Rmu_sc0019136.1_g000001
ERF Family

mTERF

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0019136.1
OG0000263
Physical Location & Seq
Reverse (-)
715 .. 1302
588 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0019136.1_g000001.1.cds

Sequence Viewer

Length: 588 bp
atgcccacatctctgacattgttaagaaatgcccagttttgcttgtatccaatgctgaaaagaccctttggccaaaactccagtttttcacttccattggcctttcgggcaatgaccttgcccggatcttccgtgtcaacttgcgttatcttgacattgagcttagagagaagtattagaccttgctatgatattatgaaaactctagaaatacctgagcataaggtcccttatttcattagcaactattatatgtttaaccccaaagtattgagcaatgtacctcacaacactttgattctgagagcgcatcaggtgccagaagcgtcatttcctctgtgggtgtgttctcatttgcttgcactgtcatttgactctgagaaggttaagacaaatgtcgagaaggtcatcagcatgggatttgacccttcgtctactacattcatgaaagctttgtatgtggtatcggtgaccaatgcagcaaagtggaaacacaagatggaattttatgagaagtggggttggactgaagatgatgtgttgttggcatttagaaagaatcccatgtttatgagcgcttcagtgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
mTERF

Protein Analysis

195

Amino Acids

22.32

Weight (kDa)

9.17

Isoelectric Point (pI)

