Rmu_co8214640.1_g000001
ERF Family

mTERF

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8214640.1
OG0000263
Physical Location & Seq
Reverse (-)
2 .. 718
717 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8214640.1_g000001.1.cds

Sequence Viewer

Length: 717 bp
ctgaaacactatggattcagtgatacccatgtctcccaaattgttaagaaactcccaacccttctcttagtcaatgctaaaaagacccttgtccccaaacttgagtttcttggttccattggaattacaggcactgaccttactcggctcgtttgcggcagcccaaatgttttgtcctatagcctcgacaataatctcaggccttgttacgatgtcatcagaactctacctatcggtgacgaaaaggttggtctcttcatgaggaattcgtgtcggatactgaatgtcaaagcactaagcaatgctgctagcaatgtgtcatttctgagatcacttcaagtgccagaatcctcaatcactttgtgtgccctctattatcttattgcggtatcccgagacactgccaagtttagggattatgtagggaaggtcatcagtatgggatttatcccttcatccacaacctttgtgagagccgtgtatgtgatttctatgatgaatggatcaaaatgggcacaaagggtgggattttacaggaagtggggttgggctgaagatgatgtactgtctgcgtttagaaagagtcccacgtttatgttcttgagtgaggagaatgtctccattaaattggatttttatttgaacaaaatgggttggcagccagccaatgtagctcaacatcccgctgttctaacttatagtttggagaagtggatc
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
mTERF

Protein Analysis

239

Amino Acids

26.88

Weight (kDa)

9.55

Isoelectric Point (pI)

