Rh2CG424900
ERF Family

mTERF

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0000263
Physical Location & Seq
Forward (+)
57883336 .. 57886571
3236 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG424900.1

Sequence Viewer

Length: 1221 bp
ATGTTTGGTGTTTACTGTAAAAGATTGCAATTACTAGTTCCAACTTCAGTTACCCATTTTCATTGCTTTCAAAAGTTCCTTCCTTTTAGCAGATCATATTCATCTTTATTAGGATCTGATATAGATGATGATGATGATAAACCCCAAGTTCACTCTTTTACAGTTTCATACCTCATAAACTCATTTGGGTTTTCCCCAAAACTGGCTCTCTCTTTGTCCAATAAGCATAGGGTACGGTTTGATTCCCCAGAAAAACCAGACTCAGTTGTTAAGCTTCTCAAACACCATGGGTTCAATGGTACCCAGATATCCGAAATTGTTAAGAAACTACCAACCTTGCTTTTGTGCAATGCTGAGAAGACCCTTGAGCCCAAGCTCCAGTTTTTTGATTCTATTGGCCTTTCAGCCACCGCCCTTGCTTGGGTCGTCAGTTACAACCAACGCATTTTGGGTCAAAGCTTAGAGAGAAGTCTCCGACCGTGCTATGATATCATCAAAAGTCTACCTATCCCCGACAACATGGTGGCTGTTTTCTTGAAGAACTCGAACCGGGCATTTGGGGTCAAGATGCTTAGCAATCTTGTTCCCAATGTTTCAGTTCTTAGGGCAATTCAAGTGCCGGAATCCTGCATCTCCTTTTATGTTACCTATCATCCTCTTGTGCTGTCCCCTGAAACTAGCAAGTTTAAGGAAAGTGTAAACAAGATCATTAATCTCGGAATTCTGCCTCCGAGTTTTACTTTCATGAAGGCACTACAAGTCATCTCTCAGATGGATGCATCAAAGTGGAGACGAAAGACAGAGTTCTATAGGAAGTGCAGTTGGACTGAGGATGACTTTCTGTTGGCATTTAGAAAGAATCCCATGTTTATGAGCTTGTCAGAGGAGAAGTGTTCAAGTAAAATTGAGTTTCTTGTGAACAAAATGGGTTGGCAGCCTGCAGAAGTGGCTGACAGGCCGGATATTCTAACTCATAGTTTGGAGAAGTCTATCATACCTAGGTGTTCAGTTATTAGAGTTCTCCAATATAAGGGTTTGATGAAAAAGGGAGAACTTTCTCAAGCTACCATGCTGATAAACAGTAGGAAGCGCTTCTTGGATAGGTTTGTGACCAAATATCAGGATCAAGCACCTGAACTGTTGAGTATCTTTCAAGGGCAAATGTCTCTAGCAGAATTGGGTGTAGGATTTGAGGAAAGAGATGGAGTGAAACAATTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
mTERF

Protein Analysis

406

Amino Acids

46.32

Weight (kDa)

9.33

Isoelectric Point (pI)