48.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000263)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G21150 AT1G21150 AT1G21150
fragaria_vesca FvH4_4g17900 FvH4_6g26110 FvH4_6g33880 FvH4_6g33900 FvH4_6g34011 FvH4_6g34011 FvH4_6g34011 FvH4_6g34011 FvH4_6g34030 FvH4_6g34040 FvH4_6g34070 FvH4_6g34070 FvH4_7g12830
malus_domestica MD09G1189800.v1.1 MD09G1189900.v1.1 MD09G1190000.v1.1 MD14G1088800.v1.1 MD14G1088900.v1.1 MD17G1172900.v1.1
pyrus_communis pycom07g03460 pycom09g10650 pycom14g07860
rosa_chinensis RchiOBHm_Chr1g0351891 RchiOBHm_Chr1g0351901 RchiOBHm_Chr2g0143771 RchiOBHm_Chr2g0143861 RchiOBHm_Chr2g0143881 RchiOBHm_Chr2g0143941 RchiOBHm_Chr2g0143951 RchiOBHm_Chr2g0144081 RchiOBHm_Chr2g0144091 RchiOBHm_Chr2g0144211 RchiOBHm_Chr2g0144231 RchiOBHm_Chr2g0144241 RchiOBHm_Chr2g0144291 RchiOBHm_Chr2g0144301 RchiOBHm_Chr2g0144311 RchiOBHm_Chr2g0144331 RchiOBHm_Chr2g0144341 RchiOBHm_Chr4g0422021 RchiOBHm_Chr4g0422031
rosa_laevigata RLG00000007639 RLG00000020063 RLG00000020071 RLG00000020072 RLG00000020074
rosa_multiflora Rmu_co8214640.1_g000001 Rmu_co8471033.1_g000001 Rmu_sc0000789.1_g000002 Rmu_sc0001321.1_g000001 Rmu_sc0004340.1_g000001 Rmu_sc0004897.1_g000001 Rmu_sc0007105.1_g000005 Rmu_sc0009498.1_g000001 Rmu_sc0009498.1_g000002 Rmu_sc0019136.1_g000001 Rmu_sc0020327.1_g000002 Rmu_sc0020327.1_g000003 Rmu_sc0022905.1_g000001 Rmu_sc0032602.1_g000003 Rmu_sc0032602.1_g000004
rosa_roxburghii Rroxscaffold_2G00101380 Rroxscaffold_2G00101390 Rroxscaffold_2G00101400 Rroxscaffold_2G00101410 Rroxscaffold_2G00101480 Rroxscaffold_2G00101490 Rroxscaffold_4G00303470 Rroxscaffold_5G00364130 Rroxscaffold_5G00364150
rosa_rugosa Rorug01G0222600 Rorug02G0384700 Rorug02G0384800 Rorug02G0385800 Rorug02G0385900 Rorug02G0386000 Rorug02G0386000 Rorug02G0386100 Rorug04G0176700 Rorug04G0176800.1
rosa_samantha Rh1AG236500 Rh1AG236600 Rh1BG206900 Rh1CG221000 Rh1CG221100 Rh2BG444800 Rh2BG444900 Rh2BG446600 Rh2BG446700 Rh2BG447600 Rh2BG448100 Rh2BG448400 Rh2BG448500 Rh2BG448700 Rh2BG448800 Rh2CG423500 Rh2CG423600 Rh2CG424800 Rh2CG424900 Rh2CG425100 Rh2CG425200 Rh2DG455200 Rh2DG455300 Rh2DG456900 Rh2DG457000 Rh2DG457100 Rh2DG457600 Rh2DG457900 Rh2DG458000 Rh2DG458300 Rh2DG458400 Rh4AG236100 Rh4AG236200 Rh4BG239200 Rh4CG250900 Rh4CG251100
rosa_wichuraiana Rw0G000400 Rw0G015990 Rw0G017200 Rw1G020580 Rw2G033310 Rw2G035630 Rw2G035640 Rw2G035790 Rw2G035800 Rw2G035840 Rw2G036160 Rw4G019830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 316
AccI GTMKAC 1 cut(s) 434
AclWI GGATC 1 cut(s) 133
AcoI YGGCCR 1 cut(s) 70
AcsI RAATTY 1 cut(s) 503
AcuI CTGAAG 2 cut(s) 549, 564
AfaI GTAC 1 cut(s) 282
AfeI AGCGCT 1 cut(s) 577
AhdI GACNNNNNGTC 1 cut(s) 430
AluBI AGCT 2 cut(s) 162, 452
AluI AGCT 2 cut(s) 162, 452
AlwI GGATC 1 cut(s) 133
Aor51HI AGCGCT 1 cut(s) 577
AoxI GGCC 2 cut(s) 70, 99
ApeKI GCWGC 1 cut(s) 479
ApoI RAATTY 1 cut(s) 503
