Rw4G019830
ERF Family

mTERF

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0000263
Physical Location & Seq
Reverse (-)
43421447 .. 43426511
5065 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G019830.1

Sequence Viewer

Length: 1227 bp
ATGTTTGGTTTTTGCTGTAAAAGATTGCAATTACTGCTTCCAAGTTGTAGCACTTCTGTTGATTCAGTGACCCATTTACATTGCTTCCGCAAAGCATCTCACTTTAGCAGTTCATATTCATCCAAATCGTTATTAGGTGGTAAAATAGATAAACCCCAAGAGAAAGATGGCTCTTTTACAGTTTCATACCTTGTAAACTCATGTGGGTTGTCACCAGAAGTCGCTCTCTCTTTGTCCAAGAAGAGGAAGAGGGTACACTTCAAATCCAGAGAGAAACCAGACTCGGTTATTAAGCTTCTGAAACACTATGGATTCAATGACACATCCATATCCCAACTTGTTAAGAAACGCCCAGAAGTGCTAGTGGCCAATCCTGACAAGACCCTCTTGCCCAAACTTGAGTTTTTTAGTTCTATTGGCCTCTCAGGCATTGACATTGCTCAGGTTCTTTGCAGCAACCCAAGTGTTTTGAAACGAAATGTAGATAGAAGTCTCAGTCCTTGTTACGAAATCCTCAGAAGTCTACTTGGTTCCGACATAAAGTTTGCAGGTTTCTTTAAGAACTCCTATCAGCTGTTGACGGTCAAATCAGTAAGCAACATTGCTCGGAATGTTTCAGTTCTCAGAGAACTTAAAGCACCAGAATCTTTAATCTCTTACTATGCAACATGTCAGCCACTGTTAATGTCCCTTGAAAACGAGAAGTTTCACCAAAATGTCAACAAGGTCATGAGTTTGGGATTCCACCCTTCAACATCAACGACGTTCATGAAAGCACTATTTGTGATCTCCACTACGGATTCATCAAAATGGGCACAAAAGATGGATTTCTATAAAAAGTGTGGTTGGACTGAAGATGACTTTTTGCTGGCATTTAGTAAGAATCCCCTCTTTATGAACATGACAGAGAAGAATATTTCTAGTAAAATGGATTTTATTGTCAACAAAATGGCTTTGGTTCAGCCTGCAGATTTGGCTCATTATCCGACTGCCCTAACTTATAGTTTGGAGAATCGGATAATACCTAGGGCTTCAGTTATTAGAGTTCTCCTGTTGAAGGGCTTAATAACAAGGGGAGATTTTTCTTTCAACAGCTTGATGATATACAATAATAAGAAGTTCTTGGATAAGTTTGTGGTCCCATATCAACCGCAAGTACCTGAATTGTTGAGCATCTTTGCAGGGGAAATGGGTCTGGGTCTTGTGGAACTGGGCATTAGGGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
mTERF

Protein Analysis

408

Amino Acids

45.86

Weight (kDa)

9.51

Isoelectric Point (pI)

