Rh1AG236500
ERF Family

mTERF

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0000263
Physical Location & Seq
Reverse (-)
44640355 .. 44640870
516 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG236500.1

Sequence Viewer

Length: 516 bp
ATGAGTATGGGAATCGAACCTTCATCATCTGCGACGTTCATGAAAGCACTAGTTGTGACTTTTATGGTGGATGCATCAAAGCGGGAACAAAAGATGCTATTTTATAAGGAACGGGGTTGGACTGAAGATGATTTTGTGTTGGCATTTAGAAAACATCCCCTGTTTATGACCTTCTCTGAGAAGAATATTTCGAGCAAAATGGATTTTCTTCTGAACAAGATGGGTTGGCAGCCTGCAAATGTGGCTGGGGATCCATATGTTTTAACTTATAGTTTGGAGAAGCGGATCATACCTACATGTTCAGTTATTAGAGTTCTCCTGTTGAAGGGCTTAATAACGAAGGGAGAGTGTTCCTTGGTTTCCATTCTGAAGAAAAGTGAGAAGTACTTGTTGAATAAGATTGTGCTCAAATATCAAGAGCAAGTACCTGAACTATTGAGCATCTATCAAAGCAAAATGGGTCTTGCAGACCTCAGATTAGGATTTTATGACAGAGCTAGACTGAATCATTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
mTERF

Protein Analysis

171

Amino Acids

19.7

Weight (kDa)

9.47

Isoelectric Point (pI)