34.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000263)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G21150 AT1G21150 AT1G21150
fragaria_vesca FvH4_4g17900 FvH4_6g26110 FvH4_6g33880 FvH4_6g33900 FvH4_6g34011 FvH4_6g34011 FvH4_6g34011 FvH4_6g34011 FvH4_6g34030 FvH4_6g34040 FvH4_6g34070 FvH4_6g34070 FvH4_7g12830
malus_domestica MD09G1189800.v1.1 MD09G1189900.v1.1 MD09G1190000.v1.1 MD14G1088800.v1.1 MD14G1088900.v1.1 MD17G1172900.v1.1
pyrus_communis pycom07g03460 pycom09g10650 pycom14g07860
rosa_chinensis RchiOBHm_Chr1g0351891 RchiOBHm_Chr1g0351901 RchiOBHm_Chr2g0143771 RchiOBHm_Chr2g0143861 RchiOBHm_Chr2g0143881 RchiOBHm_Chr2g0143941 RchiOBHm_Chr2g0143951 RchiOBHm_Chr2g0144081 RchiOBHm_Chr2g0144091 RchiOBHm_Chr2g0144211 RchiOBHm_Chr2g0144231 RchiOBHm_Chr2g0144241 RchiOBHm_Chr2g0144291 RchiOBHm_Chr2g0144301 RchiOBHm_Chr2g0144311 RchiOBHm_Chr2g0144331 RchiOBHm_Chr2g0144341 RchiOBHm_Chr4g0422021 RchiOBHm_Chr4g0422031
rosa_laevigata RLG00000007639 RLG00000020063 RLG00000020071 RLG00000020072 RLG00000020074
rosa_multiflora Rmu_co8214640.1_g000001 Rmu_co8471033.1_g000001 Rmu_sc0000789.1_g000002 Rmu_sc0001321.1_g000001 Rmu_sc0004340.1_g000001 Rmu_sc0004897.1_g000001 Rmu_sc0007105.1_g000005 Rmu_sc0009498.1_g000001 Rmu_sc0009498.1_g000002 Rmu_sc0019136.1_g000001 Rmu_sc0020327.1_g000002 Rmu_sc0020327.1_g000003 Rmu_sc0022905.1_g000001 Rmu_sc0032602.1_g000003 Rmu_sc0032602.1_g000004
rosa_roxburghii Rroxscaffold_2G00101380 Rroxscaffold_2G00101390 Rroxscaffold_2G00101400 Rroxscaffold_2G00101410 Rroxscaffold_2G00101480 Rroxscaffold_2G00101490 Rroxscaffold_4G00303470 Rroxscaffold_5G00364130 Rroxscaffold_5G00364150
rosa_rugosa Rorug01G0222600 Rorug02G0384700 Rorug02G0384800 Rorug02G0385800 Rorug02G0385900 Rorug02G0386000 Rorug02G0386000 Rorug02G0386100 Rorug04G0176700 Rorug04G0176800.1
rosa_samantha Rh1AG236500 Rh1AG236600 Rh1BG206900 Rh1CG221000 Rh1CG221100 Rh2BG444800 Rh2BG444900 Rh2BG446600 Rh2BG446700 Rh2BG447600 Rh2BG448100 Rh2BG448400 Rh2BG448500 Rh2BG448700 Rh2BG448800 Rh2CG423500 Rh2CG423600 Rh2CG424800 Rh2CG424900 Rh2CG425100 Rh2CG425200 Rh2DG455200 Rh2DG455300 Rh2DG456900 Rh2DG457000 Rh2DG457100 Rh2DG457600 Rh2DG457900 Rh2DG458000 Rh2DG458300 Rh2DG458400 Rh4AG236100 Rh4AG236200 Rh4BG239200 Rh4CG250900 Rh4CG251100
rosa_wichuraiana Rw0G000400 Rw0G015990 Rw0G017200 Rw1G020580 Rw2G033310 Rw2G035630 Rw2G035640 Rw2G035790 Rw2G035800 Rw2G035840 Rw2G036160 Rw4G019830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 156, 386, 684
AclWI GGATC 1 cut(s) 511
AcsI RAATTY 1 cut(s) 265
AcuI CTGAAG 1 cut(s) 573
AdeI CACNNNGTG 1 cut(s) 363
AfaI GTAC 1 cut(s) 564
AfiI CCNNNNNNNGG 1 cut(s) 411
AgsI TTSAA 2 cut(s) 338, 643
AluBI AGCT 1 cut(s) 674
AluI AGCT 1 cut(s) 674
Alw26I GTCTC 4 cut(s) 37, 257, 390, 622
AlwI GGATC 1 cut(s) 511
AlwNI CAGNNNCTG 1 cut(s) 134
Ama87I CYCGRG 1 cut(s) 393