45.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
mTERF PF02536 90 - 223 4.4e-18 mTERF
mTERF PF02536 219 - 366 2.2e-17 mTERF
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000263)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G21150 AT1G21150 AT1G21150
fragaria_vesca FvH4_4g17900 FvH4_6g26110 FvH4_6g33880 FvH4_6g33900 FvH4_6g34011 FvH4_6g34011 FvH4_6g34011 FvH4_6g34011 FvH4_6g34030 FvH4_6g34040 FvH4_6g34070 FvH4_6g34070 FvH4_7g12830
malus_domestica MD09G1189800.v1.1 MD09G1189900.v1.1 MD09G1190000.v1.1 MD14G1088800.v1.1 MD14G1088900.v1.1 MD17G1172900.v1.1
pyrus_communis pycom07g03460 pycom09g10650 pycom14g07860
rosa_chinensis RchiOBHm_Chr1g0351891 RchiOBHm_Chr1g0351901 RchiOBHm_Chr2g0143771 RchiOBHm_Chr2g0143861 RchiOBHm_Chr2g0143881 RchiOBHm_Chr2g0143941 RchiOBHm_Chr2g0143951 RchiOBHm_Chr2g0144081 RchiOBHm_Chr2g0144091 RchiOBHm_Chr2g0144211 RchiOBHm_Chr2g0144231 RchiOBHm_Chr2g0144241 RchiOBHm_Chr2g0144291 RchiOBHm_Chr2g0144301 RchiOBHm_Chr2g0144311 RchiOBHm_Chr2g0144331 RchiOBHm_Chr2g0144341 RchiOBHm_Chr4g0422021 RchiOBHm_Chr4g0422031
rosa_laevigata RLG00000007639 RLG00000020063 RLG00000020071 RLG00000020072 RLG00000020074
rosa_multiflora Rmu_co8214640.1_g000001 Rmu_co8471033.1_g000001 Rmu_sc0000789.1_g000002 Rmu_sc0001321.1_g000001 Rmu_sc0004340.1_g000001 Rmu_sc0004897.1_g000001 Rmu_sc0007105.1_g000005 Rmu_sc0009498.1_g000001 Rmu_sc0009498.1_g000002 Rmu_sc0019136.1_g000001 Rmu_sc0020327.1_g000002 Rmu_sc0020327.1_g000003 Rmu_sc0022905.1_g000001 Rmu_sc0032602.1_g000003 Rmu_sc0032602.1_g000004
rosa_roxburghii Rroxscaffold_2G00101380 Rroxscaffold_2G00101390 Rroxscaffold_2G00101400 Rroxscaffold_2G00101410 Rroxscaffold_2G00101480 Rroxscaffold_2G00101490 Rroxscaffold_4G00303470 Rroxscaffold_5G00364130 Rroxscaffold_5G00364150
rosa_rugosa Rorug01G0222600 Rorug02G0384700 Rorug02G0384800 Rorug02G0385800 Rorug02G0385900 Rorug02G0386000 Rorug02G0386000 Rorug02G0386100 Rorug04G0176700 Rorug04G0176800.1
rosa_samantha Rh1AG236500 Rh1AG236600 Rh1BG206900 Rh1CG221000 Rh1CG221100 Rh2BG444800 Rh2BG444900 Rh2BG446600 Rh2BG446700 Rh2BG447600 Rh2BG448100 Rh2BG448400 Rh2BG448500 Rh2BG448700 Rh2BG448800 Rh2CG423500 Rh2CG423600 Rh2CG424800 Rh2CG424900 Rh2CG425100 Rh2CG425200 Rh2DG455200 Rh2DG455300 Rh2DG456900 Rh2DG457000 Rh2DG457100 Rh2DG457600 Rh2DG457900 Rh2DG458000 Rh2DG458300 Rh2DG458400 Rh4AG236100 Rh4AG236200 Rh4BG239200 Rh4CG250900 Rh4CG251100
rosa_wichuraiana Rw0G000400 Rw0G015990 Rw0G017200 Rw1G020580 Rw2G033310 Rw2G035630 Rw2G035640 Rw2G035790 Rw2G035800 Rw2G035840 Rw2G036160 Rw4G019830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 299
AccB1I GGYRCC 1 cut(s) 299
AccI GTMKAC 1 cut(s) 502