56.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
mTERF PF02536 3 - 128 3.1e-17 mTERF
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000263)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G21150 AT1G21150 AT1G21150
fragaria_vesca FvH4_4g17900 FvH4_6g26110 FvH4_6g33880 FvH4_6g33900 FvH4_6g34011 FvH4_6g34011 FvH4_6g34011 FvH4_6g34011 FvH4_6g34030 FvH4_6g34040 FvH4_6g34070 FvH4_6g34070 FvH4_7g12830
malus_domestica MD09G1189800.v1.1 MD09G1189900.v1.1 MD09G1190000.v1.1 MD14G1088800.v1.1 MD14G1088900.v1.1 MD17G1172900.v1.1
pyrus_communis pycom07g03460 pycom09g10650 pycom14g07860
rosa_chinensis RchiOBHm_Chr1g0351891 RchiOBHm_Chr1g0351901 RchiOBHm_Chr2g0143771 RchiOBHm_Chr2g0143861 RchiOBHm_Chr2g0143881 RchiOBHm_Chr2g0143941 RchiOBHm_Chr2g0143951 RchiOBHm_Chr2g0144081 RchiOBHm_Chr2g0144091 RchiOBHm_Chr2g0144211 RchiOBHm_Chr2g0144231 RchiOBHm_Chr2g0144241 RchiOBHm_Chr2g0144291 RchiOBHm_Chr2g0144301 RchiOBHm_Chr2g0144311 RchiOBHm_Chr2g0144331 RchiOBHm_Chr2g0144341 RchiOBHm_Chr4g0422021 RchiOBHm_Chr4g0422031
rosa_laevigata RLG00000007639 RLG00000020063 RLG00000020071 RLG00000020072 RLG00000020074
rosa_multiflora Rmu_co8214640.1_g000001 Rmu_co8471033.1_g000001 Rmu_sc0000789.1_g000002 Rmu_sc0001321.1_g000001 Rmu_sc0004340.1_g000001 Rmu_sc0004897.1_g000001 Rmu_sc0007105.1_g000005 Rmu_sc0009498.1_g000001 Rmu_sc0009498.1_g000002 Rmu_sc0019136.1_g000001 Rmu_sc0020327.1_g000002 Rmu_sc0020327.1_g000003 Rmu_sc0022905.1_g000001 Rmu_sc0032602.1_g000003 Rmu_sc0032602.1_g000004
rosa_roxburghii Rroxscaffold_2G00101380 Rroxscaffold_2G00101390 Rroxscaffold_2G00101400 Rroxscaffold_2G00101410 Rroxscaffold_2G00101480 Rroxscaffold_2G00101490 Rroxscaffold_4G00303470 Rroxscaffold_5G00364130 Rroxscaffold_5G00364150
rosa_rugosa Rorug01G0222600 Rorug02G0384700 Rorug02G0384800 Rorug02G0385800 Rorug02G0385900 Rorug02G0386000 Rorug02G0386000 Rorug02G0386100 Rorug04G0176700 Rorug04G0176800.1
rosa_samantha Rh1AG236500 Rh1AG236600 Rh1BG206900 Rh1CG221000 Rh1CG221100 Rh2BG444800 Rh2BG444900 Rh2BG446600 Rh2BG446700 Rh2BG447600 Rh2BG448100 Rh2BG448400 Rh2BG448500 Rh2BG448700 Rh2BG448800 Rh2CG423500 Rh2CG423600 Rh2CG424800 Rh2CG424900 Rh2CG425100 Rh2CG425200 Rh2DG455200 Rh2DG455300 Rh2DG456900 Rh2DG457000 Rh2DG457100 Rh2DG457600 Rh2DG457900 Rh2DG458000 Rh2DG458300 Rh2DG458400 Rh4AG236100 Rh4AG236200 Rh4BG239200 Rh4CG250900 Rh4CG251100
rosa_wichuraiana Rw0G000400 Rw0G015990 Rw0G017200 Rw1G020580 Rw2G033310 Rw2G035630 Rw2G035640 Rw2G035790 Rw2G035800 Rw2G035840 Rw2G036160 Rw4G019830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 105
AciI CCGC 2 cut(s) 82, 283
AclWI GGATC 3 cut(s) 245, 258, 293
AcuI CTGAAG 2 cut(s) 144, 389
AfaI GTAC 2 cut(s) 386, 426
AfiI CCNNNNNNNGG 1 cut(s) 325
AflIII ACRYGT 1 cut(s) 296
AgsI TTSAA 2 cut(s) 325, 394
AhlI ACTAGT 1 cut(s) 49
AluBI AGCT 1 cut(s) 497
AluI AGCT 1 cut(s) 497
Alw21I GWGCWC 1 cut(s) 408
AlwI GGATC 3 cut(s) 245, 258, 293
ApeKI GCWGC 1 cut(s) 229
BamHI GGATCC 1 cut(s) 250
Bbv12I GWGCWC 1 cut(s) 408
BbvI GCAGC 1 cut(s) 241
BccI CCATC 1 cut(s) 214
BcuI ACTAGT 1 cut(s) 49
BfaI CTAG 2 cut(s) 50, 498
BisI GCNGC 1 cut(s) 230
BlsI GCNGC 1 cut(s) 231
BmcAI AGTACT 1 cut(s) 386
BmiI GGNNCC 1 cut(s) 252
BmsI GCATC 4 cut(s) 61, 83, 84, 450
BsaJI CCNNGG 1 cut(s) 354
Bsc4I CCNNNNNNNGG 1 cut(s) 325
BseDI CCNNGG 1 cut(s) 354
BseGI GGATG 2 cut(s) 76, 154
BseLI CCNNNNNNNGG 1 cut(s) 325
BseMII CTCAG 2 cut(s) 168, 487
BseXI GCAGC 1 cut(s) 241
BseYI CCCAGC 1 cut(s) 245
BsiHKAI GWGCWC 1 cut(s) 408
BslI CCNNNNNNNGG 1 cut(s) 325