AoxI GGCC 1 cut(s) 200
ApeKI GCWGC 3 cut(s) 159, 305, 658
ApoI RAATTY 1 cut(s) 265
ArsI GACNNNNNNTTYG 2 cut(s) 158, 190
AsuHPI GGTGA 1 cut(s) 248
AsuNHI GCTAGC 1 cut(s) 308
AvaI CYCGRG 1 cut(s) 393
BaeGI GKGCMC 2 cut(s) 370, 517
BaeI ACNNNNGTAYC 2 cut(s) 15, 48
BarI GAAGNNNNNNTAC 2 cut(s) 546, 578
BbvI GCAGC 3 cut(s) 171, 292, 670
BceAI ACGGC 1 cut(s) 461
BciVI GTATCC 2 cut(s) 270, 400
BcoDI GTCTC 4 cut(s) 37, 257, 390, 622
BfaI CTAG 1 cut(s) 309
BfmI CTRYAG 1 cut(s) 178
BfuI GTATCC 2 cut(s) 270, 400
BisI GCNGC 4 cut(s) 157, 160, 306, 659
BlsI GCNGC 4 cut(s) 158, 161, 307, 660
BmeT110I CYCGRG 1 cut(s) 393
BmiI GGNNCC 1 cut(s) 115
BmtI GCTAGC 1 cut(s) 312
BoxI GACNNNNGTC 1 cut(s) 89
BplI GAGNNNNNCTC 2 cut(s) 602, 634
BpuEI CTTGAG 2 cut(s) 122, 622
BsaI GGTCTC 1 cut(s) 257
Bsc4I CCNNNNNNNGG 1 cut(s) 411
Bse3DI GCAATG 2 cut(s) 307, 319
BseGI GGATG 2 cut(s) 455, 679
BseLI CCNNNNNNNGG 1 cut(s) 411
BseMI GCAATG 2 cut(s) 307, 319
BseMII CTCAG 2 cut(s) 211, 317
BseRI GAGGAG 1 cut(s) 623
BseSI GKGCMC 2 cut(s) 370, 517
BseXI GCAGC 3 cut(s) 171, 292, 670
BshFI GGCC 1 cut(s) 202
BsiHKCI CYCGRG 1 cut(s) 393
BslFI GGGAC 2 cut(s) 77, 570
BslI CCNNNNNNNGG 1 cut(s) 411
BsmAI GTCTC 4 cut(s) 37, 257, 390, 622
BsmFI GGGAC 2 cut(s) 77, 570
BsnI GGCC 1 cut(s) 202
Bso31I GGTCTC 1 cut(s) 257
BsoBI CYCGRG 1 cut(s) 393
Bsp1286I GDGCHC 2 cut(s) 370, 517
Bsp143I GATC 2 cut(s) 329, 503
BspACI CCGC 3 cut(s) 156, 386, 684
BspANI GGCC 1 cut(s) 202
BspCNI CTCAG 2 cut(s) 210, 318
BspHI TCATGA 1 cut(s) 258
BspLI GGNNCC 1 cut(s) 115
BspOI GCTAGC 1 cut(s) 312
BspPI GGATC 1 cut(s) 511
BspTNI GGTCTC 1 cut(s) 257
BsrDI GCAATG 2 cut(s) 307, 319
BssMI GATC 2 cut(s) 329, 503
Bst4CI ACNGT 1 cut(s) 567
Bst6I CTCTTC 1 cut(s) 260
BstC8I GCNNGC 2 cut(s) 310, 663
BstDEI CTNAG 4 cut(s) 67, 197, 296, 326
BstF5I GGATG 2 cut(s) 455, 679
BstKTI GATC 3 cut(s) 332, 506, 717
BstMAI GTCTC 4 cut(s) 37, 257, 390, 622
BstMBI GATC 2 cut(s) 329, 503
BstMWI GCNNNNNNNGC 1 cut(s) 671
BstPAI GACNNNNGTC 1 cut(s) 89
BstSFI CTRYAG 1 cut(s) 178
BstSLI GKGCMC 2 cut(s) 370, 517
BstV1I GCAGC 3 cut(s) 171, 292, 670
BstXI CCANNNNNNTGG 1 cut(s) 628
BsuI GTATCC 2 cut(s) 270, 400
BsuRI GGCC 1 cut(s) 202
BtsCI GGATG 2 cut(s) 455, 679
BtsI GCAGTG 1 cut(s) 399
BtsIMutI CAGTG 3 cut(s) 25, 132, 399
Cac8I GCNNGC 2 cut(s) 310, 663
CaiI CAGNNNCTG 1 cut(s) 134
CciI TCATGA 1 cut(s) 258
Csp6I GTAC 1 cut(s) 563
CspCI CAANNNNNGTGG 2 cut(s) 448, 483
CviAII CATG 2 cut(s) 29, 259
CviJI RGCY 9 cut(s) 148, 162, 183, 202, 476, 551, 661, 665, 674
CviKI_1 RGCY 9 cut(s) 148, 162, 183, 202, 476, 551, 661, 665, 674
CviQI GTAC 1 cut(s) 563
DdeI CTNAG 4 cut(s) 67, 197, 296, 326
DpnI GATC 3 cut(s) 331, 505, 716
DpnII GATC 2 cut(s) 329, 503
DraIII CACNNNGTG 1 cut(s) 363
Eam1104I CTCTTC 1 cut(s) 260
EarI CTCTTC 1 cut(s) 260
Eco147I AGGCCT 1 cut(s) 202
Eco31I GGTCTC 1 cut(s) 257
