FvH4_6g34030
ERF Family

mTERF

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000263
Physical Location & Seq
Forward (+)
26912923 .. 26915145
2223 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g34030.t1

Sequence Viewer

Length: 1185 bp
ATGTTTGGTTTTTGCTGTAAAAGATTGCAATTACTGTTTCCAAGTTGTAGCATTGCTGTTGATTCTTCTTCAGTCACCCATGTTCATTTTACAAGATTATATGCATCAAAATCATTGTTAGGAAGTACCCAAGATGAAAAATCTCGATCCTTTACAGTTTCATACCTTGTAAACTCACATGGGTTCTCCCCAGAAAAGGCTCTCTCTGCCTCCAAGAATAAGAAGCTACACTTTGACACCCCAGAACAACCAGACTCTGTTGTTAAGCTTCTCAAACACTATGGACTCACTGATACCCACATCTCTAACATTGTTAAGACCTTGCCAGTTCTGCTTGTATACAATGCTGAAAAGACCCTTTGCCCCAAACTCCAGTTTTTCTGTTCTGTTGGCCTTTCGAGCAATGACCTTGCCCGGATTTTGCGTTTCAATGCAAATATCTTGACATGGAGCTTAGAGAGAAGTATTAGACCTTGTTATGATATCATGAAGACTCTAGGAATACCTAAGCACAAGGTCCCTGATTTCATTAGCAACTATCATATGTTTAACCTCAAAGTAATGAGCAATGTTGCTCACAATACTTCGATTCTGAGAGCGCATCAGCTGCCAGAATCCTCATTTCCTCTGTGGGTGTCCTTTTATTTCAAAGCACTGTCCTTTGACTCTGAGAAGGTCAAACAGAATGTTAAGAAAGTTATGAGCATGGGATTCCAGCCTTCATCTAGCACATTCATGAAAGCTTTGTATGTGATATCAGTGACGGATGCATCAAAATGGGAACACAAGATGAAATTTTATAAGATGTGGGGTTGGACTGAAGATGATGTATTGTCGGCGTTTAGAAAGACCCCCCTGTTTATGACCTTCTGTGAGAAGAATATTTCAGCTAAAATGGATTTTCTTTTGAACAAATGGGGTTGCCAGCCTGCAGATCTGGCTGCACGTCCAGATCTTTTGACTTATAGTTTGGAGAAGCGAATTATACCTAGGTGTTCAGTTGTCAGAGTTCTCCAGTTAAAGGGCTTAGTTAAGGAAGATACATCTATGGCTACCATTGTGCACGAAACAGAGAAGTTCTTCTTGGAACAGTTTGTGATCAAATATCAAGAACAGGTACCTGAATTGCTGAGCATCTTACAAAGGAAAATGGATCTTGCAGAATTTGGTTTAAGATTCAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
mTERF

Protein Analysis

395

Amino Acids

45.26

Weight (kDa)

9.36

Isoelectric Point (pI)