41.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
mTERF PF02536 97 - 313 6.3e-26 mTERF
mTERF PF02536 226 - 375 2.1e-15 mTERF
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000263)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G21150 AT1G21150 AT1G21150
fragaria_vesca FvH4_4g17900 FvH4_6g26110 FvH4_6g33880 FvH4_6g33900 FvH4_6g34011 FvH4_6g34011 FvH4_6g34011 FvH4_6g34011 FvH4_6g34030 FvH4_6g34040 FvH4_6g34070 FvH4_6g34070 FvH4_7g12830
malus_domestica MD09G1189800.v1.1 MD09G1189900.v1.1 MD09G1190000.v1.1 MD14G1088800.v1.1 MD14G1088900.v1.1 MD17G1172900.v1.1
pyrus_communis pycom07g03460 pycom09g10650 pycom14g07860
rosa_chinensis RchiOBHm_Chr1g0351891 RchiOBHm_Chr1g0351901 RchiOBHm_Chr2g0143771 RchiOBHm_Chr2g0143861 RchiOBHm_Chr2g0143881 RchiOBHm_Chr2g0143941 RchiOBHm_Chr2g0143951 RchiOBHm_Chr2g0144081 RchiOBHm_Chr2g0144091 RchiOBHm_Chr2g0144211 RchiOBHm_Chr2g0144231 RchiOBHm_Chr2g0144241 RchiOBHm_Chr2g0144291 RchiOBHm_Chr2g0144301 RchiOBHm_Chr2g0144311 RchiOBHm_Chr2g0144331 RchiOBHm_Chr2g0144341 RchiOBHm_Chr4g0422021 RchiOBHm_Chr4g0422031
rosa_laevigata RLG00000007639 RLG00000020063 RLG00000020071 RLG00000020072 RLG00000020074
rosa_multiflora Rmu_co8214640.1_g000001 Rmu_co8471033.1_g000001 Rmu_sc0000789.1_g000002 Rmu_sc0001321.1_g000001 Rmu_sc0004340.1_g000001 Rmu_sc0004897.1_g000001 Rmu_sc0007105.1_g000005 Rmu_sc0009498.1_g000001 Rmu_sc0009498.1_g000002 Rmu_sc0019136.1_g000001 Rmu_sc0020327.1_g000002 Rmu_sc0020327.1_g000003 Rmu_sc0022905.1_g000001 Rmu_sc0032602.1_g000003 Rmu_sc0032602.1_g000004
rosa_roxburghii Rroxscaffold_2G00101380 Rroxscaffold_2G00101390 Rroxscaffold_2G00101400 Rroxscaffold_2G00101410 Rroxscaffold_2G00101480 Rroxscaffold_2G00101490 Rroxscaffold_4G00303470 Rroxscaffold_5G00364130 Rroxscaffold_5G00364150
rosa_rugosa Rorug01G0222600 Rorug02G0384700 Rorug02G0384800 Rorug02G0385800 Rorug02G0385900 Rorug02G0386000 Rorug02G0386000 Rorug02G0386100 Rorug04G0176700 Rorug04G0176800.1
rosa_samantha Rh1AG236500 Rh1AG236600 Rh1BG206900 Rh1CG221000 Rh1CG221100 Rh2BG444800 Rh2BG444900 Rh2BG446600 Rh2BG446700 Rh2BG447600 Rh2BG448100 Rh2BG448400 Rh2BG448500 Rh2BG448700 Rh2BG448800 Rh2CG423500 Rh2CG423600 Rh2CG424800 Rh2CG424900 Rh2CG425100 Rh2CG425200 Rh2DG455200 Rh2DG455300 Rh2DG456900 Rh2DG457000 Rh2DG457100 Rh2DG457600 Rh2DG457900 Rh2DG458000 Rh2DG458300 Rh2DG458400 Rh4AG236100 Rh4AG236200 Rh4BG239200 Rh4CG250900 Rh4CG251100
