RchiOBHm_Chr2g0144301
ERF Family

mTERF

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000263
Physical Location & Seq
Forward (+)
61922799 .. 61924016
1218 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ51425

Sequence Viewer

Length: 252 bp
ATGAAGGTACGCTTCGACACCCCAGAAAAACCCGACTCTGTTATTAAGCTTTTTAAAGACTATGGACTCAGTGATGCCCACATCTCTGACATTGTTAAGAAATGCCCAGTTTTGCTTGTATCCAATGCTGAAAAGACCCTTTGGCCAAAACTCCAGTTTTTCACTTCCATTGGCCTTTCGGGCAATGACCTTGCCCGGATCTTCCGTGTCAACTTGCGTTATCTTGACATTGAGCTTAGAGAGAAGTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
mTERF

Protein Analysis

83

Amino Acids

9.65

Weight (kDa)

9.13

Isoelectric Point (pI)

26.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
mTERF PF02536 15 - 69 6.3e-09 mTERF
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000263)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G21150 AT1G21150 AT1G21150
fragaria_vesca FvH4_4g17900 FvH4_6g26110 FvH4_6g33880 FvH4_6g33900 FvH4_6g34011 FvH4_6g34011 FvH4_6g34011 FvH4_6g34011 FvH4_6g34030 FvH4_6g34040 FvH4_6g34070 FvH4_6g34070 FvH4_7g12830
malus_domestica MD09G1189800.v1.1 MD09G1189900.v1.1 MD09G1190000.v1.1 MD14G1088800.v1.1 MD14G1088900.v1.1 MD17G1172900.v1.1
pyrus_communis pycom07g03460 pycom09g10650 pycom14g07860
rosa_chinensis RchiOBHm_Chr1g0351891 RchiOBHm_Chr1g0351901 RchiOBHm_Chr2g0143771 RchiOBHm_Chr2g0143861 RchiOBHm_Chr2g0143881 RchiOBHm_Chr2g0143941 RchiOBHm_Chr2g0143951 RchiOBHm_Chr2g0144081 RchiOBHm_Chr2g0144091 RchiOBHm_Chr2g0144211 RchiOBHm_Chr2g0144231 RchiOBHm_Chr2g0144241 RchiOBHm_Chr2g0144291 RchiOBHm_Chr2g0144301 RchiOBHm_Chr2g0144311 RchiOBHm_Chr2g0144331 RchiOBHm_Chr2g0144341 RchiOBHm_Chr4g0422021 RchiOBHm_Chr4g0422031
rosa_laevigata RLG00000007639 RLG00000020063 RLG00000020071 RLG00000020072 RLG00000020074
rosa_multiflora Rmu_co8214640.1_g000001 Rmu_co8471033.1_g000001 Rmu_sc0000789.1_g000002 Rmu_sc0001321.1_g000001 Rmu_sc0004340.1_g000001 Rmu_sc0004897.1_g000001 Rmu_sc0007105.1_g000005 Rmu_sc0009498.1_g000001 Rmu_sc0009498.1_g000002 Rmu_sc0019136.1_g000001 Rmu_sc0020327.1_g000002 Rmu_sc0020327.1_g000003 Rmu_sc0022905.1_g000001 Rmu_sc0032602.1_g000003 Rmu_sc0032602.1_g000004
rosa_roxburghii Rroxscaffold_2G00101380 Rroxscaffold_2G00101390 Rroxscaffold_2G00101400 Rroxscaffold_2G00101410 Rroxscaffold_2G00101480 Rroxscaffold_2G00101490 Rroxscaffold_4G00303470 Rroxscaffold_5G00364130 Rroxscaffold_5G00364150
rosa_rugosa Rorug01G0222600 Rorug02G0384700 Rorug02G0384800 Rorug02G0385800 Rorug02G0385900 Rorug02G0386000 Rorug02G0386000 Rorug02G0386100 Rorug04G0176700 Rorug04G0176800.1
rosa_samantha Rh1AG236500 Rh1AG236600 Rh1BG206900 Rh1CG221000 Rh1CG221100 Rh2BG444800 Rh2BG444900 Rh2BG446600 Rh2BG446700 Rh2BG447600 Rh2BG448100 Rh2BG448400 Rh2BG448500 Rh2BG448700 Rh2BG448800 Rh2CG423500 Rh2CG423600 Rh2CG424800 Rh2CG424900 Rh2CG425100 Rh2CG425200 Rh2DG455200 Rh2DG455300 Rh2DG456900 Rh2DG457000 Rh2DG457100 Rh2DG457600 Rh2DG457900 Rh2DG458000 Rh2DG458300 Rh2DG458400 Rh4AG236100 Rh4AG236200 Rh4BG239200 Rh4CG250900 Rh4CG251100