50.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
mTERF PF02536 88 - 199 4.6e-14 mTERF
mTERF PF02536 219 - 361 2.8e-14 mTERF
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000263)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G21150 AT1G21150 AT1G21150
fragaria_vesca FvH4_4g17900 FvH4_6g26110 FvH4_6g33880 FvH4_6g33900 FvH4_6g34011 FvH4_6g34011 FvH4_6g34011 FvH4_6g34011 FvH4_6g34030 FvH4_6g34040 FvH4_6g34070 FvH4_6g34070 FvH4_7g12830
malus_domestica MD09G1189800.v1.1 MD09G1189900.v1.1 MD09G1190000.v1.1 MD14G1088800.v1.1 MD14G1088900.v1.1 MD17G1172900.v1.1
pyrus_communis pycom07g03460 pycom09g10650 pycom14g07860
rosa_chinensis RchiOBHm_Chr1g0351891 RchiOBHm_Chr1g0351901 RchiOBHm_Chr2g0143771 RchiOBHm_Chr2g0143861 RchiOBHm_Chr2g0143881 RchiOBHm_Chr2g0143941 RchiOBHm_Chr2g0143951 RchiOBHm_Chr2g0144081 RchiOBHm_Chr2g0144091 RchiOBHm_Chr2g0144211 RchiOBHm_Chr2g0144231 RchiOBHm_Chr2g0144241 RchiOBHm_Chr2g0144291 RchiOBHm_Chr2g0144301 RchiOBHm_Chr2g0144311 RchiOBHm_Chr2g0144331 RchiOBHm_Chr2g0144341 RchiOBHm_Chr4g0422021 RchiOBHm_Chr4g0422031
rosa_laevigata RLG00000007639 RLG00000020063 RLG00000020071 RLG00000020072 RLG00000020074
rosa_multiflora Rmu_co8214640.1_g000001 Rmu_co8471033.1_g000001 Rmu_sc0000789.1_g000002 Rmu_sc0001321.1_g000001 Rmu_sc0004340.1_g000001 Rmu_sc0004897.1_g000001 Rmu_sc0007105.1_g000005 Rmu_sc0009498.1_g000001 Rmu_sc0009498.1_g000002 Rmu_sc0019136.1_g000001 Rmu_sc0020327.1_g000002 Rmu_sc0020327.1_g000003 Rmu_sc0022905.1_g000001 Rmu_sc0032602.1_g000003 Rmu_sc0032602.1_g000004
rosa_roxburghii Rroxscaffold_2G00101380 Rroxscaffold_2G00101390 Rroxscaffold_2G00101400 Rroxscaffold_2G00101410 Rroxscaffold_2G00101480 Rroxscaffold_2G00101490 Rroxscaffold_4G00303470 Rroxscaffold_5G00364130 Rroxscaffold_5G00364150
rosa_rugosa Rorug01G0222600 Rorug02G0384700 Rorug02G0384800 Rorug02G0385800 Rorug02G0385900 Rorug02G0386000 Rorug02G0386000 Rorug02G0386100 Rorug04G0176700 Rorug04G0176800.1
rosa_samantha Rh1AG236500 Rh1AG236600 Rh1BG206900 Rh1CG221000 Rh1CG221100 Rh2BG444800 Rh2BG444900 Rh2BG446600 Rh2BG446700 Rh2BG447600 Rh2BG448100 Rh2BG448400 Rh2BG448500 Rh2BG448700 Rh2BG448800 Rh2CG423500 Rh2CG423600 Rh2CG424800 Rh2CG424900 Rh2CG425100 Rh2CG425200 Rh2DG455200 Rh2DG455300 Rh2DG456900 Rh2DG457000 Rh2DG457100 Rh2DG457600 Rh2DG457900 Rh2DG458000 Rh2DG458300 Rh2DG458400 Rh4AG236100 Rh4AG236200 Rh4BG239200 Rh4CG250900 Rh4CG251100
