Rh2CG425200
ERF Family

mTERF

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0000263
Physical Location & Seq
Forward (+)
57903444 .. 57907303
3860 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG425200.1

Sequence Viewer

Length: 1161 bp
ATGTTTGGTTTTTGCTGTAGAAGATTTCAAGTTCAATTACTAGTTCCAAGTTTTCATTGCATTCAAAAGGAACGTCTTTTCAGCAGATTTTATTCATCAAAATCGCTAGTAGGTCCTCAAGGTACCTCTTTTACAGTTTCATACCTTATAAACTCATTTGGGTTCTCCCCAGAACTTGCTATCTCTTTGTCCAAGAAGCTGTGGGTACAGTTTGAATCCCCAGAAAAACCAGACTCTGTTATTAAGCTTCTGAAACACTACGGCCTCAATGGTACCCACGTCTCCGTAATGGTTAAGAAAGACCCAAGGCTGCTCTTATTCAAAGCTGAGAAGATCTTTCTGCCCAAGCTTGAGTTTTTCAGTTCCATGGGCATTTCAGGCACCGTCCTTGCTAGGCTCCTTTGTAACAACCCAAGAATCTTGGCATTAAGCTTAGAGAGAAGTCTCAGACCTTGTTATGATATCACCAAAACACTACGTATCCCCGATGAAAAGCTCGCATATTTCTTTAGTGACTTCAGGCGGACTACTTTCAAAAGATTGTGCATTGTTGCTCGCAATGTTCAAGTTCTGAGAGCACATGGTGTGCCACAATCCTCATTTCCTCTGTGGGTGCCCTTTTATTTTAATGCACTGTCCTATGACTCTGAGAGGGTCAAAGAAAATATTGACAAGGTCATCAGCATGGGATTCCGCCCTTCATCTGCCACATTCATGAGAGCACTGTTTGTGATATCAGTGACGGATGCATCAAAATGGGAACAGAAGATGGAATTTTATAGAAACTGGGGTCTGACTGAAGATGATGTGTTGTTGGCATTTAGAAAGAGTCCCTTGTTTATGTCCTTCAGTGAGAAGATTATATCCAGTAAAATGGATTTTTATGTGAATACAATGGGTTGGCAGCCCTCACATGTGGCTGGATGTCCAGATGTTCTAACCTATAGTTTGGAGAAGCGAATCATACCTAGGTGTTCAGTTATCAGACTTCTCCAGTTAGAGGGCTTAATCGCAAAGGAAGATGTATCTATAAGTACTATTCTGAAGACAAGCGAGAAGTGGTTCTTGGAAAGGTTTGTGATCAAATATCAAGAGCAAGTACCTGAATTGCTGACATCTTACAAAGAAAAATCAGTCTTGCAAAATTTGGCTTCGGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
mTERF

Protein Analysis

386

Amino Acids

44.61

Weight (kDa)

9.5

Isoelectric Point (pI)

