FvH4_4g17900
ERF Family

Mitochondrial transcription termination factor family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000263
Physical Location & Seq
Forward (+)
21867360 .. 21870387
3028 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g17900.t1

Sequence Viewer

Length: 804 bp
TACACAACTGCCAGAAGTTCAAAACCCTACTTCATCTCTCCCGTTCTCAGCGTGCTCTGTGCATTCTTCCAGAGTAGCCGAAACCAAGTATTTCCAATTCACGAGTGGAGGAGCAGAACTGAGCAGAGACTTGGAATAGGGAGTAAGCGAAGCACCCACAATTGCCGGCCGGTTCAAACTGAGCAGAGAATTCATATTGGTCTCAGAGAACTTGAAGTGCCAGGATCCGCAGTGTCTGCATATGTGGCTCGGAGACCTTTCCTACTGTGCCTCGAAATTGAGAAGTTTAACAAAACTGTCAAGAAGGTCATGAGTATGGGAATCTACCCTTCGTCAGCAACATTCATGAAAGCACTATGTGTGATTTGTTTGACGGATGCATCAAAATGGGAACAAAAAATGAATTTCTATAAACAGTGTGGTTGGAGTGAAGAGGACTTTTTGGTGGCATTTAGAAAGAATCCCTTCTTTGTGCTATTGACAGAGAAGAATATTTCTAAGAAAATGGATTTTATTGTCAACAAAATGGCTTTGTTTCAGCCTGCAGATTTGGGTTATTATCCAACTGGCTTGACCTATAGTTTGGAGAATTGGATAATACCTAGGTGTTCAGTTATTAGAGTTCTCCTACTGAAGGGTTTAATAACAAGGGGAGAATTCAGTTTCAGCAGTTCGATGGTCTACAGGGAGTACTTCGTGGATAGGTTTGTGGTGCAACATCAAGAGGAAGTACCTGAATTGCTCAGCATCTTTGAAGGGAAAATGAGTCTTGCGGAACTGGGCTTAGGATTTGAGGAAAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
mTERF

Protein Analysis

268

Amino Acids

30.83

Weight (kDa)

9.11

Isoelectric Point (pI)

