pycom09g10650
ERF Family

mTERF

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
OG0000263
Physical Location & Seq
Reverse (-)
8730105 .. 8730614
510 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g10650.1

Sequence Viewer

Length: 510 bp
ATGGGTGTCCCCCCTTCGTATGCCTCATTTATGAAAGTGCTGTATGTGATTATTCGAGTGAATGAACCAGAATGGGCTCAAAAGATGGAGCTTTATAAGAATTGGGGTTGGACTGAAGATGATTTCTTGTTGGCATTTAGAAAGAATCCTCAGTTTATGGAATTAACAGTGAAGAATTTTTCGAGTAAAATGGATTTTCTTGTGAACAAAATGGGTTGGCATCCTGCAGATGTGGCTGGAAGTTCAGTTGCTCTAAATTATAGTTTGGAAAAGTATATCAAACCAAGGTGCTTAGTTATTAGAGTTCTCCTGTCGAAAGGCTTGATATCGAAGGGAGAATTTTCTTTAGGCACCCTTGTCAGGAAACCAAAGCAGTACTTCTTGGATAGGCTTGTAATCAAATATCAAGAGCAAGTACCTGAATTACGTAGCATCGTTGAAGGGAAATTGAGACTTGCGGAACAGGGCTTAGGATTTGAGCAAAAAGGGGACGGTGTGAAACAATTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
mTERF

Protein Analysis

170

Amino Acids

19.51

Weight (kDa)

9.45

Isoelectric Point (pI)