rosa_wichuraiana Rw0G000400 Rw0G015990 Rw0G017200 Rw1G020580 Rw2G033310 Rw2G035630 Rw2G035640 Rw2G035790 Rw2G035800 Rw2G035840 Rw2G036160 Rw4G019830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 801
Acc65I GGTACC 1 cut(s) 1117
AccB1I GGYRCC 1 cut(s) 1117
AccI GTMKAC 1 cut(s) 339
AclWI GGATC 2 cut(s) 141, 1161
AcsI RAATTY 2 cut(s) 794, 1163
AcuI CTGAAG 2 cut(s) 54, 840
AfaI GTAC 2 cut(s) 127, 1119
AfiI CCNNNNNNNGG 2 cut(s) 196, 1021
AgsI TTSAA 4 cut(s) 430, 649, 910, 1180
AjiI CACGTC 1 cut(s) 947
AjuI GAANNNNNNNTTGG 2 cut(s) 1067, 1099
AluBI AGCT 6 cut(s) 226, 268, 453, 607, 743, 890
AluI AGCT 6 cut(s) 226, 268, 453, 607, 743, 890
Alw21I GWGCWC 1 cut(s) 1065
Alw44I GTGCAC 1 cut(s) 1061
AlwI GGATC 2 cut(s) 141, 1161
AlwNI CAGNNNCTG 1 cut(s) 257
AoxI GGCC 1 cut(s) 391
ApaLI GTGCAC 1 cut(s) 1061
ApeKI GCWGC 2 cut(s) 607, 941
ApoI RAATTY 2 cut(s) 794, 1163
ArsI GACNNNNNNTTYG 2 cut(s) 952, 984
Asp700I GAANNNNTTC 1 cut(s) 1079
Asp718I GGTACC 1 cut(s) 1117
AspA2I CCTAGG 1 cut(s) 989
AspLEI GCGC 1 cut(s) 601
AspS9I GGNCC 1 cut(s) 517
AsuC2I CCSGG 1 cut(s) 415
AsuHPI GGTGA 1 cut(s) 67
AvaII GGWCC 1 cut(s) 517
AvrII CCTAGG 1 cut(s) 989
BaeGI GKGCMC 1 cut(s) 1065
BanI GGYRCC 1 cut(s) 1117
BbsI GAAGAC 1 cut(s) 497
Bbv12I GWGCWC 1 cut(s) 1065
BbvI GCAGC 2 cut(s) 594, 928
BclI TGATCA 1 cut(s) 1098
BcnI CCSGG 1 cut(s) 415
BfaI CTAG 3 cut(s) 497, 726, 990
BfmI CTRYAG 1 cut(s) 930
BglII AGATCT 2 cut(s) 934, 952
BisI GCNGC 2 cut(s) 608, 942
BlnI CCTAGG 1 cut(s) 989
BlpI GCTNAGC 1 cut(s) 1130
BlsI GCNGC 2 cut(s) 609, 943
Bme1390I CCNGG 1 cut(s) 415
Bme18I GGWCC 1 cut(s) 517
BmgBI CACGTC 1 cut(s) 947
BmgT120I GGNCC 1 cut(s) 517
BmiI GGNNCC 2 cut(s) 519, 1119
BmrFI CCNGG 1 cut(s) 415
BmsI GCATC 5 cut(s) 113, 610, 757, 779, 1143
BpiI GAAGAC 1 cut(s) 497
BpmI CTGGAG 2 cut(s) 356, 998
Bpu10I CCTNAGC 1 cut(s) 507
Bpu1102I GCTNAGC 1 cut(s) 1130
BpuMI CCSGG 1 cut(s) 415
BsaJI CCNNGG 1 cut(s) 989
Bsc4I CCNNNNNNNGG 2 cut(s) 196, 1021
Bse1I ACTGG 3 cut(s) 326, 373, 1015
Bse3DI GCAATG 3 cut(s) 51, 409, 574
BseDI CCNNGG 1 cut(s) 989
BseGI GGATG 1 cut(s) 772
BseLI CCNNNNNNNGG 2 cut(s) 196, 1021