AspLEI GCGC 2 cut(s) 310, 578
AspS9I GGNCC 1 cut(s) 226
AsuC2I CCSGG 1 cut(s) 123
AsuHPI GGTGA 1 cut(s) 481
AvaII GGWCC 1 cut(s) 226
BalI TGGCCA 1 cut(s) 72
BanI GGYRCC 1 cut(s) 316
BbvI GCAGC 1 cut(s) 491
BccI CCATC 1 cut(s) 493
BciVI GTATCC 1 cut(s) 57
BcnI CCSGG 1 cut(s) 123
BfaI CTAG 1 cut(s) 206
BfoI RGCGCY 1 cut(s) 579
BfuI GTATCC 1 cut(s) 57
BglI GCCNNNNNGGC 1 cut(s) 107
BisI GCNGC 1 cut(s) 480
BlsI GCNGC 1 cut(s) 481
Bme1390I CCNGG 1 cut(s) 123
Bme18I GGWCC 1 cut(s) 226
BmeRI GACNNNNNGTC 1 cut(s) 430
BmgT120I GGNCC 1 cut(s) 226
BmiI GGNNCC 2 cut(s) 228, 318
BmrFI CCNGG 1 cut(s) 123
BmrI ACTGGG 1 cut(s) 28
BmsI GCATC 1 cut(s) 319
BmuI ACTGGG 1 cut(s) 28
BoxI GACNNNNGTC 1 cut(s) 395
BpmI CTGGAG 1 cut(s) 64
Bpu10I CCTNAGC 1 cut(s) 216
BpuMI CCSGG 1 cut(s) 123
Bse1I ACTGG 2 cut(s) 34, 81
Bse3DI GCAATG 2 cut(s) 117, 283
BseMI GCAATG 2 cut(s) 117, 283
BseMII CTCAG 3 cut(s) 207, 293, 369
BseNI ACTGG 2 cut(s) 34, 81
BseXI GCAGC 1 cut(s) 491
BshFI GGCC 2 cut(s) 72, 101
BshNI GGYRCC 1 cut(s) 316
BsiSI CCGG 1 cut(s) 123
BslFI GGGAC 1 cut(s) 212
BsmFI GGGAC 1 cut(s) 212
BsnI GGCC 2 cut(s) 72, 101
Bsp143I GATC 1 cut(s) 125
BspANI GGCC 2 cut(s) 72, 101
BspCNI CTCAG 3 cut(s) 208, 294, 370
BspHI TCATGA 1 cut(s) 444
BspLI GGNNCC 2 cut(s) 228, 318
BspPI GGATC 1 cut(s) 133
BspT107I GGYRCC 1 cut(s) 316
BsrDI GCAATG 2 cut(s) 117, 283
BsrI ACTGG 2 cut(s) 34, 81
BssMI GATC 1 cut(s) 125
Bst4CI ACNGT 1 cut(s) 366
BstAPI GCANNNNNTGC 1 cut(s) 316
BstC8I GCNNGC 1 cut(s) 360
BstDEI CTNAG 4 cut(s) 163, 216, 302, 378
BstEII GGTNACC 1 cut(s) 469
BstH2I RGCGCY 1 cut(s) 579
BstHHI GCGC 2 cut(s) 310, 578
BstKTI GATC 1 cut(s) 128
BstMBI GATC 1 cut(s) 125
BstMWI GCNNNNNNNGC 2 cut(s) 107, 316
BstPAI GACNNNNGTC 1 cut(s) 395
BstPI GGTNACC 1 cut(s) 469
BstSCI CCNGG 1 cut(s) 121
BstV1I GCAGC 1 cut(s) 491
BstX2I RGATCY 1 cut(s) 125
BstYI RGATCY 1 cut(s) 125
BsuI GTATCC 1 cut(s) 57
BsuRI GGCC 2 cut(s) 72, 101
BtsIMutI CAGTG 2 cut(s) 362, 588
Cac8I GCNNGC 1 cut(s) 360
CciI TCATGA 1 cut(s) 444
CfoI GCGC 2 cut(s) 310, 578
Cfr13I GGNCC 1 cut(s) 226
CseI GACGC 1 cut(s) 315
Csp6I GTAC 1 cut(s) 281
CviAII CATG 3 cut(s) 415, 445, 565
CviJI RGCY 4 cut(s) 72, 101, 162, 452
CviKI_1 RGCY 4 cut(s) 72, 101, 162, 452
CviQI GTAC 1 cut(s) 281
DdeI CTNAG 4 cut(s) 163, 216, 302, 378
DpnI GATC 1 cut(s) 127
DpnII GATC 1 cut(s) 125
DriI GACNNNNNGTC 1 cut(s) 430
EaeI YGGCCR 1 cut(s) 70
Eam1105I GACNNNNNGTC 1 cut(s) 430
Eco47I GGWCC 1 cut(s) 226
Eco47III AGCGCT 1 cut(s) 577
Eco57I CTGAAG 2 cut(s) 549, 564
Eco91I GGTNACC 1 cut(s) 469
EcoO109I RGGNCCY 1 cut(s) 226
EcoO65I GGTNACC 1 cut(s) 469
FaeI CATG 3 cut(s) 418, 448, 568
FaqI GGGAC 1 cut(s) 212
FatI CATG 3 cut(s) 414, 444, 564
FblI GTMKAC 1 cut(s) 434
Fnu4HI GCNGC 1 cut(s) 480
Fsp4HI GCNGC 1 cut(s) 480
FspBI CTAG 1 cut(s) 206
GlaI GCGC 2 cut(s) 309, 577
GluI GCNGC 1 cut(s) 480
GsuI CTGGAG 1 cut(s) 64
