MD09G1189900.v1.1
ERF Family

Mitochondrial transcription termination factor family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0000263
Physical Location & Seq
Reverse (-)
16585764 .. 16586096
333 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1189900.v1.1.491

Sequence Viewer

Length: 300 bp
ATGGATTTTCTTGTGAATATAATGGGTTGGCAGCGTGCAGATGTGGCCGGAAATCCAACTGTTCGACATAGAGGTTTGGAGAAGTGGATTGTAACAAGGTATTCAGTTATTAGAGTTCTTCGTTACAGAGGCTTTATAGTAAGGGGAGATTATTCTCTTGGGACCGTGCTGGTTGCTTATGGGCACAAATTCTTGGATAGGTTTGTAATCAAATATCATGATCAAGTACCTGAATTACCGAGCATCTTTGAAGGGAAATCCACACTTGCAGAACTAGGCTTAGGATTTGATCAAAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
mTERF

Protein Analysis

100

Amino Acids

11.42

Weight (kDa)

9.45

Isoelectric Point (pI)

15.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000263)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G21150 AT1G21150 AT1G21150
fragaria_vesca FvH4_4g17900 FvH4_6g26110 FvH4_6g33880 FvH4_6g33900 FvH4_6g34011 FvH4_6g34011 FvH4_6g34011 FvH4_6g34011 FvH4_6g34030 FvH4_6g34040 FvH4_6g34070 FvH4_6g34070 FvH4_7g12830
malus_domestica MD09G1189800.v1.1 MD09G1189900.v1.1 MD09G1190000.v1.1 MD14G1088800.v1.1 MD14G1088900.v1.1 MD17G1172900.v1.1
pyrus_communis pycom07g03460 pycom09g10650 pycom14g07860
rosa_chinensis RchiOBHm_Chr1g0351891 RchiOBHm_Chr1g0351901 RchiOBHm_Chr2g0143771 RchiOBHm_Chr2g0143861 RchiOBHm_Chr2g0143881 RchiOBHm_Chr2g0143941 RchiOBHm_Chr2g0143951 RchiOBHm_Chr2g0144081 RchiOBHm_Chr2g0144091 RchiOBHm_Chr2g0144211 RchiOBHm_Chr2g0144231 RchiOBHm_Chr2g0144241 RchiOBHm_Chr2g0144291 RchiOBHm_Chr2g0144301 RchiOBHm_Chr2g0144311 RchiOBHm_Chr2g0144331 RchiOBHm_Chr2g0144341 RchiOBHm_Chr4g0422021 RchiOBHm_Chr4g0422031
rosa_laevigata RLG00000007639 RLG00000020063 RLG00000020071 RLG00000020072 RLG00000020074
rosa_multiflora Rmu_co8214640.1_g000001 Rmu_co8471033.1_g000001 Rmu_sc0000789.1_g000002 Rmu_sc0001321.1_g000001 Rmu_sc0004340.1_g000001 Rmu_sc0004897.1_g000001 Rmu_sc0007105.1_g000005 Rmu_sc0009498.1_g000001 Rmu_sc0009498.1_g000002 Rmu_sc0019136.1_g000001 Rmu_sc0020327.1_g000002 Rmu_sc0020327.1_g000003 Rmu_sc0022905.1_g000001 Rmu_sc0032602.1_g000003 Rmu_sc0032602.1_g000004
rosa_roxburghii Rroxscaffold_2G00101380 Rroxscaffold_2G00101390 Rroxscaffold_2G00101400 Rroxscaffold_2G00101410 Rroxscaffold_2G00101480 Rroxscaffold_2G00101490 Rroxscaffold_4G00303470 Rroxscaffold_5G00364130 Rroxscaffold_5G00364150
rosa_rugosa Rorug01G0222600 Rorug02G0384700 Rorug02G0384800 Rorug02G0385800 Rorug02G0385900 Rorug02G0386000 Rorug02G0386000 Rorug02G0386100 Rorug04G0176700 Rorug04G0176800.1
rosa_samantha Rh1AG236500 Rh1AG236600 Rh1BG206900 Rh1CG221000 Rh1CG221100 Rh2BG444800 Rh2BG444900 Rh2BG446600 Rh2BG446700 Rh2BG447600 Rh2BG448100 Rh2BG448400 Rh2BG448500 Rh2BG448700 Rh2BG448800 Rh2CG423500 Rh2CG423600 Rh2CG424800 Rh2CG424900 Rh2CG425100 Rh2CG425200 Rh2DG455200 Rh2DG455300 Rh2DG456900 Rh2DG457000 Rh2DG457100 Rh2DG457600 Rh2DG457900 Rh2DG458000 Rh2DG458300 Rh2DG458400 Rh4AG236100 Rh4AG236200 Rh4BG239200 Rh4CG250900 Rh4CG251100
rosa_wichuraiana Rw0G000400 Rw0G015990 Rw0G017200 Rw1G020580 Rw2G033310 Rw2G035630 Rw2G035640 Rw2G035790 Rw2G035800 Rw2G035840 Rw2G036160 Rw4G019830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 45