61.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
mTERF PF02536 54 - 224 7.3e-16 mTERF
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000263)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G21150 AT1G21150 AT1G21150
fragaria_vesca FvH4_4g17900 FvH4_6g26110 FvH4_6g33880 FvH4_6g33900 FvH4_6g34011 FvH4_6g34011 FvH4_6g34011 FvH4_6g34011 FvH4_6g34030 FvH4_6g34040 FvH4_6g34070 FvH4_6g34070 FvH4_7g12830
malus_domestica MD09G1189800.v1.1 MD09G1189900.v1.1 MD09G1190000.v1.1 MD14G1088800.v1.1 MD14G1088900.v1.1 MD17G1172900.v1.1
pyrus_communis pycom07g03460 pycom09g10650 pycom14g07860
rosa_chinensis RchiOBHm_Chr1g0351891 RchiOBHm_Chr1g0351901 RchiOBHm_Chr2g0143771 RchiOBHm_Chr2g0143861 RchiOBHm_Chr2g0143881 RchiOBHm_Chr2g0143941 RchiOBHm_Chr2g0143951 RchiOBHm_Chr2g0144081 RchiOBHm_Chr2g0144091 RchiOBHm_Chr2g0144211 RchiOBHm_Chr2g0144231 RchiOBHm_Chr2g0144241 RchiOBHm_Chr2g0144291 RchiOBHm_Chr2g0144301 RchiOBHm_Chr2g0144311 RchiOBHm_Chr2g0144331 RchiOBHm_Chr2g0144341 RchiOBHm_Chr4g0422021 RchiOBHm_Chr4g0422031
rosa_laevigata RLG00000007639 RLG00000020063 RLG00000020071 RLG00000020072 RLG00000020074
rosa_multiflora Rmu_co8214640.1_g000001 Rmu_co8471033.1_g000001 Rmu_sc0000789.1_g000002 Rmu_sc0001321.1_g000001 Rmu_sc0004340.1_g000001 Rmu_sc0004897.1_g000001 Rmu_sc0007105.1_g000005 Rmu_sc0009498.1_g000001 Rmu_sc0009498.1_g000002 Rmu_sc0019136.1_g000001 Rmu_sc0020327.1_g000002 Rmu_sc0020327.1_g000003 Rmu_sc0022905.1_g000001 Rmu_sc0032602.1_g000003 Rmu_sc0032602.1_g000004
rosa_roxburghii Rroxscaffold_2G00101380 Rroxscaffold_2G00101390 Rroxscaffold_2G00101400 Rroxscaffold_2G00101410 Rroxscaffold_2G00101480 Rroxscaffold_2G00101490 Rroxscaffold_4G00303470 Rroxscaffold_5G00364130 Rroxscaffold_5G00364150
rosa_rugosa Rorug01G0222600 Rorug02G0384700 Rorug02G0384800 Rorug02G0385800 Rorug02G0385900 Rorug02G0386000 Rorug02G0386000 Rorug02G0386100 Rorug04G0176700 Rorug04G0176800.1
rosa_samantha Rh1AG236500 Rh1AG236600 Rh1BG206900 Rh1CG221000 Rh1CG221100 Rh2BG444800 Rh2BG444900 Rh2BG446600 Rh2BG446700 Rh2BG447600 Rh2BG448100 Rh2BG448400 Rh2BG448500 Rh2BG448700 Rh2BG448800 Rh2CG423500 Rh2CG423600 Rh2CG424800 Rh2CG424900 Rh2CG425100 Rh2CG425200 Rh2DG455200 Rh2DG455300 Rh2DG456900 Rh2DG457000 Rh2DG457100 Rh2DG457600 Rh2DG457900 Rh2DG458000 Rh2DG458300 Rh2DG458400 Rh4AG236100 Rh4AG236200 Rh4BG239200 Rh4CG250900 Rh4CG251100
rosa_wichuraiana Rw0G000400 Rw0G015990 Rw0G017200 Rw1G020580 Rw2G033310 Rw2G035630 Rw2G035640 Rw2G035790 Rw2G035800 Rw2G035840 Rw2G036160 Rw4G019830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 681