AciI CCGC 1 cut(s) 411
AclWI GGATC 2 cut(s) 121, 1131
AcsI RAATTY 1 cut(s) 720
AcuI CTGAAG 1 cut(s) 30
AfaI GTAC 2 cut(s) 234, 301
AfeI AGCGCT 1 cut(s) 1091
AfiI CCNNNNNNNGG 4 cut(s) 202, 420, 421, 1030
AgsI TTSAA 6 cut(s) 71, 295, 538, 614, 897, 1154
AhlI ACTAGT 1 cut(s) 34
AjuI GAANNNNNNNTTGG 2 cut(s) 1079, 1111
AluBI AGCT 5 cut(s) 274, 376, 459, 876, 1064
AluI AGCT 5 cut(s) 274, 376, 459, 876, 1064
Alw26I GTCTC 3 cut(s) 476, 784, 1170
AlwI GGATC 2 cut(s) 121, 1131
Aor51HI AGCGCT 1 cut(s) 1091
AoxI GGCC 2 cut(s) 397, 956
ApeKI GCWGC 1 cut(s) 934
ApoI RAATTY 1 cut(s) 720
AseI ATTAAT 1 cut(s) 711
Asp700I GAANNNNTTC 1 cut(s) 1091
Asp718I GGTACC 1 cut(s) 299
AspA2I CCTAGG 1 cut(s) 998
AspLEI GCGC 1 cut(s) 1092
AsuC2I CCSGG 1 cut(s) 551
AvrII CCTAGG 1 cut(s) 998
BanI GGYRCC 1 cut(s) 299
BanII GRGCYC 1 cut(s) 372
BbsI GAAGAC 1 cut(s) 365
BbvI GCAGC 1 cut(s) 946
BccI CCATC 2 cut(s) 766, 1196
BcnI CCSGG 1 cut(s) 551
BcoDI GTCTC 3 cut(s) 476, 784, 1170
BcuI ACTAGT 1 cut(s) 34
BfaI CTAG 4 cut(s) 35, 678, 999, 1169
BfmI CTRYAG 2 cut(s) 808, 939
BfoI RGCGCY 1 cut(s) 1093
BisI GCNGC 1 cut(s) 935
BlnI CCTAGG 1 cut(s) 998
BlpI GCTNAGC 1 cut(s) 572
BlsI GCNGC 1 cut(s) 936
Bme1390I CCNGG 1 cut(s) 551
BmiI GGNNCC 1 cut(s) 301
BmrFI CCNGG 1 cut(s) 551
BmsI GCATC 4 cut(s) 558, 639, 766, 788
BpiI GAAGAC 1 cut(s) 365
BpmI CTGGAG 1 cut(s) 362
Bpu1102I GCTNAGC 1 cut(s) 572
BpuEI CTTGAG 2 cut(s) 386, 1044
BpuMI CCSGG 1 cut(s) 551
BsaJI CCNNGG 2 cut(s) 286, 998
Bsc4I CCNNNNNNNGG 4 cut(s) 202, 420, 421, 1030
Bse1I ACTGG 2 cut(s) 207, 379
Bse3DI GCAATG 2 cut(s) 61, 355
BseDI CCNNGG 2 cut(s) 286, 998
BseGI GGATG 3 cut(s) 652, 781, 838
BseLI CCNNNNNNNGG 4 cut(s) 202, 420, 421, 1030
BseMI GCAATG 2 cut(s) 61, 355
BseMII CTCAG 4 cut(s) 276, 345, 782, 819
BseNI ACTGG 2 cut(s) 207, 379
BseRI GAGGAG 1 cut(s) 899
BseXI GCAGC 1 cut(s) 946
BsgI GTGCAG 1 cut(s) 838
Bsh1285I CGRYCG 1 cut(s) 479
BshFI GGCC 2 cut(s) 399, 958
BshNI GGYRCC 1 cut(s) 299
BsiEI CGRYCG 1 cut(s) 479
BsiSI CCGG 3 cut(s) 550, 620, 959
BslFI GGGAC 1 cut(s) 652
BslI CCNNNNNNNGG 4 cut(s) 202, 420, 421, 1030
BsmAI GTCTC 3 cut(s) 476, 784, 1170
BsmBI CGTCTC 1 cut(s) 784
BsmFI GGGAC 1 cut(s) 652
BsnI GGCC 2 cut(s) 399, 958
Bsp1286I GDGCHC 1 cut(s) 372
Bsp143I GATC 4 cut(s) 92, 113, 705, 1123
Bsp1720I GCTNAGC 1 cut(s) 572
Bsp19I CCATGG 1 cut(s) 286
BspACI CCGC 1 cut(s) 411
BspANI GGCC 2 cut(s) 399, 958
BspCNI CTCAG 4 cut(s) 275, 346, 781, 820
BspHI TCATGA 1 cut(s) 744
BspLI GGNNCC 1 cut(s) 301
BspMAI CTGCAG 1 cut(s) 943
BspPI GGATC 2 cut(s) 121, 1131
BspT107I GGYRCC 1 cut(s) 299
BsrDI GCAATG 2 cut(s) 61, 355
BsrI ACTGG 2 cut(s) 207, 379