AcsI RAATTY 1 cut(s) 188
AfaI GTAC 1 cut(s) 228
AgsI TTSAA 1 cut(s) 251
AoxI GGCC 1 cut(s) 45
ApeKI GCWGC 1 cut(s) 31
ApoI RAATTY 1 cut(s) 188
AspS9I GGNCC 1 cut(s) 162
AvaII GGWCC 1 cut(s) 162
BaeGI GKGCMC 1 cut(s) 186
BbvI GCAGC 1 cut(s) 43
BclI TGATCA 2 cut(s) 220, 289
BfaI CTAG 1 cut(s) 275
BisI GCNGC 1 cut(s) 32
BlsI GCNGC 1 cut(s) 33
Bme18I GGWCC 1 cut(s) 162
BmgT120I GGNCC 1 cut(s) 162
BmiI GGNNCC 1 cut(s) 163
BmsI GCATC 1 cut(s) 252
Bpu10I CCTNAGC 1 cut(s) 280
BseSI GKGCMC 1 cut(s) 186
BseXI GCAGC 1 cut(s) 43
BsgI GTGCAG 1 cut(s) 57
BshFI GGCC 1 cut(s) 47
BsiSI CCGG 1 cut(s) 48
BslFI GGGAC 1 cut(s) 175
BsmFI GGGAC 1 cut(s) 175
BsnI GGCC 1 cut(s) 47
Bsp1286I GDGCHC 1 cut(s) 186
Bsp143I GATC 2 cut(s) 220, 289
BspANI GGCC 1 cut(s) 47
BspHI TCATGA 1 cut(s) 217
BspLI GGNNCC 1 cut(s) 163
BssMI GATC 2 cut(s) 220, 289
Bst4CI ACNGT 2 cut(s) 61, 166
BstC8I GCNNGC 1 cut(s) 36
BstDEI CTNAG 1 cut(s) 280
BstKTI GATC 2 cut(s) 223, 292
BstMBI GATC 2 cut(s) 220, 289
BstMWI GCNNNNNNNGC 1 cut(s) 44
BstSLI GKGCMC 1 cut(s) 186
BstV1I GCAGC 1 cut(s) 43
BsuRI GGCC 1 cut(s) 47
Cac8I GCNNGC 1 cut(s) 36
CciI TCATGA 1 cut(s) 217
Cfr13I GGNCC 1 cut(s) 162
Csp6I GTAC 1 cut(s) 227
CviAII CATG 1 cut(s) 218
CviJI RGCY 3 cut(s) 47, 132, 279
CviKI_1 RGCY 3 cut(s) 47, 132, 279
CviQI GTAC 1 cut(s) 227
DdeI CTNAG 1 cut(s) 280
DpnI GATC 2 cut(s) 222, 291
DpnII GATC 2 cut(s) 220, 289
EaeI YGGCCR 1 cut(s) 45
Eco47I GGWCC 1 cut(s) 162
FaeI CATG 1 cut(s) 221
FaiI YATR 5 cut(s) 20, 69, 137, 180, 219
FaqI GGGAC 1 cut(s) 175
FatI CATG 1 cut(s) 217
FbaI TGATCA 2 cut(s) 220, 289
Fnu4HI GCNGC 1 cut(s) 32
Fsp4HI GCNGC 1 cut(s) 32
FspBI CTAG 1 cut(s) 275
GluI GCNGC 1 cut(s) 32
HaeIII GGCC 1 cut(s) 47
HapII CCGG 1 cut(s) 48
Hin1II CATG 1 cut(s) 221
HpaII CCGG 1 cut(s) 48
Hpy188III TCNNGA 1 cut(s) 218
HpyAV CCTTC 1 cut(s) 245
HpyCH4III ACNGT 2 cut(s) 61, 166
HpyCH4V TGCA 2 cut(s) 38, 269
HpyF10VI GCNNNNNNNGC 1 cut(s) 44
HpyF3I CTNAG 1 cut(s) 280
Hsp92II CATG 1 cut(s) 221
Ksp22I TGATCA 2 cut(s) 220, 289
Kzo9I GATC 2 cut(s) 220, 289
LpnPI CCDG 3 cut(s) 61, 155, 243
Lsp1109I GCAGC 1 cut(s) 43
LweI GCATC 1 cut(s) 252
MaeI CTAG 1 cut(s) 275
MaeIII GTNAC 2 cut(s) 91, 122
MalI GATC 2 cut(s) 222, 291
MboI GATC 2 cut(s) 220, 289
MboII GAAGA 1 cut(s) 110
MhlI GDGCHC 1 cut(s) 186
MluCI AATT 2 cut(s) 188, 233
MmeI TCCRAC 1 cut(s) 80
MnlI CCTC 2 cut(s) 65, 122
MspI CCGG 1 cut(s) 48
MwoI GCNNNNNNNGC 1 cut(s) 44
NdeII GATC 2 cut(s) 220, 289
NlaIII CATG 1 cut(s) 221
NlaIV GGNNCC 1 cut(s) 163
PagI TCATGA 1 cut(s) 217
PkrI GCNGC 1 cut(s) 33
PspN4I GGNNCC 1 cut(s) 163
PspPI GGNCC 1 cut(s) 162
RsaI GTAC 1 cut(s) 228
RsaNI GTAC 1 cut(s) 227
SatI GCNGC 1 cut(s) 32
Sau3AI GATC 2 cut(s) 220, 289
Sau96I GGNCC 1 cut(s) 162
SduI GDGCHC 1 cut(s) 186
SetI ASST 4 cut(s) 76, 101, 203, 232
SfaNI GCATC 1 cut(s) 252
SinI GGWCC 1 cut(s) 162
Sse9I AATT 2 cut(s) 188, 233
SspMI CTAG 1 cut(s) 275
TaaI ACNGT 2 cut(s) 61, 166
TaqI TCGA 1 cut(s) 64
TasI AATT 2 cut(s) 188, 233
TseI GCWGC 1 cut(s) 31
VpaK11BI GGWCC 1 cut(s) 162
XapI RAATTY 1 cut(s) 188
XspI CTAG 1 cut(s) 275
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.