BseMI GCAATG 3 cut(s) 51, 409, 574
BseMII CTCAG 3 cut(s) 584, 660, 1121
BseNI ACTGG 3 cut(s) 326, 373, 1015
BseSI GKGCMC 1 cut(s) 1065
BseXI GCAGC 2 cut(s) 594, 928
BsgI GTGCAG 1 cut(s) 927
BshFI GGCC 1 cut(s) 393
BshNI GGYRCC 1 cut(s) 1117
BsiHKAI GWGCWC 1 cut(s) 1065
BsiSI CCGG 1 cut(s) 415
BslFI GGGAC 1 cut(s) 503
BslI CCNNNNNNNGG 2 cut(s) 196, 1021
BsmFI GGGAC 1 cut(s) 503
BsnI GGCC 1 cut(s) 393
Bsp1286I GDGCHC 1 cut(s) 1065
Bsp143I GATC 5 cut(s) 146, 934, 952, 1098, 1153
Bsp1720I GCTNAGC 1 cut(s) 1130
BspANI GGCC 1 cut(s) 393
BspCNI CTCAG 3 cut(s) 585, 661, 1122
BspHI TCATGA 2 cut(s) 486, 735
BspLI GGNNCC 2 cut(s) 519, 1119
BspMAI CTGCAG 1 cut(s) 934
BspPI GGATC 2 cut(s) 141, 1161
BspT107I GGYRCC 1 cut(s) 1117
BsrDI GCAATG 3 cut(s) 51, 409, 574
BsrI ACTGG 3 cut(s) 326, 373, 1015
BssECI CCNNGG 1 cut(s) 989
BssMI GATC 5 cut(s) 146, 934, 952, 1098, 1153
BssNAI GTATAC 1 cut(s) 340
BssT1I CCWWGG 1 cut(s) 989
Bst1107I GTATAC 1 cut(s) 340
Bst4CI ACNGT 4 cut(s) 36, 157, 657, 1092
BstAPI GCANNNNNTGC 1 cut(s) 607
BstC8I GCNNGC 2 cut(s) 926, 930
BstDEI CTNAG 6 cut(s) 454, 507, 593, 669, 1027, 1130
BstF5I GGATG 1 cut(s) 772
BstHHI GCGC 1 cut(s) 601
BstKTI GATC 5 cut(s) 149, 937, 955, 1101, 1156
BstMBI GATC 5 cut(s) 146, 934, 952, 1098, 1153
BstMWI GCNNNNNNNGC 5 cut(s) 206, 331, 399, 607, 938
BstSCI CCNGG 1 cut(s) 413
BstSFI CTRYAG 1 cut(s) 930
BstSLI GKGCMC 1 cut(s) 1065
BstV1I GCAGC 2 cut(s) 594, 928
BstV2I GAAGAC 1 cut(s) 497
BstX2I RGATCY 3 cut(s) 934, 952, 1153
BstYI RGATCY 3 cut(s) 934, 952, 1153
BstZ17I GTATAC 1 cut(s) 340
BsuRI GGCC 1 cut(s) 393
BtrI CACGTC 1 cut(s) 947
BtsCI GGATG 1 cut(s) 772
BtsIMutI CAGTG 3 cut(s) 288, 653, 765
Cac8I GCNNGC 2 cut(s) 926, 930
CaiI CAGNNNCTG 1 cut(s) 257
CciI TCATGA 2 cut(s) 486, 735
CfoI GCGC 1 cut(s) 601
Cfr13I GGNCC 1 cut(s) 517
Csp6I GTAC 2 cut(s) 126, 1118
CviAII CATG 6 cut(s) 80, 179, 447, 487, 706, 736
CviQI GTAC 2 cut(s) 126, 1118
DdeI CTNAG 6 cut(s) 454, 507, 593, 669, 1027, 1130
DpnI GATC 5 cut(s) 148, 936, 954, 1100, 1155
DpnII GATC 5 cut(s) 146, 934, 952, 1098, 1153
Eco130I CCWWGG 1 cut(s) 989
Eco32I GATATC 2 cut(s) 484, 756
Eco47I GGWCC 1 cut(s) 517
Eco57I CTGAAG 2 cut(s) 54, 840
EcoO109I RGGNCCY 1 cut(s) 517
EcoRV GATATC 2 cut(s) 484, 756