rosa_wichuraiana Rw0G000400 Rw0G015990 Rw0G017200 Rw1G020580 Rw2G033310 Rw2G035630 Rw2G035640 Rw2G035790 Rw2G035800 Rw2G035840 Rw2G036160 Rw4G019830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 539
AccI GTMKAC 1 cut(s) 523
AciI CCGC 2 cut(s) 88, 1151
AcoI YGGCCR 1 cut(s) 366
AcuI CTGAAG 2 cut(s) 873, 1017
AfaI GTAC 2 cut(s) 255, 1158
AfiI CCNNNNNNNGG 2 cut(s) 243, 1057
AflIII ACRYGT 1 cut(s) 668
AgsI TTSAA 7 cut(s) 262, 316, 472, 695, 753, 1057, 1090
AluBI AGCT 3 cut(s) 295, 574, 1095
AluI AGCT 3 cut(s) 295, 574, 1095
Alw26I GTCTC 1 cut(s) 497
AlwNI CAGNNNCTG 1 cut(s) 679
AoxI GGCC 2 cut(s) 366, 418
ApeKI GCWGC 1 cut(s) 453
ArsI GACNNNNNNTTYG 2 cut(s) 527, 559
AspA2I CCTAGG 1 cut(s) 1025
AspS9I GGNCC 1 cut(s) 1138
AsuHPI GGTGA 2 cut(s) 204, 701
AvaII GGWCC 1 cut(s) 1138
AvrII CCTAGG 1 cut(s) 1025
BaeGI GKGCMC 1 cut(s) 817
BalI TGGCCA 1 cut(s) 368
BbvI GCAGC 1 cut(s) 465
BccI CCATC 2 cut(s) 161, 817
BcoDI GTCTC 1 cut(s) 497
BfaI CTAG 3 cut(s) 362, 921, 1026
BfmI CTRYAG 1 cut(s) 966
BfuAI ACCTGC 1 cut(s) 539
BglI GCCNNNNNGGC 1 cut(s) 426
BisI GCNGC 1 cut(s) 454
BlnI CCTAGG 1 cut(s) 1025
BlsI GCNGC 1 cut(s) 455
Bme18I GGWCC 1 cut(s) 1138
BmgT120I GGNCC 1 cut(s) 1138
BmiI GGNNCC 2 cut(s) 532, 1140
BmrI ACTGGG 1 cut(s) 1220
BmsI GCATC 2 cut(s) 104, 1182
BmuI ACTGGG 1 cut(s) 1220
Bpu10I CCTNAGC 1 cut(s) 441
BpuEI CTTGAG 1 cut(s) 419
BsaJI CCNNGG 1 cut(s) 1025
Bsc4I CCNNNNNNNGG 2 cut(s) 243, 1057
Bse1I ACTGG 1 cut(s) 1215
Bse3DI GCAATG 3 cut(s) 79, 435, 600
BseDI CCNNGG 1 cut(s) 1025
BseGI GGATG 2 cut(s) 119, 323
BseLI CCNNNNNNNGG 2 cut(s) 243, 1057
BseMI GCAATG 3 cut(s) 79, 435, 600
BseMII CTCAG 5 cut(s) 438, 455, 508, 529, 637
BseNI ACTGG 1 cut(s) 1215
BseSI GKGCMC 1 cut(s) 817
BseXI GCAGC 1 cut(s) 465
BshFI GGCC 2 cut(s) 368, 420
BslFI GGGAC 2 cut(s) 673, 1124
BslI CCNNNNNNNGG 2 cut(s) 243, 1057
BsmAI GTCTC 1 cut(s) 497
BsmFI GGGAC 2 cut(s) 673, 1124
BsnI GGCC 2 cut(s) 368, 420
Bsp1286I GDGCHC 1 cut(s) 817
Bsp143I GATC 1 cut(s) 786
BspACI CCGC 2 cut(s) 88, 1151
BspANI GGCC 2 cut(s) 368, 420
BspCNI CTCAG 5 cut(s) 437, 454, 507, 528, 636
BspHI TCATGA 2 cut(s) 729, 768
BspLI GGNNCC 2 cut(s) 532, 1140
BspMAI CTGCAG 1 cut(s) 970
BspMI ACCTGC 1 cut(s) 539
BsrDI GCAATG 3 cut(s) 79, 435, 600
BsrI ACTGG 1 cut(s) 1215
BssECI CCNNGG 1 cut(s) 1025
BssMI GATC 1 cut(s) 786
BssT1I CCWWGG 1 cut(s) 1025
Bst4CI ACNGT 3 cut(s) 181, 583, 681