HaeII RGCGCY 1 cut(s) 579
HaeIII GGCC 2 cut(s) 72, 101
HapII CCGG 1 cut(s) 123
HgaI GACGC 1 cut(s) 315
HhaI GCGC 2 cut(s) 310, 578
Hin1II CATG 3 cut(s) 418, 448, 568
Hin6I GCGC 2 cut(s) 308, 576
HinP1I GCGC 2 cut(s) 308, 576
HincII GTYRAC 1 cut(s) 138
HindII GTYRAC 1 cut(s) 138
HindIII AAGCTT 1 cut(s) 450
HinfI GANTC 3 cut(s) 298, 374, 559
HpaII CCGG 1 cut(s) 123
HphI GGTGA 1 cut(s) 481
Hpy166II GTNNAC 2 cut(s) 138, 435
Hpy188I TCNGA 3 cut(s) 15, 303, 379
Hpy188III TCNNGA 4 cut(s) 151, 206, 400, 445
Hpy8I GTNNAC 2 cut(s) 138, 435
HpyAV CCTTC 3 cut(s) 376, 397, 438
HpyCH4III ACNGT 1 cut(s) 366
HpyCH4V TGCA 2 cut(s) 362, 479
HpyF10VI GCNNNNNNNGC 2 cut(s) 107, 316
HpyF3I CTNAG 4 cut(s) 163, 216, 302, 378
Hsp92II CATG 3 cut(s) 418, 448, 568
HspAI GCGC 2 cut(s) 308, 576
Kzo9I GATC 1 cut(s) 125
LpnPI CCDG 6 cut(s) 47, 94, 136, 228, 299, 333
Lsp1109I GCAGC 1 cut(s) 491
LweI GCATC 1 cut(s) 319
MaeI CTAG 1 cut(s) 206
MaeIII GTNAC 1 cut(s) 469
MalI GATC 1 cut(s) 127
MboI GATC 1 cut(s) 125
MboII GAAGA 2 cut(s) 120, 542
MflI RGATCY 1 cut(s) 125
MlsI TGGCCA 1 cut(s) 72
MluCI AATT 1 cut(s) 503
MluNI TGGCCA 1 cut(s) 72
MlyI GAGTC 1 cut(s) 368
MmeI TCCRAC 1 cut(s) 503
MnlI CCTC 2 cut(s) 294, 345
Mox20I TGGCCA 1 cut(s) 72
MscI TGGCCA 1 cut(s) 72
MseI TTAA 3 cut(s) 23, 258, 387
MslI CAYNNNNRTG 2 cut(s) 413, 569
Msp20I TGGCCA 1 cut(s) 72
MspI CCGG 1 cut(s) 123
MspR9I CCNGG 1 cut(s) 123
MwoI GCNNNNNNNGC 2 cut(s) 107, 316
NciI CCSGG 1 cut(s) 123
NdeII GATC 1 cut(s) 125
NlaIII CATG 3 cut(s) 418, 448, 568
NlaIV GGNNCC 2 cut(s) 228, 318
NmuCI GTSAC 1 cut(s) 469
PagI TCATGA 1 cut(s) 444
PfeI GAWTC 2 cut(s) 298, 559
PkrI GCNGC 1 cut(s) 481
PleI GAGTC 1 cut(s) 368
PpsI GAGTC 1 cut(s) 368
PpuMI RGGWCCY 1 cut(s) 226
PshAI GACNNNNGTC 1 cut(s) 395
Psp5II RGGWCCY 1 cut(s) 226
PspEI GGTNACC 1 cut(s) 469
PspN4I GGNNCC 2 cut(s) 228, 318
PspPI GGNCC 1 cut(s) 226
PspPPI RGGWCCY 1 cut(s) 226
PsuI RGATCY 1 cut(s) 125
RsaI GTAC 1 cut(s) 282
RsaNI GTAC 1 cut(s) 281
RseI CAYNNNNRTG 2 cut(s) 413, 569
SaqAI TTAA 3 cut(s) 23, 258, 387
SatI GCNGC 1 cut(s) 480
Sau3AI GATC 1 cut(s) 125
Sau96I GGNCC 1 cut(s) 226
SchI GAGTC 1 cut(s) 368
ScrFI CCNGG 1 cut(s) 123
SfaNI GCATC 1 cut(s) 319
SinI GGWCC 1 cut(s) 226
SmiMI CAYNNNNRTG 2 cut(s) 413, 569
Sse9I AATT 1 cut(s) 503
SspMI CTAG 1 cut(s) 206
StyD4I CCNGG 1 cut(s) 121
TaaI ACNGT 1 cut(s) 366
TaqI TCGA 1 cut(s) 399
TasI AATT 1 cut(s) 503
TfiI GAWTC 2 cut(s) 298, 559
Tru1I TTAA 3 cut(s) 23, 258, 387
Tru9I TTAA 3 cut(s) 23, 258, 387
TscAI CASTG 2 cut(s) 369, 588
TseFI GTSAC 1 cut(s) 469
TseI GCWGC 1 cut(s) 479
Tsp45I GTSAC 1 cut(s) 469
TspDTI ATGAA 4 cut(s) 212, 226, 433, 461
TspGWI ACGGA 1 cut(s) 121
TspRI CASTG 2 cut(s) 369, 588
VpaK11BI GGWCC 1 cut(s) 226
XapI RAATTY 1 cut(s) 503
XbaI TCTAGA 1 cut(s) 205
XmiI GTMKAC 1 cut(s) 434
XspI CTAG 1 cut(s) 206
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.