44.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
mTERF PF02536 81 - 199 6.6e-11 mTERF
mTERF PF02536 188 - 355 3.8e-20 mTERF
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000263)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G21150 AT1G21150 AT1G21150
fragaria_vesca FvH4_4g17900 FvH4_6g26110 FvH4_6g33880 FvH4_6g33900 FvH4_6g34011 FvH4_6g34011 FvH4_6g34011 FvH4_6g34011 FvH4_6g34030 FvH4_6g34040 FvH4_6g34070 FvH4_6g34070 FvH4_7g12830
malus_domestica MD09G1189800.v1.1 MD09G1189900.v1.1 MD09G1190000.v1.1 MD14G1088800.v1.1 MD14G1088900.v1.1 MD17G1172900.v1.1
pyrus_communis pycom07g03460 pycom09g10650 pycom14g07860
rosa_chinensis RchiOBHm_Chr1g0351891 RchiOBHm_Chr1g0351901 RchiOBHm_Chr2g0143771 RchiOBHm_Chr2g0143861 RchiOBHm_Chr2g0143881 RchiOBHm_Chr2g0143941 RchiOBHm_Chr2g0143951 RchiOBHm_Chr2g0144081 RchiOBHm_Chr2g0144091 RchiOBHm_Chr2g0144211 RchiOBHm_Chr2g0144231 RchiOBHm_Chr2g0144241 RchiOBHm_Chr2g0144291 RchiOBHm_Chr2g0144301 RchiOBHm_Chr2g0144311 RchiOBHm_Chr2g0144331 RchiOBHm_Chr2g0144341 RchiOBHm_Chr4g0422021 RchiOBHm_Chr4g0422031
rosa_laevigata RLG00000007639 RLG00000020063 RLG00000020071 RLG00000020072 RLG00000020074
rosa_multiflora Rmu_co8214640.1_g000001 Rmu_co8471033.1_g000001 Rmu_sc0000789.1_g000002 Rmu_sc0001321.1_g000001 Rmu_sc0004340.1_g000001 Rmu_sc0004897.1_g000001 Rmu_sc0007105.1_g000005 Rmu_sc0009498.1_g000001 Rmu_sc0009498.1_g000002 Rmu_sc0019136.1_g000001 Rmu_sc0020327.1_g000002 Rmu_sc0020327.1_g000003 Rmu_sc0022905.1_g000001 Rmu_sc0032602.1_g000003 Rmu_sc0032602.1_g000004
rosa_roxburghii Rroxscaffold_2G00101380 Rroxscaffold_2G00101390 Rroxscaffold_2G00101400 Rroxscaffold_2G00101410 Rroxscaffold_2G00101480 Rroxscaffold_2G00101490 Rroxscaffold_4G00303470 Rroxscaffold_5G00364130 Rroxscaffold_5G00364150
rosa_rugosa Rorug01G0222600 Rorug02G0384700 Rorug02G0384800 Rorug02G0385800 Rorug02G0385900 Rorug02G0386000 Rorug02G0386000 Rorug02G0386100 Rorug04G0176700 Rorug04G0176800.1
rosa_samantha Rh1AG236500 Rh1AG236600 Rh1BG206900 Rh1CG221000 Rh1CG221100 Rh2BG444800 Rh2BG444900 Rh2BG446600 Rh2BG446700 Rh2BG447600 Rh2BG448100 Rh2BG448400 Rh2BG448500 Rh2BG448700 Rh2BG448800 Rh2CG423500 Rh2CG423600 Rh2CG424800 Rh2CG424900 Rh2CG425100 Rh2CG425200 Rh2DG455200 Rh2DG455300 Rh2DG456900 Rh2DG457000 Rh2DG457100 Rh2DG457600 Rh2DG457900 Rh2DG458000 Rh2DG458300 Rh2DG458400 Rh4AG236100 Rh4AG236200 Rh4BG239200 Rh4CG250900 Rh4CG251100