Eco57I CTGAAG 1 cut(s) 573
Eco88I CYCGRG 1 cut(s) 393
EcoRI GAATTC 1 cut(s) 265
FaeI CATG 2 cut(s) 32, 262
FaqI GGGAC 2 cut(s) 77, 570
FatI CATG 2 cut(s) 28, 258
FauI CCCGC 1 cut(s) 691
Fnu4HI GCNGC 4 cut(s) 157, 160, 306, 659
FokI GGATG 2 cut(s) 442, 666
Fsp4HI GCNGC 4 cut(s) 157, 160, 306, 659
FspBI CTAG 1 cut(s) 309
GluI GCNGC 4 cut(s) 157, 160, 306, 659
HaeIII GGCC 1 cut(s) 202
Hin1II CATG 2 cut(s) 32, 262
HinfI GANTC 3 cut(s) 15, 347, 583
HphI GGTGA 1 cut(s) 248
Hpy188I TCNGA 3 cut(s) 221, 276, 327
Hpy188III TCNNGA 3 cut(s) 259, 393, 601
HpyAV CCTTC 3 cut(s) 71, 421, 462
HpyCH4III ACNGT 1 cut(s) 567
HpyCH4IV ACGT 1 cut(s) 590
HpyF10VI GCNNNNNNNGC 1 cut(s) 671
HpyF3I CTNAG 4 cut(s) 67, 197, 296, 326
HpySE526I ACGT 1 cut(s) 590
Hsp92II CATG 2 cut(s) 32, 262
Kzo9I GATC 2 cut(s) 329, 503
LpnPI CCDG 5 cut(s) 114, 184, 357, 520, 675
Lsp1109I GCAGC 3 cut(s) 171, 292, 670
MaeI CTAG 1 cut(s) 309
MaeII ACGT 1 cut(s) 590
MaeIII GTNAC 2 cut(s) 206, 236
MalI GATC 3 cut(s) 331, 505, 716
MboI GATC 2 cut(s) 329, 503
MboII GAAGA 2 cut(s) 247, 566
MhlI GDGCHC 2 cut(s) 370, 517
MluCI AATT 4 cut(s) 39, 123, 265, 626
MlyI GAGTC 1 cut(s) 592
MmeI TCCRAC 1 cut(s) 254
MnlI CCTC 5 cut(s) 194, 255, 361, 380, 601
MseI TTAA 2 cut(s) 45, 624
MslI CAYNNNNRTG 2 cut(s) 437, 593
MspA1I CMGCKG 1 cut(s) 686
MwoI GCNNNNNNNGC 1 cut(s) 671
NdeII GATC 2 cut(s) 329, 503
NheI GCTAGC 1 cut(s) 308
NlaIII CATG 2 cut(s) 32, 262
NlaIV GGNNCC 1 cut(s) 115
NmeAIII GCCGAG 1 cut(s) 124
NmuCI GTSAC 1 cut(s) 236
PagI TCATGA 1 cut(s) 258
PceI AGGCCT 1 cut(s) 202
PfeI GAWTC 2 cut(s) 15, 347
PkrI GCNGC 4 cut(s) 158, 161, 307, 660
PleI GAGTC 1 cut(s) 591
PpsI GAGTC 1 cut(s) 591
PshAI GACNNNNGTC 1 cut(s) 89
PspN4I GGNNCC 1 cut(s) 115
PstNI CAGNNNCTG 1 cut(s) 134
RsaI GTAC 1 cut(s) 564
RsaNI GTAC 1 cut(s) 563
RseI CAYNNNNRTG 2 cut(s) 437, 593
SaqAI TTAA 2 cut(s) 45, 624
SatI GCNGC 4 cut(s) 157, 160, 306, 659
Sau3AI GATC 2 cut(s) 329, 503
SchI GAGTC 1 cut(s) 592
SduI GDGCHC 2 cut(s) 370, 517
SetI ASST 7 cut(s) 141, 232, 249, 432, 467, 593, 676
SfcI CTRYAG 1 cut(s) 178
SmiMI CAYNNNNRTG 2 cut(s) 437, 593
SmlI CTYRAG 2 cut(s) 101, 601
SmoI CTYRAG 2 cut(s) 101, 601
Sse9I AATT 4 cut(s) 39, 123, 265, 626
SseBI AGGCCT 1 cut(s) 202
SsiI CCGC 3 cut(s) 156, 386, 684
SspMI CTAG 1 cut(s) 309
StuI AGGCCT 1 cut(s) 202
TaaI ACNGT 1 cut(s) 567
TaiI ACGT 1 cut(s) 593
TaqI TCGA 1 cut(s) 186
TasI AATT 4 cut(s) 39, 123, 265, 626
TatI WGTACW 1 cut(s) 562
TauI GCSGC 1 cut(s) 159
TfiI GAWTC 2 cut(s) 15, 347
Tru1I TTAA 2 cut(s) 45, 624
Tru9I TTAA 2 cut(s) 45, 624
TscAI CASTG 3 cut(s) 25, 139, 406
TseFI GTSAC 1 cut(s) 236
TseI GCWGC 3 cut(s) 159, 305, 658
Tsp45I GTSAC 1 cut(s) 236
TspDTI ATGAA 3 cut(s) 247, 444, 512
TspRI CASTG 3 cut(s) 25, 139, 406
XapI RAATTY 1 cut(s) 265
XspI CTAG 1 cut(s) 309
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.