rosa_wichuraiana Rw0G000400 Rw0G015990 Rw0G017200 Rw1G020580 Rw2G033310 Rw2G035630 Rw2G035640 Rw2G035790 Rw2G035800 Rw2G035840 Rw2G036160 Rw4G019830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 206
AcoI YGGCCR 1 cut(s) 143
AfaI GTAC 1 cut(s) 9
AluBI AGCT 2 cut(s) 49, 235
AluI AGCT 2 cut(s) 49, 235
AlwI GGATC 1 cut(s) 206
AoxI GGCC 2 cut(s) 143, 172
AsuC2I CCSGG 1 cut(s) 196
BalI TGGCCA 1 cut(s) 145
BciVI GTATCC 1 cut(s) 130
BcnI CCSGG 1 cut(s) 196
BfuI GTATCC 1 cut(s) 130
BglI GCCNNNNNGGC 1 cut(s) 180
Bme1390I CCNGG 1 cut(s) 196
BmrFI CCNGG 1 cut(s) 196
BmrI ACTGGG 1 cut(s) 101
BmsI GCATC 1 cut(s) 64
BmuI ACTGGG 1 cut(s) 101
BpmI CTGGAG 1 cut(s) 137
BpuMI CCSGG 1 cut(s) 196
Bse1I ACTGG 2 cut(s) 107, 154
Bse3DI GCAATG 1 cut(s) 190
BseMI GCAATG 1 cut(s) 190
BseMII CTCAG 1 cut(s) 82
BseNI ACTGG 2 cut(s) 107, 154
BshFI GGCC 2 cut(s) 145, 174
BsiSI CCGG 1 cut(s) 196
BsnI GGCC 2 cut(s) 145, 174
Bsp143I GATC 1 cut(s) 198
BspANI GGCC 2 cut(s) 145, 174
BspCNI CTCAG 1 cut(s) 81
BspPI GGATC 1 cut(s) 206
BsrDI GCAATG 1 cut(s) 190
BsrI ACTGG 2 cut(s) 107, 154
BssMI GATC 1 cut(s) 198
BstDEI CTNAG 2 cut(s) 68, 236
BstKTI GATC 1 cut(s) 201
BstMBI GATC 1 cut(s) 198
BstMWI GCNNNNNNNGC 1 cut(s) 180
BstSCI CCNGG 1 cut(s) 194
BstX2I RGATCY 1 cut(s) 198
BstYI RGATCY 1 cut(s) 198
BsuI GTATCC 1 cut(s) 130
BsuRI GGCC 2 cut(s) 145, 174
BtsIMutI CAGTG 1 cut(s) 76
Csp6I GTAC 1 cut(s) 8
CviJI RGCY 4 cut(s) 49, 145, 174, 235
CviKI_1 RGCY 4 cut(s) 49, 145, 174, 235
CviQI GTAC 1 cut(s) 8
DdeI CTNAG 2 cut(s) 68, 236
DpnI GATC 1 cut(s) 200
DpnII GATC 1 cut(s) 198
DraI TTTAAA 1 cut(s) 55
EaeI YGGCCR 1 cut(s) 143
FaiI YATR 1 cut(s) 63
FalI AAGNNNNNCTT 1 cut(s) 28
GsuI CTGGAG 1 cut(s) 137
HaeIII GGCC 2 cut(s) 145, 174
HapII CCGG 1 cut(s) 196
HincII GTYRAC 1 cut(s) 211
HindII GTYRAC 1 cut(s) 211
HindIII AAGCTT 1 cut(s) 47
HinfI GANTC 2 cut(s) 35, 66
HpaII CCGG 1 cut(s) 196
Hpy166II GTNNAC 1 cut(s) 211
Hpy188I TCNGA 1 cut(s) 88
Hpy188III TCNNGA 1 cut(s) 224
Hpy8I GTNNAC 1 cut(s) 211
HpyF10VI GCNNNNNNNGC 1 cut(s) 180
HpyF3I CTNAG 2 cut(s) 68, 236
Kzo9I GATC 1 cut(s) 198
LpnPI CCDG 4 cut(s) 36, 120, 167, 209
LweI GCATC 1 cut(s) 64
MalI GATC 1 cut(s) 200
MboI GATC 1 cut(s) 198
MboII GAAGA 1 cut(s) 193
MflI RGATCY 1 cut(s) 198
MlsI TGGCCA 1 cut(s) 145
MluNI TGGCCA 1 cut(s) 145
MlyI GAGTC 2 cut(s) 29, 60
Mox20I TGGCCA 1 cut(s) 145
MscI TGGCCA 1 cut(s) 145
MseI TTAA 3 cut(s) 45, 54, 96
Msp20I TGGCCA 1 cut(s) 145
MspI CCGG 1 cut(s) 196
MspR9I CCNGG 1 cut(s) 196
MwoI GCNNNNNNNGC 1 cut(s) 180
NciI CCSGG 1 cut(s) 196
NdeII GATC 1 cut(s) 198
PleI GAGTC 2 cut(s) 29, 60
PpsI GAGTC 2 cut(s) 29, 60
PsuI RGATCY 1 cut(s) 198
RsaI GTAC 1 cut(s) 9
RsaNI GTAC 1 cut(s) 8
SaqAI TTAA 3 cut(s) 45, 54, 96
Sau3AI GATC 1 cut(s) 198
SchI GAGTC 2 cut(s) 29, 60
ScrFI CCNGG 1 cut(s) 196
SetI ASST 4 cut(s) 9, 51, 192, 237
SfaNI GCATC 1 cut(s) 64
StyD4I CCNGG 1 cut(s) 194
TaqI TCGA 1 cut(s) 15
Tru1I TTAA 3 cut(s) 45, 54, 96
Tru9I TTAA 3 cut(s) 45, 54, 96
TscAI CASTG 1 cut(s) 76
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 194
TspRI CASTG 1 cut(s) 76
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.