rosa_wichuraiana Rw0G000400 Rw0G015990 Rw0G017200 Rw1G020580 Rw2G033310 Rw2G035630 Rw2G035640 Rw2G035790 Rw2G035800 Rw2G035840 Rw2G036160 Rw4G019830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 149
Acc65I GGTACC 2 cut(s) 122, 272
AccB1I GGYRCC 4 cut(s) 122, 272, 380, 613
AciI CCGC 2 cut(s) 523, 694
AcsI RAATTY 2 cut(s) 773, 1144
AcuI CTGAAG 4 cut(s) 502, 819, 832, 1064
AdeI CACNNNGTG 1 cut(s) 584
AfaI GTAC 5 cut(s) 124, 207, 274, 1036, 1101
AfiI CCNNNNNNNGG 1 cut(s) 1000
AflIII ACRYGT 1 cut(s) 913
AgsI TTSAA 7 cut(s) 29, 35, 65, 215, 322, 535, 566
AhlI ACTAGT 1 cut(s) 40
AjiI CACGTC 1 cut(s) 280
AjuI GAANNNNNNNTTGG 2 cut(s) 1049, 1081
AluBI AGCT 6 cut(s) 199, 247, 326, 349, 432, 496
AluI AGCT 6 cut(s) 199, 247, 326, 349, 432, 496
Alw21I GWGCWC 2 cut(s) 580, 724
Alw26I GTCTC 2 cut(s) 286, 449
AlwNI CAGNNNCTG 1 cut(s) 236
AoxI GGCC 1 cut(s) 262
ApeKI GCWGC 2 cut(s) 310, 904
ApoI RAATTY 2 cut(s) 773, 1144
ArsI GACNNNNNNTTYG 2 cut(s) 58, 90
Asp700I GAANNNNTTC 1 cut(s) 1061
Asp718I GGTACC 2 cut(s) 122, 272
AspA2I CCTAGG 1 cut(s) 968
AspS9I GGNCC 1 cut(s) 113
AsuHPI GGTGA 1 cut(s) 457
AvaII GGWCC 1 cut(s) 113
AvrII CCTAGG 1 cut(s) 968
BaeGI GKGCMC 1 cut(s) 618
BaeI ACNNNNGTAYC 2 cut(s) 264, 297
BanI GGYRCC 4 cut(s) 122, 272, 380, 613
BbsI GAAGAC 1 cut(s) 1052
Bbv12I GWGCWC 2 cut(s) 580, 724
BbvI GCAGC 2 cut(s) 297, 916
BccI CCATC 1 cut(s) 763
BceAI ACGGC 1 cut(s) 277
BciVI GTATCC 1 cut(s) 491
BclI TGATCA 1 cut(s) 1080
BcoDI GTCTC 2 cut(s) 286, 449
BcuI ACTAGT 1 cut(s) 40
BfaI CTAG 4 cut(s) 41, 107, 393, 969
BfmI CTRYAG 2 cut(s) 16, 943
BfuI GTATCC 1 cut(s) 491
BglII AGATCT 1 cut(s) 333
BisI GCNGC 2 cut(s) 311, 905
BlnI CCTAGG 1 cut(s) 968
BlsI GCNGC 2 cut(s) 312, 906
BmcAI AGTACT 1 cut(s) 1036
Bme18I GGWCC 1 cut(s) 113
BmgBI CACGTC 1 cut(s) 280
BmgT120I GGNCC 1 cut(s) 113
BmiI GGNNCC 5 cut(s) 124, 274, 382, 398, 615
BmrI ACTGGG 1 cut(s) 796
BmsI GCATC 2 cut(s) 736, 758
BmuI ACTGGG 1 cut(s) 796
BpiI GAAGAC 1 cut(s) 1052
BpmI CTGGAG 1 cut(s) 977
BpuEI CTTGAG 2 cut(s) 102, 371
BsaAI YACGTR 1 cut(s) 479
BsaJI CCNNGG 3 cut(s) 305, 366, 968
Bsc4I CCNNNNNNNGG 1 cut(s) 1000