BssECI CCNNGG 2 cut(s) 286, 998
BssMI GATC 4 cut(s) 92, 113, 705, 1123
BssT1I CCWWGG 2 cut(s) 286, 998
Bst4CI ACNGT 6 cut(s) 17, 163, 237, 480, 1082, 1140
BstC8I GCNNGC 1 cut(s) 939
BstDEI CTNAG 7 cut(s) 262, 354, 460, 572, 602, 768, 828
BstDSI CCRYGG 1 cut(s) 286
BstF5I GGATG 3 cut(s) 652, 781, 838
BstH2I RGCGCY 1 cut(s) 1093
BstHHI GCGC 1 cut(s) 1092
BstKTI GATC 4 cut(s) 95, 116, 708, 1126
BstMAI GTCTC 3 cut(s) 476, 784, 1170
BstMBI GATC 4 cut(s) 92, 113, 705, 1123
BstMCI CGRYCG 1 cut(s) 479
BstMWI GCNNNNNNNGC 1 cut(s) 947
BstSCI CCNGG 1 cut(s) 549
BstSFI CTRYAG 2 cut(s) 808, 939
BstV1I GCAGC 1 cut(s) 946
BstV2I GAAGAC 1 cut(s) 365
BstX2I RGATCY 1 cut(s) 113
BstYI RGATCY 1 cut(s) 113
BsuRI GGCC 2 cut(s) 399, 958
BtgI CCRYGG 1 cut(s) 286
BtsCI GGATG 3 cut(s) 652, 781, 838
Cac8I GCNNGC 1 cut(s) 939
CciI TCATGA 1 cut(s) 744
CfoI GCGC 1 cut(s) 1092
Csp6I GTAC 2 cut(s) 233, 300
CspCI CAANNNNNGTGG 2 cut(s) 397, 432
CviAII CATG 5 cut(s) 287, 520, 745, 865, 1069
CviQI GTAC 2 cut(s) 233, 300
DdeI CTNAG 7 cut(s) 262, 354, 460, 572, 602, 768, 828
DpnI GATC 4 cut(s) 94, 115, 707, 1125
DpnII GATC 4 cut(s) 92, 113, 705, 1123
Eco130I CCWWGG 2 cut(s) 286, 998
Eco24I GRGCYC 1 cut(s) 372
Eco32I GATATC 2 cut(s) 309, 490
Eco47III AGCGCT 1 cut(s) 1091
Eco57I CTGAAG 1 cut(s) 30
EcoRI GAATTC 1 cut(s) 720
EcoRV GATATC 2 cut(s) 309, 490
EcoT14I CCWWGG 2 cut(s) 286, 998
EcoT22I ATGCAT 1 cut(s) 781
EcoT38I GRGCYC 1 cut(s) 372
ErhI CCWWGG 2 cut(s) 286, 998
Esp3I CGTCTC 1 cut(s) 784
FaeI CATG 5 cut(s) 290, 523, 748, 868, 1072
FalI AAGNNNNNCTT 2 cut(s) 1079, 1111
FaqI GGGAC 1 cut(s) 652
FatI CATG 5 cut(s) 286, 519, 744, 864, 1068
FblI GTMKAC 1 cut(s) 502
Fnu4HI GCNGC 1 cut(s) 935
FokI GGATG 3 cut(s) 639, 788, 845
FriOI GRGCYC 1 cut(s) 372
Fsp4HI GCNGC 1 cut(s) 935
FspBI CTAG 4 cut(s) 35, 678, 999, 1169
GlaI GCGC 1 cut(s) 1091
GluI GCNGC 1 cut(s) 935
GsuI CTGGAG 1 cut(s) 362
HaeII RGCGCY 1 cut(s) 1093
HaeIII GGCC 2 cut(s) 399, 958
HapII CCGG 3 cut(s) 550, 620, 959
HhaI GCGC 1 cut(s) 1092
Hin1II CATG 5 cut(s) 290, 523, 748, 868, 1072
Hin6I GCGC 1 cut(s) 1090
HinP1I GCGC 1 cut(s) 1090
HindIII AAGCTT 2 cut(s) 272, 457
HinfI GANTC 5 cut(s) 242, 260, 389, 623, 859
HpaII CCGG 3 cut(s) 550, 620, 959
Hpy166II GTNNAC 5 cut(s) 13, 151, 503, 700, 919
Hpy188I TCNGA 7 cut(s) 118, 313, 476, 719, 732, 771, 883
Hpy188III TCNNGA 4 cut(s) 535, 565, 745, 1121
Hpy8I GTNNAC 5 cut(s) 13, 151, 503, 700, 919
HpyAV CCTTC 2 cut(s) 89, 742
HpyCH4III ACNGT 6 cut(s) 17, 163, 237, 480, 1082, 1140
HpyCH4V TGCA 6 cut(s) 28, 348, 630, 779, 819, 941
HpyF10VI GCNNNNNNNGC 1 cut(s) 947
HpyF3I CTNAG 7 cut(s) 262, 354, 460, 572, 602, 768, 828
Hsp92II CATG 5 cut(s) 290, 523, 748, 868, 1072
