cut(s) 1061
Sfr274I CTCGAG 1 cut(s) 368
SlaI CTCGAG 1 cut(s) 368
SmiMI CAYNNNNRTG 3 cut(s) 701, 731, 772
SmlI CTYRAG 1 cut(s) 368
SmoI CTYRAG 1 cut(s) 368
SnaBI TACGTA 1 cut(s) 497
Sse9I AATT 5 cut(s) 22, 126, 791, 1050, 1124
SspI AATATT 1 cut(s) 580
SspMI CTAG 4 cut(s) 312, 411, 987, 1207
StyI CCWWGG 1 cut(s) 986
TaaI ACNGT 4 cut(s) 154, 228, 403, 744
TaiI ACGT 1 cut(s) 499
TaqI TCGA 4 cut(s) 369, 574, 711, 770
TasI AATT 5 cut(s) 22, 126, 791, 1050, 1124
TfiI GAWTC 5 cut(s) 233, 435, 682, 708, 978
Tru1I TTAA 5 cut(s) 111, 261, 446, 675, 1025
Tru9I TTAA 5 cut(s) 111, 261, 446, 675, 1025
TscAI CASTG 4 cut(s) 406, 747, 762, 874
TseFI GTSAC 3 cut(s) 75, 530, 757
Tsp45I GTSAC 3 cut(s) 75, 530, 757
TspDTI ATGAA 7 cut(s) 147, 147, 284, 708, 721, 749, 1197
TspGWI ACGGA 3 cut(s) 506, 556, 776
TspRI CASTG 4 cut(s) 406, 747, 762, 874
XapI RAATTY 2 cut(s) 22, 791
XcmI CCANNNNNNNNNTGG 1 cut(s) 113
XhoI CTCGAG 1 cut(s) 368
XmaJI CCTAGG 1 cut(s) 986
XmnI GAANNNNTTC 1 cut(s) 1079
XspI CTAG 4 cut(s) 312, 411, 987, 1207
Zsp2I ATGCAT 1 cut(s) 1045
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.