Bst6I CTCTTC 2 cut(s) 236, 242
BstAPI GCANNNNNTGC 1 cut(s) 34
BstC8I GCNNGC 2 cut(s) 870, 966
BstDEI CTNAG 5 cut(s) 424, 441, 494, 515, 623
BstENI CCTNNNNNAGG 1 cut(s) 1055
BstF5I GGATG 2 cut(s) 119, 323
BstKTI GATC 1 cut(s) 789
BstMAI GTCTC 1 cut(s) 497
BstMBI GATC 1 cut(s) 786
BstMWI GCNNNNNNNGC 3 cut(s) 34, 426, 974
BstNSI RCATGY 1 cut(s) 672
BstSFI CTRYAG 1 cut(s) 966
BstSLI GKGCMC 1 cut(s) 817
BstV1I GCAGC 1 cut(s) 465
BsuRI GGCC 2 cut(s) 368, 420
BtsCI GGATG 2 cut(s) 119, 323
BtsIMutI CAGTG 2 cut(s) 72, 677
BveI ACCTGC 1 cut(s) 539
Cac8I GCNNGC 2 cut(s) 870, 966
CaiI CAGNNNCTG 1 cut(s) 679
CciI TCATGA 2 cut(s) 729, 768
Cfr13I GGNCC 1 cut(s) 1138
Csp6I GTAC 2 cut(s) 254, 1157
CviAII CATG 5 cut(s) 201, 669, 730, 769, 901
CviQI GTAC 2 cut(s) 254, 1157
DdeI CTNAG 5 cut(s) 424, 441, 494, 515, 623
DpnI GATC 1 cut(s) 788
DpnII GATC 1 cut(s) 786
EaeI YGGCCR 1 cut(s) 366
Eam1104I CTCTTC 2 cut(s) 236, 242
EarI CTCTTC 2 cut(s) 236, 242
Eco130I CCWWGG 1 cut(s) 1025
Eco47I GGWCC 1 cut(s) 1138
Eco57I CTGAAG 2 cut(s) 873, 1017
EcoNI CCTNNNNNAGG 1 cut(s) 1055
EcoT14I CCWWGG 1 cut(s) 1025
ErhI CCWWGG 1 cut(s) 1025
FaeI CATG 5 cut(s) 204, 672, 733, 772, 904
FalI AAGNNNNNCTT 4 cut(s) 371, 403, 1106, 1138
FaqI GGGAC 2 cut(s) 673, 1124
FatI CATG 5 cut(s) 200, 668, 729, 768, 900
FblI GTMKAC 1 cut(s) 523
Fnu4HI GCNGC 1 cut(s) 454
FokI GGATG 2 cut(s) 106, 310
Fsp4HI GCNGC 1 cut(s) 454
FspBI CTAG 3 cut(s) 362, 921, 1026
GluI GCNGC 1 cut(s) 454
HaeIII GGCC 2 cut(s) 368, 420
Hin1II CATG 5 cut(s) 204, 672, 733, 772, 904
HincII GTYRAC 3 cut(s) 579, 721, 943
HindII GTYRAC 3 cut(s) 579, 721, 943
HindIII AAGCTT 1 cut(s) 293
HinfI GANTC 8 cut(s) 62, 281, 312, 644, 741, 800, 883, 1012
HphI GGTGA 2 cut(s) 204, 701
Hpy166II GTNNAC 6 cut(s) 196, 256, 524, 579, 721, 943
Hpy188I TCNGA 7 cut(s) 300, 518, 535, 609, 626, 987, 1017
Hpy188III TCNNGA 4 cut(s) 267, 374, 730, 769
Hpy8I GTNNAC 6 cut(s) 196, 256, 524, 579, 721, 943
Hpy99I CGWCG 1 cut(s) 766
HpyAV CCTTC 2 cut(s) 759, 1051
HpyCH4III ACNGT 3 cut(s) 181, 583, 681
HpyCH4IV ACGT 1 cut(s) 764
HpyCH4V TGCA 6 cut(s) 28, 453, 548, 665, 968, 1181
HpyF10VI GCNNNNNNNGC 3 cut(s) 34, 426, 974
HpyF3I CTNAG 5 cut(s) 424, 441, 494, 515, 623
HpySE526I ACGT 1 cut(s) 764
Hsp92II CATG 5 cut(s) 204, 672, 733, 772, 904
Kzo9I GATC 1 cut(s) 786
Lsp1109I GCAGC 1 cut(s) 465
LweI GCATC 2 cut(s) 104, 1182
MaeI CTAG 3 cut(s) 362, 921, 1026
MaeII ACGT 1 cut(s) 764