Bse1I ACTGG 3 cut(s) 791, 867, 994
Bse3DI GCAATG 2 cut(s) 55, 565
BseDI CCNNGG 3 cut(s) 305, 366, 968
BseGI GGATG 2 cut(s) 751, 929
BseLI CCNNNNNNNGG 1 cut(s) 1000
BseMI GCAATG 2 cut(s) 55, 565
BseMII CTCAG 4 cut(s) 318, 460, 563, 639
BseNI ACTGG 3 cut(s) 791, 867, 994
BseSI GKGCMC 1 cut(s) 618
BseXI GCAGC 2 cut(s) 297, 916
BshFI GGCC 1 cut(s) 264
BshNI GGYRCC 4 cut(s) 122, 272, 380, 613
BsiHKAI GWGCWC 2 cut(s) 580, 724
BslFI GGGAC 1 cut(s) 816
BslI CCNNNNNNNGG 1 cut(s) 1000
BsmAI GTCTC 2 cut(s) 286, 449
BsmBI CGTCTC 1 cut(s) 286
BsmFI GGGAC 1 cut(s) 816
BsmI GAATGC 1 cut(s) 60
BsnI GGCC 1 cut(s) 264
Bsp1286I GDGCHC 3 cut(s) 580, 618, 724
Bsp143I GATC 2 cut(s) 333, 1080
Bsp19I CCATGG 1 cut(s) 366
BspACI CCGC 2 cut(s) 523, 694
BspANI GGCC 1 cut(s) 264
BspCNI CTCAG 4 cut(s) 319, 459, 564, 640
BspHI TCATGA 1 cut(s) 714
BspLI GGNNCC 5 cut(s) 124, 274, 382, 398, 615
BspT107I GGYRCC 4 cut(s) 122, 272, 380, 613
BsrDI GCAATG 2 cut(s) 55, 565
BsrI ACTGG 3 cut(s) 791, 867, 994
BssECI CCNNGG 3 cut(s) 305, 366, 968
BssMI GATC 2 cut(s) 333, 1080
BssT1I CCWWGG 3 cut(s) 305, 366, 968
Bst4CI ACNGT 5 cut(s) 136, 210, 385, 636, 726
BstBAI YACGTR 1 cut(s) 479
BstC8I GCNNGC 2 cut(s) 498, 556
BstDEI CTNAG 5 cut(s) 327, 433, 446, 572, 648
BstDSI CCRYGG 1 cut(s) 366
BstF5I GGATG 2 cut(s) 751, 929
BstKTI GATC 2 cut(s) 336, 1083
BstMAI GTCTC 2 cut(s) 286, 449
BstMBI GATC 2 cut(s) 333, 1080
BstMWI GCNNNNNNNGC 1 cut(s) 378
BstNSI RCATGY 1 cut(s) 917
BstSFI CTRYAG 2 cut(s) 16, 943
BstSLI GKGCMC 1 cut(s) 618
BstSNI TACGTA 1 cut(s) 479
BstV1I GCAGC 2 cut(s) 297, 916
BstV2I GAAGAC 1 cut(s) 1052
BstX2I RGATCY 1 cut(s) 333
BstXI CCANNNNNNTGG 1 cut(s) 874
BstYI RGATCY 1 cut(s) 333
BsuI GTATCC 1 cut(s) 491
BsuRI GGCC 1 cut(s) 264
BtgI CCRYGG 1 cut(s) 366
BtrI CACGTC 1 cut(s) 280
BtsCI GGATG 2 cut(s) 751, 929
BtsIMutI CAGTG 4 cut(s) 632, 722, 744, 856
Cac8I GCNNGC 2 cut(s) 498, 556
CaiI CAGNNNCTG 1 cut(s) 236
CciI TCATGA 1 cut(s) 714
Cfr13I GGNCC 1 cut(s) 113
Csp6I GTAC 5 cut(s) 123, 206, 273, 1035, 1100
CviAII CATG 5 cut(s) 367, 581, 685, 715, 914
CviQI GTAC 5 cut(s) 123, 206, 273, 1035, 1100
DdeI CTNAG 5 cut(s) 327, 433, 446, 572, 648
DpnI GATC 2 cut(s) 335, 1082
DpnII GATC 2 cut(s) 333, 1080
DraIII CACNNNGTG 1 cut(s) 584
EciI GGCGGA 2 cut(s) 538, 683