AciI CCGC 2 cut(s) 228, 773
AclWI GGATC 2 cut(s) 219, 232
AcoI YGGCCR 1 cut(s) 167
AcsI RAATTY 3 cut(s) 189, 403, 656
AcuI CTGAAG 1 cut(s) 653
AdeI CACNNNGTG 1 cut(s) 359
AfaI GTAC 2 cut(s) 692, 732
AfiI CCNNNNNNNGG 1 cut(s) 634
AgsI TTSAA 4 cut(s) 21, 176, 215, 755
AjnI CCWGG 1 cut(s) 220
Alw21I GWGCWC 1 cut(s) 57
Alw26I GTCTC 3 cut(s) 121, 206, 247
AlwI GGATC 2 cut(s) 219, 232
AlwNI CAGNNNCTG 1 cut(s) 236
AoxI GGCC 1 cut(s) 167
ApoI RAATTY 3 cut(s) 189, 403, 656
ArsI GACNNNNNNTTYG 2 cut(s) 565, 597
Asp700I GAANNNNTTC 1 cut(s) 464
AspA2I CCTAGG 1 cut(s) 602
AvrII CCTAGG 1 cut(s) 602
BamHI GGATCC 1 cut(s) 224
BauI CACGAG 1 cut(s) 101
Bbv12I GWGCWC 1 cut(s) 57
BccI CCATC 1 cut(s) 670
BciT130I CCWGG 1 cut(s) 222
BcoDI GTCTC 3 cut(s) 121, 206, 247
BfaI CTAG 1 cut(s) 603
BfmI CTRYAG 3 cut(s) 543, 577, 682
BlnI CCTAGG 1 cut(s) 602
BlpI GCTNAGC 1 cut(s) 743
BmcAI AGTACT 1 cut(s) 692
Bme1390I CCNGG 1 cut(s) 222
BmiI GGNNCC 1 cut(s) 226
BmrFI CCNGG 1 cut(s) 222
BmrI ACTGGG 1 cut(s) 788
BmsI GCATC 3 cut(s) 367, 389, 756
BmuI ACTGGG 1 cut(s) 788
Bpu10I CCTNAGC 1 cut(s) 784
Bpu1102I GCTNAGC 1 cut(s) 743
BsaI GGTCTC 2 cut(s) 206, 247
BsaJI CCNNGG 1 cut(s) 602
Bsc4I CCNNNNNNNGG 1 cut(s) 634
Bse118I RCCGGY 2 cut(s) 165, 169
Bse1I ACTGG 2 cut(s) 571, 783
BseBI CCWGG 1 cut(s) 222
BseDI CCNNGG 1 cut(s) 602
BseGI GGATG 1 cut(s) 382
BseLI CCNNNNNNNGG 1 cut(s) 634
BseMII CTCAG 5 cut(s) 61, 111, 171, 217, 757
BseNI ACTGG 2 cut(s) 571, 783
BseRI GAGGAG 1 cut(s) 124
BseX3I CGGCCG 1 cut(s) 167
Bsh1285I CGRYCG 1 cut(s) 170
BshFI GGCC 1 cut(s) 169
BsiEI CGRYCG 1 cut(s) 170
BsiHKAI GWGCWC 1 cut(s) 57
BsiSI CCGG 2 cut(s) 166, 170
BslI CCNNNNNNNGG 1 cut(s) 634
BsmAI GTCTC 3 cut(s) 121, 206, 247
BsmI GAATGC 1 cut(s) 62
BsnI GGCC 1 cut(s) 169
Bso31I GGTCTC 2 cut(s) 206, 247
Bsp1286I GDGCHC 1 cut(s) 57
Bsp143I GATC 1 cut(s) 224
Bsp1720I GCTNAGC 1 cut(s) 743
BspACI CCGC 2 cut(s) 228, 773
BspANI GGCC 1 cut(s) 169
BspCNI CTCAG 5 cut(s) 60, 112, 172, 216, 756
BspHI TCATGA 2 cut(s) 309, 345
BspLI GGNNCC 1 cut(s) 226
BspMAI CTGCAG 1 cut(s) 547
BspPI GGATC 2 cut(s) 219, 232
BspTNI GGTCTC 2 cut(s) 206, 247
BsrFI RCCGGY 2 cut(s) 165, 169
BsrI ACTGG 2 cut(s) 571, 783
BssAI RCCGGY 2 cut(s) 165, 169
BssECI CCNNGG 1 cut(s) 602
BssMI GATC 1 cut(s) 224
BssSI CACGAG 1 cut(s) 101
BssT1I CCWWGG 1 cut(s) 602
Bst2BI CACGAG 1 cut(s) 101
Bst2UI CCWGG 1 cut(s) 222
Bst4CI ACNGT 3 cut(s) 267, 298, 417