MaeIII GTNAC 3 cut(s) 67, 210, 503
MalI GATC 1 cut(s) 788
MboI GATC 1 cut(s) 786
MboII GAAGA 4 cut(s) 253, 259, 866, 922
MhlI GDGCHC 1 cut(s) 817
MlsI TGGCCA 1 cut(s) 368
MluCI AATT 2 cut(s) 29, 1163
MluNI TGGCCA 1 cut(s) 368
MlyI GAGTC 1 cut(s) 275
MmeI TCCRAC 3 cut(s) 558, 827, 1010
MnlI CCTC 6 cut(s) 237, 243, 395, 431, 524, 899
Mox20I TGGCCA 1 cut(s) 368
MscI TGGCCA 1 cut(s) 368
MseI TTAA 7 cut(s) 291, 342, 558, 633, 650, 683, 1064
MslI CAYNNNNRTG 2 cut(s) 714, 808
Msp20I TGGCCA 1 cut(s) 368
MspA1I CMGCKG 1 cut(s) 574
MwoI GCNNNNNNNGC 3 cut(s) 34, 426, 974
NdeII GATC 1 cut(s) 786
NlaIII CATG 5 cut(s) 204, 672, 733, 772, 904
NlaIV GGNNCC 2 cut(s) 532, 1140
NmuCI GTSAC 2 cut(s) 67, 210
NspI RCATGY 1 cut(s) 672
PagI TCATGA 2 cut(s) 729, 768
PciI ACATGT 1 cut(s) 668
PfeI GAWTC 7 cut(s) 62, 312, 644, 741, 800, 883, 1012
PkrI GCNGC 1 cut(s) 455
PleI GAGTC 1 cut(s) 275
PpsI GAGTC 1 cut(s) 275
PscI ACATGT 1 cut(s) 668
PspN4I GGNNCC 2 cut(s) 532, 1140
PspPI GGNCC 1 cut(s) 1138
PstI CTGCAG 1 cut(s) 970
PstNI CAGNNNCTG 1 cut(s) 679
PvuII CAGCTG 1 cut(s) 574
RsaI GTAC 2 cut(s) 255, 1158
RsaNI GTAC 2 cut(s) 254, 1157
RseI CAYNNNNRTG 2 cut(s) 714, 808
SaqAI TTAA 7 cut(s) 291, 342, 558, 633, 650, 683, 1064
SatI GCNGC 1 cut(s) 454
Sau3AI GATC 1 cut(s) 786
Sau96I GGNCC 1 cut(s) 1138
SchI GAGTC 1 cut(s) 275
SduI GDGCHC 1 cut(s) 817
SfaNI GCATC 2 cut(s) 104, 1182
SfcI CTRYAG 1 cut(s) 966
SinI GGWCC 1 cut(s) 1138
SmiMI CAYNNNNRTG 2 cut(s) 714, 808
SmlI CTYRAG 1 cut(s) 398
SmoI CTYRAG 1 cut(s) 398
Sse9I AATT 2 cut(s) 29, 1163
SsiI CCGC 2 cut(s) 88, 1151
SspI AATATT 1 cut(s) 916
SspMI CTAG 3 cut(s) 362, 921, 1026
StyI CCWWGG 1 cut(s) 1025
TaaI ACNGT 3 cut(s) 181, 583, 681
TaiI ACGT 1 cut(s) 767
TasI AATT 2 cut(s) 29, 1163
TfiI GAWTC 7 cut(s) 62, 312, 644, 741, 800, 883, 1012
Tru1I TTAA 7 cut(s) 291, 342, 558, 633, 650, 683, 1064
Tru9I TTAA 7 cut(s) 291, 342, 558, 633, 650, 683, 1064
TscAI CASTG 2 cut(s) 72, 684
TseFI GTSAC 2 cut(s) 67, 210
TseI GCWGC 1 cut(s) 453
Tsp45I GTSAC 2 cut(s) 67, 210
TspDTI ATGAA 7 cut(s) 102, 108, 174, 757, 785, 792, 911
TspGWI ACGGA 1 cut(s) 812
TspRI CASTG 2 cut(s) 72, 684
VpaK11BI GGWCC 1 cut(s) 1138
XagI CCTNNNNNAGG 1 cut(s) 1055
XceI RCATGY 1 cut(s) 672
XcmI CCANNNNNNNNNTGG 1 cut(s) 164
XmaJI CCTAGG 1 cut(s) 1025
XmiI GTMKAC 1 cut(s) 523
XspI CTAG 3 cut(s) 362, 921, 1026
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.