HspAI GCGC 1 cut(s) 1090
KpnI GGTACC 1 cut(s) 303
Kzo9I GATC 4 cut(s) 92, 113, 705, 1123
LmnI GCTCC 1 cut(s) 381
Lsp1109I GCAGC 1 cut(s) 946
LweI GCATC 4 cut(s) 558, 639, 766, 788
MaeI CTAG 4 cut(s) 35, 678, 999, 1169
MaeIII GTNAC 4 cut(s) 49, 431, 643, 1108
MalI GATC 4 cut(s) 94, 115, 707, 1125
MboI GATC 4 cut(s) 92, 113, 705, 1123
MboII GAAGA 2 cut(s) 370, 550
MfeI CAATTG 1 cut(s) 1214
MflI RGATCY 1 cut(s) 113
MhlI GDGCHC 1 cut(s) 372
MluCI AATT 7 cut(s) 29, 315, 609, 720, 903, 1175, 1214
MlyI GAGTC 1 cut(s) 254
MmeI TCCRAC 3 cut(s) 65, 499, 803
MnlI CCTC 6 cut(s) 182, 666, 738, 823, 877, 1186
Mph1103I ATGCAT 1 cut(s) 781
MroXI GAANNNNTTC 1 cut(s) 1091
MseI TTAA 4 cut(s) 270, 321, 687, 711
MslI CAYNNNNRTG 2 cut(s) 784, 869
MspI CCGG 3 cut(s) 550, 620, 959
MspR9I CCNGG 1 cut(s) 551
MunI CAATTG 1 cut(s) 1214
MwoI GCNNNNNNNGC 1 cut(s) 947
NciI CCSGG 1 cut(s) 551
NcoI CCATGG 1 cut(s) 286
NdeII GATC 4 cut(s) 92, 113, 705, 1123
NlaIII CATG 5 cut(s) 290, 523, 748, 868, 1072
NlaIV GGNNCC 1 cut(s) 301
NmuCI GTSAC 1 cut(s) 1108
NsiI ATGCAT 1 cut(s) 781
PagI TCATGA 1 cut(s) 744
PdmI GAANNNNTTC 1 cut(s) 1091
PfeI GAWTC 4 cut(s) 242, 389, 623, 859
PkrI GCNGC 1 cut(s) 936
PleI GAGTC 1 cut(s) 254
PpsI GAGTC 1 cut(s) 254
PshBI ATTAAT 1 cut(s) 711
PspN4I GGNNCC 1 cut(s) 301
PstI CTGCAG 1 cut(s) 943
PsuI RGATCY 1 cut(s) 113
RsaI GTAC 2 cut(s) 234, 301
RsaNI GTAC 2 cut(s) 233, 300
RseI CAYNNNNRTG 2 cut(s) 784, 869
SaqAI TTAA 4 cut(s) 270, 321, 687, 711
SatI GCNGC 1 cut(s) 935
Sau3AI GATC 4 cut(s) 92, 113, 705, 1123
SchI GAGTC 1 cut(s) 254
ScrFI CCNGG 1 cut(s) 551
SduI GDGCHC 1 cut(s) 372
SfaNI GCATC 4 cut(s) 558, 639, 766, 788
SfcI CTRYAG 2 cut(s) 808, 939
SmiMI CAYNNNNRTG 2 cut(s) 784, 869
SmlI CTYRAG 2 cut(s) 365, 1059
SmoI CTYRAG 2 cut(s) 365, 1059
SpeI ACTAGT 1 cut(s) 34
Sse9I AATT 7 cut(s) 29, 315, 609, 720, 903, 1175, 1214
SsiI CCGC 1 cut(s) 411
SspMI CTAG 4 cut(s) 35, 678, 999, 1169
StyD4I CCNGG 1 cut(s) 549
StyI CCWWGG 2 cut(s) 286, 998
TaaI ACNGT 6 cut(s) 17, 163, 237, 480, 1082, 1140
TaqI TCGA 1 cut(s) 545
TasI AATT 7 cut(s) 29, 315, 609, 720, 903, 1175, 1214
TfiI GAWTC 4 cut(s) 242, 389, 623, 859
Tru1I TTAA 4 cut(s) 270, 321, 687, 711
Tru9I TTAA 4 cut(s) 270, 321, 687, 711
TseFI GTSAC 1 cut(s) 1108
TseI GCWGC 1 cut(s) 934
Tsp45I GTSAC 1 cut(s) 1108
TspDTI ATGAA 6 cut(s) 50, 90, 156, 733, 761, 1055
VspI ATTAAT 1 cut(s) 711
XapI RAATTY 1 cut(s) 720
XcmI CCANNNNNNNNNTGG 1 cut(s) 293
XmaJI CCTAGG 1 cut(s) 998
XmiI GTMKAC 1 cut(s) 502
XmnI GAANNNNTTC 1 cut(s) 1091
XspI CTAG 4 cut(s) 35, 678, 999, 1169
Zsp2I ATGCAT 1 cut(s) 781
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.