Bst6I CTCTTC 1 cut(s) 426
BstAPI GCANNNNNTGC 1 cut(s) 236
BstC8I GCNNGC 3 cut(s) 53, 167, 543
BstDEI CTNAG 7 cut(s) 47, 120, 180, 203, 498, 743, 784
BstENI CCTNNNNNAGG 1 cut(s) 632
BstF5I GGATG 1 cut(s) 382
BstKTI GATC 1 cut(s) 227
BstMAI GTCTC 3 cut(s) 121, 206, 247
BstMBI GATC 1 cut(s) 224
BstMCI CGRYCG 1 cut(s) 170
BstMWI GCNNNNNNNGC 2 cut(s) 236, 245
BstNI CCWGG 1 cut(s) 222
BstSCI CCNGG 1 cut(s) 220
BstSFI CTRYAG 3 cut(s) 543, 577, 682
BstX2I RGATCY 1 cut(s) 224
BstYI RGATCY 1 cut(s) 224
BstZI CGGCCG 1 cut(s) 167
BsuRI GGCC 1 cut(s) 169
BtsCI GGATG 1 cut(s) 382
BtsI GCAGTG 1 cut(s) 237
BtsIMutI CAGTG 2 cut(s) 237, 422
Cac8I GCNNGC 3 cut(s) 53, 167, 543
CaiI CAGNNNCTG 1 cut(s) 236
CciI TCATGA 2 cut(s) 309, 345
Cfr10I RCCGGY 2 cut(s) 165, 169
Csp6I GTAC 2 cut(s) 691, 731
CviAII CATG 2 cut(s) 310, 346
CviJI RGCY 7 cut(s) 78, 169, 248, 530, 541, 570, 783
CviKI_1 RGCY 7 cut(s) 78, 169, 248, 530, 541, 570, 783
CviQI GTAC 2 cut(s) 691, 731
DdeI CTNAG 7 cut(s) 47, 120, 180, 203, 498, 743, 784
DpnI GATC 1 cut(s) 226
DpnII GATC 1 cut(s) 224
DraIII CACNNNGTG 1 cut(s) 359
EaeI YGGCCR 1 cut(s) 167
EagI CGGCCG 1 cut(s) 167
Eam1104I CTCTTC 1 cut(s) 426
EarI CTCTTC 1 cut(s) 426
EclXI CGGCCG 1 cut(s) 167
Eco130I CCWWGG 1 cut(s) 602
Eco31I GGTCTC 2 cut(s) 206, 247
Eco52I CGGCCG 1 cut(s) 167
Eco57I CTGAAG 1 cut(s) 653
EcoNI CCTNNNNNAGG 1 cut(s) 632
EcoRI GAATTC 2 cut(s) 189, 656
EcoRII CCWGG 1 cut(s) 220
EcoT14I CCWWGG 1 cut(s) 602
EcoT22I ATGCAT 1 cut(s) 382
ErhI CCWWGG 1 cut(s) 602
FaeI CATG 2 cut(s) 313, 349
FaiI YATR 9 cut(s) 195, 241, 243, 311, 317, 347, 358, 411, 579
FalI AAGNNNNNCTT 2 cut(s) 449, 481
FatI CATG 2 cut(s) 309, 345
FauNDI CATATG 1 cut(s) 241
FblI GTMKAC 1 cut(s) 681
FokI GGATG 1 cut(s) 389
FspBI CTAG 1 cut(s) 603
HaeIII GGCC 1 cut(s) 169
HapII CCGG 2 cut(s) 166, 170
Hin1II CATG 2 cut(s) 313, 349
HincII GTYRAC 1 cut(s) 520
HindII GTYRAC 1 cut(s) 520
HinfI GANTC 3 cut(s) 321, 460, 766
HpaII CCGG 2 cut(s) 166, 170
Hpy166II GTNNAC 2 cut(s) 520, 682
Hpy188I TCNGA 2 cut(s) 206, 252
Hpy188III TCNNGA 6 cut(s) 70, 101, 301, 310, 346, 722
Hpy8I GTNNAC 2 cut(s) 520, 682
HpyAV CCTTC 5 cut(s) 298, 339, 475, 628, 749
HpyCH4III ACNGT 3 cut(s) 267, 298, 417
HpyCH4V TGCA 5 cut(s) 62, 239, 380, 545, 715
HpyF10VI GCNNNNNNNGC 2 cut(s) 236, 245
HpyF3I CTNAG 7 cut(s) 47, 120, 180, 203, 498, 743, 784
Hsp92II CATG 2 cut(s) 313, 349
KroI GCCGGC 1 cut(s) 165
KroNI GCCGGC 1 cut(s) 167
Kzo9I GATC 1 cut(s) 224
LmnI GCTCC 1 cut(s) 111