Eco105I TACGTA 1 cut(s) 479
Eco130I CCWWGG 3 cut(s) 305, 366, 968
Eco32I GATATC 2 cut(s) 463, 735
Eco47I GGWCC 1 cut(s) 113
Eco57I CTGAAG 4 cut(s) 502, 819, 832, 1064
EcoO109I RGGNCCY 1 cut(s) 113
EcoRV GATATC 2 cut(s) 463, 735
EcoT14I CCWWGG 3 cut(s) 305, 366, 968
EcoT22I ATGCAT 1 cut(s) 751
ErhI CCWWGG 3 cut(s) 305, 366, 968
Esp3I CGTCTC 1 cut(s) 286
FaeI CATG 5 cut(s) 370, 584, 688, 718, 917
FalI AAGNNNNNCTT 4 cut(s) 818, 850, 1049, 1081
FaqI GGGAC 1 cut(s) 816
FatI CATG 5 cut(s) 366, 580, 684, 714, 913
FbaI TGATCA 1 cut(s) 1080
Fnu4HI GCNGC 2 cut(s) 311, 905
FokI GGATG 2 cut(s) 758, 936
Fsp4HI GCNGC 2 cut(s) 311, 905
FspBI CTAG 4 cut(s) 41, 107, 393, 969
GluI GCNGC 2 cut(s) 311, 905
GsuI CTGGAG 1 cut(s) 977
HaeIII GGCC 1 cut(s) 264
Hin1II CATG 5 cut(s) 370, 584, 688, 718, 917
HindIII AAGCTT 3 cut(s) 245, 347, 430
HinfI GANTC 7 cut(s) 215, 233, 417, 644, 690, 829, 960
HphI GGTGA 1 cut(s) 457
Hpy188I TCNGA 8 cut(s) 252, 449, 573, 649, 795, 986, 1044, 1156
Hpy188III TCNNGA 3 cut(s) 715, 929, 1091
HpyAV CCTTC 2 cut(s) 708, 856
HpyCH4III ACNGT 5 cut(s) 136, 210, 385, 636, 726
HpyCH4IV ACGT 3 cut(s) 73, 279, 478
HpyCH4V TGCA 5 cut(s) 60, 546, 632, 749, 1141
HpyF10VI GCNNNNNNNGC 1 cut(s) 378
HpyF3I CTNAG 5 cut(s) 327, 433, 446, 572, 648
HpySE526I ACGT 3 cut(s) 73, 279, 478
Hsp92II CATG 5 cut(s) 370, 584, 688, 718, 917
KpnI GGTACC 2 cut(s) 126, 276
Ksp22I TGATCA 1 cut(s) 1080
Kzo9I GATC 2 cut(s) 333, 1080
LmnI GCTCC 1 cut(s) 402
Lsp1109I GCAGC 2 cut(s) 297, 916
LweI GCATC 2 cut(s) 736, 758
MaeI CTAG 4 cut(s) 41, 107, 393, 969
MaeII ACGT 3 cut(s) 73, 279, 478
MaeIII GTNAC 3 cut(s) 404, 512, 739
MalI GATC 2 cut(s) 335, 1082
MboI GATC 2 cut(s) 333, 1080
MboII GAAGA 7 cut(s) 33, 343, 778, 812, 868, 1031, 1057
MflI RGATCY 1 cut(s) 333
MhlI GDGCHC 3 cut(s) 580, 618, 724
MluCI AATT 4 cut(s) 35, 773, 1106, 1144
MlyI GAGTC 3 cut(s) 227, 638, 838
MnlI CCTC 8 cut(s) 126, 136, 275, 607, 615, 645, 919, 994
Mph1103I ATGCAT 1 cut(s) 751
MroXI GAANNNNTTC 1 cut(s) 1061
MseI TTAA 5 cut(s) 243, 294, 428, 627, 1007
MslI CAYNNNNRTG 3 cut(s) 683, 713, 754
Mva1269I GAATGC 1 cut(s) 60
MwoI GCNNNNNNNGC 1 cut(s) 378
NcoI CCATGG 1 cut(s) 366
NdeII GATC 2 cut(s) 333, 1080
NlaIII CATG 5 cut(s) 370, 584, 688, 718, 917
NlaIV GGNNCC 5 cut(s) 124, 274, 382, 398, 615