EcoT14I CCWWGG 1 cut(s) 989
EcoT22I ATGCAT 2 cut(s) 106, 772
ErhI CCWWGG 1 cut(s) 989
FaeI CATG 6 cut(s) 83, 182, 450, 490, 709, 739
FalI AAGNNNNNCTT 4 cut(s) 215, 247, 1067, 1099
FaqI GGGAC 1 cut(s) 503
FatI CATG 6 cut(s) 79, 178, 446, 486, 705, 735
FauNDI CATATG 1 cut(s) 543
FbaI TGATCA 1 cut(s) 1098
FblI GTMKAC 1 cut(s) 339
Fnu4HI GCNGC 2 cut(s) 608, 942
FokI GGATG 1 cut(s) 779
Fsp4HI GCNGC 2 cut(s) 608, 942
FspBI CTAG 3 cut(s) 497, 726, 990
GlaI GCGC 1 cut(s) 600
GluI GCNGC 2 cut(s) 608, 942
GsuI CTGGAG 2 cut(s) 356, 998
HaeIII GGCC 1 cut(s) 393
HapII CCGG 1 cut(s) 415
HhaI GCGC 1 cut(s) 601
Hin1II CATG 6 cut(s) 83, 182, 450, 490, 709, 739
Hin6I GCGC 1 cut(s) 599
HinP1I GCGC 1 cut(s) 599
HindIII AAGCTT 2 cut(s) 266, 741
HinfI GANTC 9 cut(s) 62, 254, 285, 493, 589, 614, 665, 711, 1176
HpaII CCGG 1 cut(s) 415
HphI GGTGA 1 cut(s) 67
Hpy166II GTNNAC 3 cut(s) 172, 340, 1063
Hpy188I TCNGA 3 cut(s) 594, 670, 1007
Hpy188III TCNNGA 6 cut(s) 144, 442, 487, 736, 950, 1109
Hpy8I GTNNAC 3 cut(s) 172, 340, 1063
HpyAV CCTTC 3 cut(s) 667, 729, 877
HpyCH4III ACNGT 4 cut(s) 36, 157, 657, 1092
HpyCH4IV ACGT 1 cut(s) 946
HpyCH4V TGCA 8 cut(s) 28, 104, 434, 770, 932, 944, 1063, 1160
HpyF10VI GCNNNNNNNGC 5 cut(s) 206, 331, 399, 607, 938
HpyF3I CTNAG 6 cut(s) 454, 507, 593, 669, 1027, 1130
HpySE526I ACGT 1 cut(s) 946
Hsp92II CATG 6 cut(s) 83, 182, 450, 490, 709, 739
HspAI GCGC 1 cut(s) 599
KpnI GGTACC 1 cut(s) 1121
Ksp22I TGATCA 1 cut(s) 1098
Kzo9I GATC 5 cut(s) 146, 934, 952, 1098, 1153
LmnI GCTCC 1 cut(s) 450
Lsp1109I GCAGC 2 cut(s) 594, 928
LweI GCATC 5 cut(s) 113, 610, 757, 779, 1143
MaeI CTAG 3 cut(s) 497, 726, 990
MaeII ACGT 1 cut(s) 946
MaeIII GTNAC 2 cut(s) 73, 760
MalI GATC 5 cut(s) 148, 936, 954, 1100, 1155
MboI GATC 5 cut(s) 146, 934, 952, 1098, 1153
MboII GAAGA 7 cut(s) 57, 60, 502, 833, 889, 1049, 1072
MflI RGATCY 3 cut(s) 934, 952, 1153
MhlI GDGCHC 1 cut(s) 1065
MluCI AATT 5 cut(s) 29, 794, 981, 1124, 1163
MlyI GAGTC 4 cut(s) 248, 279, 487, 659
MmeI TCCRAC 1 cut(s) 794
MnlI CCTC 4 cut(s) 220, 563, 628, 636
Mph1103I ATGCAT 2 cut(s) 106, 772
MroXI GAANNNNTTC 1 cut(s) 1079
MseI TTAA 7 cut(s) 264, 315, 549, 690, 1019, 1032, 1172
MslI CAYNNNNRTG 2 cut(s) 734, 775
MspA1I CMGCKG 1 cut(s) 607
MspI CCGG 1 cut(s) 415
MspR9I CCNGG 1 cut(s) 415