LweI GCATC 3 cut(s) 367, 389, 756
MaeI CTAG 1 cut(s) 603
MalI GATC 1 cut(s) 226
MboI GATC 1 cut(s) 224
MboII GAAGA 3 cut(s) 58, 443, 499
MfeI CAATTG 1 cut(s) 160
MflI RGATCY 1 cut(s) 224
MhlI GDGCHC 1 cut(s) 57
MluCI AATT 8 cut(s) 96, 160, 189, 276, 403, 589, 656, 737
MlyI GAGTC 1 cut(s) 775
MmeI TCCRAC 2 cut(s) 404, 587
MnlI CCTC 5 cut(s) 102, 281, 427, 718, 787
Mph1103I ATGCAT 1 cut(s) 382
MroNI GCCGGC 1 cut(s) 165
MroXI GAANNNNTTC 1 cut(s) 464
MseI TTAA 2 cut(s) 288, 641
MslI CAYNNNNRTG 2 cut(s) 314, 385
MspI CCGG 2 cut(s) 166, 170
MspR9I CCNGG 1 cut(s) 222
MunI CAATTG 1 cut(s) 160
Mva1269I GAATGC 1 cut(s) 62
MvaI CCWGG 1 cut(s) 222
MwoI GCNNNNNNNGC 2 cut(s) 236, 245
NaeI GCCGGC 1 cut(s) 167
NdeI CATATG 1 cut(s) 241
NdeII GATC 1 cut(s) 224
NgoMIV GCCGGC 1 cut(s) 165
NlaIII CATG 2 cut(s) 313, 349
NlaIV GGNNCC 1 cut(s) 226
NsiI ATGCAT 1 cut(s) 382
PagI TCATGA 2 cut(s) 309, 345
PctI GAATGC 1 cut(s) 62
PdiI GCCGGC 1 cut(s) 167
PdmI GAANNNNTTC 1 cut(s) 464
PfeI GAWTC 2 cut(s) 321, 460
PleI GAGTC 1 cut(s) 774
PpsI GAGTC 1 cut(s) 774
Psp6I CCWGG 1 cut(s) 220
PspGI CCWGG 1 cut(s) 220
PspN4I GGNNCC 1 cut(s) 226
PstI CTGCAG 1 cut(s) 547
PstNI CAGNNNCTG 1 cut(s) 236
PsuI RGATCY 1 cut(s) 224
RsaI GTAC 2 cut(s) 692, 732
RsaNI GTAC 2 cut(s) 691, 731
RseI CAYNNNNRTG 2 cut(s) 314, 385
SaqAI TTAA 2 cut(s) 288, 641
Sau3AI GATC 1 cut(s) 224
ScaI AGTACT 1 cut(s) 692
SchI GAGTC 1 cut(s) 775
ScrFI CCNGG 1 cut(s) 222
SduI GDGCHC 1 cut(s) 57
SetI ASST 7 cut(s) 259, 309, 578, 604, 608, 707, 736
SfaNI GCATC 3 cut(s) 367, 389, 756
SfcI CTRYAG 3 cut(s) 543, 577, 682
SmiMI CAYNNNNRTG 2 cut(s) 314, 385
Sse9I AATT 8 cut(s) 96, 160, 189, 276, 403, 589, 656, 737
SsiI CCGC 2 cut(s) 228, 773
SspI AATATT 1 cut(s) 493
SspMI CTAG 1 cut(s) 603
StyD4I CCNGG 1 cut(s) 220
StyI CCWWGG 1 cut(s) 602
TaaI ACNGT 3 cut(s) 267, 298, 417
TaqI TCGA 2 cut(s) 273, 674
TasI AATT 8 cut(s) 96, 160, 189, 276, 403, 589, 656, 737
TatI WGTACW 1 cut(s) 690
TfiI GAWTC 2 cut(s) 321, 460
Tru1I TTAA 2 cut(s) 288, 641
Tru9I TTAA 2 cut(s) 288, 641
TscAI CASTG 2 cut(s) 237, 422
TspDTI ATGAA 5 cut(s) 22, 182, 334, 362, 416
TspGWI ACGGA 1 cut(s) 389
TspRI CASTG 2 cut(s) 237, 422
XagI CCTNNNNNAGG 1 cut(s) 632
XapI RAATTY 3 cut(s) 189, 403, 656
XcmI CCANNNNNNNNNTGG 1 cut(s) 102
XmaJI CCTAGG 1 cut(s) 602
XmiI GTMKAC 1 cut(s) 681
XmnI GAANNNNTTC 1 cut(s) 464
XspI CTAG 1 cut(s) 603
ZrmI AGTACT 1 cut(s) 692
Zsp2I ATGCAT 1 cut(s) 382
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.