NmuCI GTSAC 2 cut(s) 512, 739
NsiI ATGCAT 1 cut(s) 751
NspI RCATGY 1 cut(s) 917
PagI TCATGA 1 cut(s) 714
PciI ACATGT 1 cut(s) 913
PctI GAATGC 1 cut(s) 60
PdmI GAANNNNTTC 1 cut(s) 1061
PfeI GAWTC 4 cut(s) 215, 417, 690, 960
PflFI GACNNNGTC 1 cut(s) 674
PkrI GCNGC 2 cut(s) 312, 906
PleI GAGTC 3 cut(s) 227, 638, 837
PpsI GAGTC 3 cut(s) 227, 638, 837
Ppu21I YACGTR 1 cut(s) 479
PpuMI RGGWCCY 1 cut(s) 113
PscI ACATGT 1 cut(s) 913
PsiI TTATAA 1 cut(s) 149
Psp5II RGGWCCY 1 cut(s) 113
PspN4I GGNNCC 5 cut(s) 124, 274, 382, 398, 615
PspPI GGNCC 1 cut(s) 113
PspPPI RGGWCCY 1 cut(s) 113
PstNI CAGNNNCTG 1 cut(s) 236
PsuI RGATCY 1 cut(s) 333
PsyI GACNNNGTC 1 cut(s) 674
RsaI GTAC 5 cut(s) 124, 207, 274, 1036, 1101
RsaNI GTAC 5 cut(s) 123, 206, 273, 1035, 1100
RseI CAYNNNNRTG 3 cut(s) 683, 713, 754
SaqAI TTAA 5 cut(s) 243, 294, 428, 627, 1007
SatI GCNGC 2 cut(s) 311, 905
Sau3AI GATC 2 cut(s) 333, 1080
Sau96I GGNCC 1 cut(s) 113
ScaI AGTACT 1 cut(s) 1036
SchI GAGTC 3 cut(s) 227, 638, 838
SduI GDGCHC 3 cut(s) 580, 618, 724
SfaNI GCATC 2 cut(s) 736, 758
SfcI CTRYAG 2 cut(s) 16, 943
SinI GGWCC 1 cut(s) 113
SmiMI CAYNNNNRTG 3 cut(s) 683, 713, 754
SmlI CTYRAG 2 cut(s) 117, 350
SmoI CTYRAG 2 cut(s) 117, 350
SnaBI TACGTA 1 cut(s) 479
SpeI ACTAGT 1 cut(s) 40
Sse9I AATT 4 cut(s) 35, 773, 1106, 1144
SsiI CCGC 2 cut(s) 523, 694
SspI AATATT 1 cut(s) 667
SspMI CTAG 4 cut(s) 41, 107, 393, 969
StyI CCWWGG 3 cut(s) 305, 366, 968
TaaI ACNGT 5 cut(s) 136, 210, 385, 636, 726
TaiI ACGT 3 cut(s) 76, 282, 481
TasI AATT 4 cut(s) 35, 773, 1106, 1144
TatI WGTACW 1 cut(s) 1034
TfiI GAWTC 4 cut(s) 215, 417, 690, 960
Tru1I TTAA 5 cut(s) 243, 294, 428, 627, 1007
Tru9I TTAA 5 cut(s) 243, 294, 428, 627, 1007
TscAI CASTG 4 cut(s) 639, 729, 744, 856
TseFI GTSAC 2 cut(s) 512, 739
TseI GCWGC 2 cut(s) 310, 904
Tsp45I GTSAC 2 cut(s) 512, 739
TspDTI ATGAA 6 cut(s) 44, 84, 129, 504, 690, 703
TspGWI ACGGA 2 cut(s) 274, 758
TspRI CASTG 4 cut(s) 639, 729, 744, 856
Tth111I GACNNNGTC 1 cut(s) 674
VpaK11BI GGWCC 1 cut(s) 113
XapI RAATTY 2 cut(s) 773, 1144
XceI RCATGY 1 cut(s) 917
XmaJI CCTAGG 1 cut(s) 968
XmnI GAANNNNTTC 1 cut(s) 1061
XspI CTAG 4 cut(s) 41, 107, 393, 969
ZrmI AGTACT 1 cut(s) 1036
Zsp2I ATGCAT 1 cut(s) 751
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.