Bsp1286I GDGCHC 1 cut(s) 408
Bsp143I GATC 2 cut(s) 250, 285
BspACI CCGC 2 cut(s) 82, 283
BspCNI CTCAG 2 cut(s) 169, 486
BspHI TCATGA 1 cut(s) 39
BspLI GGNNCC 1 cut(s) 252
BspPI GGATC 3 cut(s) 245, 258, 293
BssECI CCNNGG 1 cut(s) 354
BssMI GATC 2 cut(s) 250, 285
BssT1I CCWWGG 1 cut(s) 354
BstC8I GCNNGC 1 cut(s) 234
BstDEI CTNAG 2 cut(s) 177, 473
BstENI CCTNNNNNAGG 1 cut(s) 323
BstF5I GGATG 2 cut(s) 76, 154
BstKTI GATC 2 cut(s) 253, 288
BstMBI GATC 2 cut(s) 250, 285
BstMWI GCNNNNNNNGC 1 cut(s) 242
BstNSI RCATGY 1 cut(s) 300
BstV1I GCAGC 1 cut(s) 241
BstX2I RGATCY 1 cut(s) 250
BstYI RGATCY 1 cut(s) 250
BtsCI GGATG 2 cut(s) 76, 154
Cac8I GCNNGC 1 cut(s) 234
CciI TCATGA 1 cut(s) 39
Csp6I GTAC 2 cut(s) 385, 425
CviAII CATG 2 cut(s) 40, 297
CviJI RGCY 4 cut(s) 232, 245, 330, 497
CviKI_1 RGCY 4 cut(s) 232, 245, 330, 497
CviQI GTAC 2 cut(s) 385, 425
DdeI CTNAG 2 cut(s) 177, 473
DpnI GATC 2 cut(s) 252, 287
DpnII GATC 2 cut(s) 250, 285
Eco130I CCWWGG 1 cut(s) 354
Eco57I CTGAAG 2 cut(s) 144, 389
EcoNI CCTNNNNNAGG 1 cut(s) 323
EcoT14I CCWWGG 1 cut(s) 354
EcoT22I ATGCAT 1 cut(s) 76
ErhI CCWWGG 1 cut(s) 354
FaeI CATG 2 cut(s) 43, 300
FatI CATG 2 cut(s) 39, 296
FauI CCCGC 1 cut(s) 75
FauNDI CATATG 1 cut(s) 256
Fnu4HI GCNGC 1 cut(s) 230
FokI GGATG 2 cut(s) 83, 141
Fsp4HI GCNGC 1 cut(s) 230
FspBI CTAG 2 cut(s) 50, 498
GluI GCNGC 1 cut(s) 230
GsaI CCCAGC 1 cut(s) 249
Hin1II CATG 2 cut(s) 43, 300
HinfI GANTC 2 cut(s) 12, 505
Hpy188I TCNGA 4 cut(s) 178, 213, 369, 476
Hpy188III TCNNGA 2 cut(s) 40, 416
Hpy99I CGWCG 1 cut(s) 37
HpyAV CCTTC 4 cut(s) 30, 181, 319, 334
HpyCH4IV ACGT 1 cut(s) 35
HpyCH4V TGCA 3 cut(s) 74, 236, 467
HpyF10VI GCNNNNNNNGC 1 cut(s) 242
HpyF3I CTNAG 2 cut(s) 177, 473
HpySE526I ACGT 1 cut(s) 35
Hsp92II CATG 2 cut(s) 43, 300
Kzo9I GATC 2 cut(s) 250, 285
LpnPI CCDG 5 cut(s) 173, 231, 246, 332, 441
Lsp1109I GCAGC 1 cut(s) 241
LweI GCATC 4 cut(s) 61, 83, 84, 450
MaeI CTAG 2 cut(s) 50, 498
MaeII ACGT 1 cut(s) 35
MaeIII GTNAC 1 cut(s) 55
MalI GATC 2 cut(s) 252, 287
MboI GATC 2 cut(s) 250, 285
MboII GAAGA 4 cut(s) 137, 193, 200, 382
MflI RGATCY 1 cut(s) 250
MhlI GDGCHC 1 cut(s) 408
MmeI TCCRAC 1 cut(s) 98
MnlI CCTC 1 cut(s) 482
Mph1103I ATGCAT 1 cut(s) 76
MseI TTAA 2 cut(s) 263, 332
MwoI GCNNNNNNNGC 1 cut(s) 242
NdeI CATATG 1 cut(s) 256
NdeII GATC 2 cut(s) 250, 285
NlaIII CATG 2 cut(s) 43, 300
NlaIV GGNNCC 1 cut(s) 252
NmuCI GTSAC 1 cut(s) 55
NsiI ATGCAT 1 cut(s) 76
NspI RCATGY 1 cut(s) 300
PagI TCATGA 1 cut(s) 39
PciI ACATGT 1 cut(s) 296
PfeI GAWTC 2 cut(s) 12, 505
PkrI GCNGC 1 cut(s) 231
PscI ACATGT 1 cut(s) 296
PsiI TTATAA 1 cut(s) 105
PspFI CCCAGC 1 cut(s) 245
PspN4I GGNNCC 1 cut(s) 252
PsuI RGATCY 1 cut(s) 250
RsaI GTAC 2 cut(s) 386, 426
RsaNI GTAC 2 cut(s) 385, 425
SaqAI TTAA 2 cut(s) 263, 332
SatI GCNGC 1 cut(s) 230
Sau3AI GATC 2 cut(s) 250, 285
ScaI AGTACT 1 cut(s) 386
SduI GDGCHC 1 cut(s) 408
SetI ASST 7 cut(s) 22, 38, 173, 295, 430, 474, 499
SfaNI GCATC 4 cut(s) 61, 83, 84, 450
SpeI ACTAGT 1 cut(s) 49
SsiI CCGC 2 cut(s) 82, 283
SspI AATATT 1 cut(s) 187
SspMI CTAG 2 cut(s) 50, 498
StyI CCWWGG 1 cut(s) 354
TaiI ACGT 1 cut(s) 38
TaqI TCGA 2 cut(s) 15, 191
TatI WGTACW 1 cut(s) 384
TfiI GAWTC 2 cut(s) 12, 505
Tru1I TTAA 2 cut(s) 263, 332
Tru9I TTAA 2 cut(s) 263, 332
TseFI GTSAC 1 cut(s) 55
TseI GCWGC 1 cut(s) 229
Tsp45I GTSAC 1 cut(s) 55
TspDTI ATGAA 3 cut(s) 12, 28, 56
XagI CCTNNNNNAGG 1 cut(s) 323
XceI RCATGY 1 cut(s) 300
XspI CTAG 2 cut(s) 50, 498
ZrmI AGTACT 1 cut(s) 386
Zsp2I ATGCAT 1 cut(s) 76
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.