33.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
mTERF PF02536 11 - 127 6.3e-17 mTERF
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000263)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G21150 AT1G21150 AT1G21150
fragaria_vesca FvH4_4g17900 FvH4_6g26110 FvH4_6g33880 FvH4_6g33900 FvH4_6g34011 FvH4_6g34011 FvH4_6g34011 FvH4_6g34011 FvH4_6g34030 FvH4_6g34040 FvH4_6g34070 FvH4_6g34070 FvH4_7g12830
malus_domestica MD09G1189800.v1.1 MD09G1189900.v1.1 MD09G1190000.v1.1 MD14G1088800.v1.1 MD14G1088900.v1.1 MD17G1172900.v1.1
pyrus_communis pycom07g03460 pycom09g10650 pycom14g07860
rosa_chinensis RchiOBHm_Chr1g0351891 RchiOBHm_Chr1g0351901 RchiOBHm_Chr2g0143771 RchiOBHm_Chr2g0143861 RchiOBHm_Chr2g0143881 RchiOBHm_Chr2g0143941 RchiOBHm_Chr2g0143951 RchiOBHm_Chr2g0144081 RchiOBHm_Chr2g0144091 RchiOBHm_Chr2g0144211 RchiOBHm_Chr2g0144231 RchiOBHm_Chr2g0144241 RchiOBHm_Chr2g0144291 RchiOBHm_Chr2g0144301 RchiOBHm_Chr2g0144311 RchiOBHm_Chr2g0144331 RchiOBHm_Chr2g0144341 RchiOBHm_Chr4g0422021 RchiOBHm_Chr4g0422031
rosa_laevigata RLG00000007639 RLG00000020063 RLG00000020071 RLG00000020072 RLG00000020074
rosa_multiflora Rmu_co8214640.1_g000001 Rmu_co8471033.1_g000001 Rmu_sc0000789.1_g000002 Rmu_sc0001321.1_g000001 Rmu_sc0004340.1_g000001 Rmu_sc0004897.1_g000001 Rmu_sc0007105.1_g000005 Rmu_sc0009498.1_g000001 Rmu_sc0009498.1_g000002 Rmu_sc0019136.1_g000001 Rmu_sc0020327.1_g000002 Rmu_sc0020327.1_g000003 Rmu_sc0022905.1_g000001 Rmu_sc0032602.1_g000003 Rmu_sc0032602.1_g000004
rosa_roxburghii Rroxscaffold_2G00101380 Rroxscaffold_2G00101390 Rroxscaffold_2G00101400 Rroxscaffold_2G00101410 Rroxscaffold_2G00101480 Rroxscaffold_2G00101490 Rroxscaffold_4G00303470 Rroxscaffold_5G00364130 Rroxscaffold_5G00364150
rosa_rugosa Rorug01G0222600 Rorug02G0384700 Rorug02G0384800 Rorug02G0385800 Rorug02G0385900 Rorug02G0386000 Rorug02G0386000 Rorug02G0386100 Rorug04G0176700 Rorug04G0176800.1
rosa_samantha Rh1AG236500 Rh1AG236600 Rh1BG206900 Rh1CG221000 Rh1CG221100 Rh2BG444800 Rh2BG444900 Rh2BG446600 Rh2BG446700 Rh2BG447600 Rh2BG448100 Rh2BG448400 Rh2BG448500 Rh2BG448700 Rh2BG448800 Rh2CG423500 Rh2CG423600 Rh2CG424800 Rh2CG424900 Rh2CG425100 Rh2CG425200 Rh2DG455200 Rh2DG455300 Rh2DG456900 Rh2DG457000 Rh2DG457100 Rh2DG457600 Rh2DG457900 Rh2DG458000 Rh2DG458300 Rh2DG458400 Rh4AG236100 Rh4AG236200 Rh4BG239200 Rh4CG250900 Rh4CG251100
rosa_wichuraiana Rw0G000400 Rw0G015990 Rw0G017200 Rw1G020580 Rw2G033310 Rw2G035630 Rw2G035640 Rw2G035790 Rw2G035800 Rw2G035840 Rw2G036160 Rw4G019830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 96
AccB1I GGYRCC 1 cut(s) 350
AciI CCGC 1 cut(s) 458
AcsI RAATTY 2 cut(s) 175, 338
AcuI CTGAAG 1 cut(s) 135
AfaI GTAC 2 cut(s) 377, 417
AfiI CCNNNNNNNGG 1 cut(s) 360
AgsI TTSAA 1 cut(s) 440
AluBI AGCT 1 cut(s) 91
AluI AGCT 1 cut(s) 91
Alw26I GTCTC 1 cut(s) 445
ApoI RAATTY 2 cut(s) 175, 338
BanI GGYRCC 1 cut(s) 350
BanII GRGCYC 1 cut(s) 79
BccI CCATC 1 cut(s) 79
BcoDI GTCTC 1 cut(s) 445
BfmI CTRYAG 1 cut(s) 225
BmcAI AGTACT 1 cut(s) 377
BmiI GGNNCC 1 cut(s) 352
BmsI GCATC 2 cut(s) 229, 441
Bpu10I CCTNAGC 1 cut(s) 469