MwoI GCNNNNNNNGC 5 cut(s) 206, 331, 399, 607, 938
NciI CCSGG 1 cut(s) 415
NdeI CATATG 1 cut(s) 543
NdeII GATC 5 cut(s) 146, 934, 952, 1098, 1153
NlaIII CATG 6 cut(s) 83, 182, 450, 490, 709, 739
NlaIV GGNNCC 2 cut(s) 519, 1119
NmuCI GTSAC 2 cut(s) 73, 760
NsiI ATGCAT 2 cut(s) 106, 772
PagI TCATGA 2 cut(s) 486, 735
PdmI GAANNNNTTC 1 cut(s) 1079
PfeI GAWTC 5 cut(s) 62, 589, 614, 711, 1176
PkrI GCNGC 2 cut(s) 609, 943
PleI GAGTC 4 cut(s) 248, 279, 487, 659
PpsI GAGTC 4 cut(s) 248, 279, 487, 659
PpuMI RGGWCCY 1 cut(s) 517
PsiI TTATAA 1 cut(s) 801
Psp5II RGGWCCY 1 cut(s) 517
PspN4I GGNNCC 2 cut(s) 519, 1119
PspPI GGNCC 1 cut(s) 517
PspPPI RGGWCCY 1 cut(s) 517
PstI CTGCAG 1 cut(s) 934
PstNI CAGNNNCTG 1 cut(s) 257
PsuI RGATCY 3 cut(s) 934, 952, 1153
PvuII CAGCTG 1 cut(s) 607
RsaI GTAC 2 cut(s) 127, 1119
RsaNI GTAC 2 cut(s) 126, 1118
RseI CAYNNNNRTG 2 cut(s) 734, 775
SaqAI TTAA 7 cut(s) 264, 315, 549, 690, 1019, 1032, 1172
SatI GCNGC 2 cut(s) 608, 942
Sau3AI GATC 5 cut(s) 146, 934, 952, 1098, 1153
Sau96I GGNCC 1 cut(s) 517
SchI GAGTC 4 cut(s) 248, 279, 487, 659
ScrFI CCNGG 1 cut(s) 415
SduI GDGCHC 1 cut(s) 1065
SfaNI GCATC 5 cut(s) 113, 610, 757, 779, 1143
SfcI CTRYAG 1 cut(s) 930
SinI GGWCC 1 cut(s) 517
SmiMI CAYNNNNRTG 2 cut(s) 734, 775
Sse9I AATT 5 cut(s) 29, 794, 981, 1124, 1163
SspI AATATT 1 cut(s) 883
SspMI CTAG 3 cut(s) 497, 726, 990
StyD4I CCNGG 1 cut(s) 413
StyI CCWWGG 1 cut(s) 989
TaaI ACNGT 4 cut(s) 36, 157, 657, 1092
TaiI ACGT 1 cut(s) 949
TaqI TCGA 3 cut(s) 145, 398, 587
TasI AATT 5 cut(s) 29, 794, 981, 1124, 1163
TfiI GAWTC 5 cut(s) 62, 589, 614, 711, 1176
Tru1I TTAA 7 cut(s) 264, 315, 549, 690, 1019, 1032, 1172
Tru9I TTAA 7 cut(s) 264, 315, 549, 690, 1019, 1032, 1172
TscAI CASTG 3 cut(s) 295, 660, 765
TseFI GTSAC 2 cut(s) 73, 760
TseI GCWGC 2 cut(s) 607, 941
Tsp45I GTSAC 2 cut(s) 73, 760
TspDTI ATGAA 9 cut(s) 74, 150, 150, 503, 517, 711, 724, 752, 806
TspGWI ACGGA 1 cut(s) 779
TspRI CASTG 3 cut(s) 295, 660, 765
VneI GTGCAC 1 cut(s) 1061
VpaK11BI GGWCC 1 cut(s) 517
XapI RAATTY 2 cut(s) 794, 1163
XmaJI CCTAGG 1 cut(s) 989
XmiI GTMKAC 1 cut(s) 339
XmnI GAANNNNTTC 1 cut(s) 1079
XspI CTAG 3 cut(s) 497, 726, 990
Zsp2I ATGCAT 2 cut(s) 106, 772
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.