BsaAI YACGTR 1 cut(s) 428
BsaJI CCNNGG 1 cut(s) 284
Bsc4I CCNNNNNNNGG 1 cut(s) 360
BseDI CCNNGG 1 cut(s) 284
BseGI GGATG 1 cut(s) 220
BseLI CCNNNNNNNGG 1 cut(s) 360
BseMII CTCAG 1 cut(s) 164
BshNI GGYRCC 1 cut(s) 350
BslFI GGGAC 1 cut(s) 503
BslI CCNNNNNNNGG 1 cut(s) 360
BsmAI GTCTC 1 cut(s) 445
BsmFI GGGAC 1 cut(s) 503
Bsp1286I GDGCHC 1 cut(s) 79
BspACI CCGC 1 cut(s) 458
BspCNI CTCAG 1 cut(s) 163
BspLI GGNNCC 1 cut(s) 352
BspMAI CTGCAG 1 cut(s) 229
BspT107I GGYRCC 1 cut(s) 350
BssECI CCNNGG 1 cut(s) 284
BssT1I CCWWGG 1 cut(s) 284
Bst4CI ACNGT 2 cut(s) 169, 494
BstBAI YACGTR 1 cut(s) 428
BstDEI CTNAG 3 cut(s) 150, 292, 469
BstF5I GGATG 1 cut(s) 220
BstMAI GTCTC 1 cut(s) 445
BstMWI GCNNNNNNNGC 1 cut(s) 233
BstSFI CTRYAG 1 cut(s) 225
BstSNI TACGTA 1 cut(s) 428
BtsCI GGATG 1 cut(s) 220
BtsIMutI CAGTG 1 cut(s) 174
Csp6I GTAC 2 cut(s) 376, 416
CviJI RGCY 6 cut(s) 77, 91, 236, 321, 391, 468
CviKI_1 RGCY 6 cut(s) 77, 91, 236, 321, 391, 468
CviQI GTAC 2 cut(s) 376, 416
DdeI CTNAG 3 cut(s) 150, 292, 469
Eco105I TACGTA 1 cut(s) 428
Eco130I CCWWGG 1 cut(s) 284
Eco24I GRGCYC 1 cut(s) 79
Eco32I GATATC 1 cut(s) 327
Eco57I CTGAAG 1 cut(s) 135
EcoRV GATATC 1 cut(s) 327
EcoT14I CCWWGG 1 cut(s) 284
EcoT38I GRGCYC 1 cut(s) 79
ErhI CCWWGG 1 cut(s) 284
FaiI YATR 7 cut(s) 21, 32, 45, 96, 158, 261, 276
FalI AAGNNNNNCTT 2 cut(s) 362, 394
FaqI GGGAC 1 cut(s) 503
FokI GGATG 1 cut(s) 207
FriOI GRGCYC 1 cut(s) 79
HinfI GANTC 1 cut(s) 145
Hpy166II GTNNAC 1 cut(s) 205
Hpy188III TCNNGA 2 cut(s) 361, 407
Hpy8I GTNNAC 1 cut(s) 205
HpyAV CCTTC 3 cut(s) 24, 325, 434
HpyCH4III ACNGT 2 cut(s) 169, 494
HpyCH4IV ACGT 1 cut(s) 427
HpyCH4V TGCA 1 cut(s) 227
HpyF10VI GCNNNNNNNGC 1 cut(s) 233
HpyF3I CTNAG 3 cut(s) 150, 292, 469
HpySE526I ACGT 1 cut(s) 427
LmnI GCTCC 1 cut(s) 88
LpnPI CCDG 7 cut(s) 81, 222, 237, 323, 346, 432, 449
LweI GCATC 2 cut(s) 229, 441
MaeII ACGT 1 cut(s) 427
MboII GAAGA 2 cut(s) 128, 184
MfeI CAATTG 1 cut(s) 503
MhlI GDGCHC 1 cut(s) 79
MluCI AATT 8 cut(s) 100, 161, 175, 256, 338, 422, 446, 503
MmeI TCCRAC 1 cut(s) 89
MnlI CCTC 2 cut(s) 34, 159
MseI TTAA 1 cut(s) 164
MunI CAATTG 1 cut(s) 503
MwoI GCNNNNNNNGC 1 cut(s) 233
NlaIV GGNNCC 1 cut(s) 352
PfeI GAWTC 1 cut(s) 145
Ppu21I YACGTR 1 cut(s) 428
PsiI TTATAA 1 cut(s) 96
PspN4I GGNNCC 1 cut(s) 352
PstI CTGCAG 1 cut(s) 229
RsaI GTAC 2 cut(s) 377, 417
RsaNI GTAC 2 cut(s) 376, 416
SaqAI TTAA 1 cut(s) 164
ScaI AGTACT 1 cut(s) 377
SduI GDGCHC 1 cut(s) 79
SetI ASST 4 cut(s) 93, 290, 421, 430
SfaNI GCATC 2 cut(s) 229, 441
SfcI CTRYAG 1 cut(s) 225
SnaBI TACGTA 1 cut(s) 428
Sse9I AATT 8 cut(s) 100, 161, 175, 256, 338, 422, 446, 503
SsiI CCGC 1 cut(s) 458
StyI CCWWGG 1 cut(s) 284
TaaI ACNGT 2 cut(s) 169, 494
TaiI ACGT 1 cut(s) 430
TaqI TCGA 4 cut(s) 55, 182, 314, 329
TasI AATT 8 cut(s) 100, 161, 175, 256, 338, 422, 446, 503
TatI WGTACW 1 cut(s) 375
TfiI GAWTC 1 cut(s) 145
Tru1I TTAA 1 cut(s) 164
Tru9I TTAA 1 cut(s) 164
TscAI CASTG 1 cut(s) 174
TspDTI ATGAA 2 cut(s) 47, 78
TspRI CASTG 1 cut(s) 174
XapI RAATTY 2 cut(s) 175, 338
ZrmI AGTACT 1 cut(s) 377
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.