RLG00000007639
ERF Family

Mitochondrial transcription termination factor family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0000263
Physical Location & Seq
Reverse (-)
19301702 .. 19305388
3687 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000007639

Sequence Viewer

Length: 1287 bp
ATGTCCCTTGAAAATGAGAAGTTTCATGAAGCTGTCAAGAGGGTCATGAGTTTGGGATTCCACCCTTTGTATGCAACGACATTCATGAAAGCACTATTTGTTATCTCTATAACTGATTCATCAAAATGGGCAGAAAAGATGGATTTCTATAAAAAGTGTGGTTGGAGTGAAGATGACTTTTTGGTGGCATTTAGAAAGAATCCCTTCTTTATGAACATGACAGAGAAGAATATTTCTGGTAAAATGGATTTGATTGTCAACAAAATGGCTTTGGTTCAGCCTGCAGATTTGGCTCACTATCCGACTGTCCTAACTTATAGTTTGGAGAAATGGATAATACCTAGGTGTTCAGTTATTAGAGTTCTCCTATTGAAGGGTTTAATAACAAGGGGAGAATTCAATTTCAACACTTTGATGGGCCTCAATAAGAAGAACTTCTTGAAGAGATATCAGTTTCTGTTCACCCTTCTCAGAAAAGAAGTCCTAGTTCACTTGTCTCCTCCTCCAGCTTTTGCCAAGCTTAAGGTGGTTCCCGATTTTGTTCACGGCACCTTACTGCAGAAGGAAGACATGTTGATCTGGAATGTGCAAAGTTTGGAGAACCCTGATATTCGTGGTTTCTTTAAGAACTCCTATCGGCTGTTGACGGTCAAATCAGTAAGCAACATTGATCTGAATGTTTCAGTTCTCAGAGAACTTAAAGCACCAGAATCTTTAATCTCTTACTATGCAACATGTCAGCCATTGTTAATGTCCCTTGAAAACGAGAAGTTTCACCAAAATGTCAACAAGGTCATGAGTTTGGGATTCCACCCTTCAACATCAACGACGTTCATGAAAGCATTATTTGTGATCTCCACTACGGATTCATCAAAATGGGCACAAAAGATGGATTTCTATAAAAAGTGTGGTTGGACTGAAGATGACTTTTTGGTGGCATTTAGTAAGAATCCCCTCTTTATGAACATGACAGAGAAGAATATTTCTAGTAAAATGGATTTTATTGTCAACAAAATGGCTTTGGTTCAGCCTGCAGATTTGGCTCATTATCCGACTGTCCTAACTTACAGTTTGGAGAATCGGATAATACCTAGGGCTTCAGTTATTCAAGTTCTCCTGATGAAGGGCTTAATAACAAGGGGAGATTTTTCTTTCAACAGCTTGATGATATACAATTATAAGAAGTTCTTGGATAAGTTTGTGGTCCCATATCAACCACAAGTACCTGAATTGTTGAGCATCTTTGCAGGGAAAATGGGTCTTGTGGAACTGGGCATTAGGGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
mTERF

Protein Analysis

429

Amino Acids

49.37

Weight (kDa)

9.42

Isoelectric Point (pI)

40.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
mTERF PF02536 38 - 146 2.8e-12 mTERF
mTERF PF02536 217 - 396 6.9e-17 mTERF
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000263)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G21150 AT1G21150 AT1G21150
fragaria_vesca FvH4_4g17900 FvH4_6g26110 FvH4_6g33880 FvH4_6g33900 FvH4_6g34011 FvH4_6g34011 FvH4_6g34011 FvH4_6g34011 FvH4_6g34030 FvH4_6g34040 FvH4_6g34070 FvH4_6g34070 FvH4_7g12830
malus_domestica MD09G1189800.v1.1 MD09G1189900.v1.1 MD09G1190000.v1.1 MD14G1088800.v1.1 MD14G1088900.v1.1 MD17G1172900.v1.1
pyrus_communis pycom07g03460 pycom09g10650 pycom14g07860
rosa_chinensis RchiOBHm_Chr1g0351891 RchiOBHm_Chr1g0351901 RchiOBHm_Chr2g0143771 RchiOBHm_Chr2g0143861 RchiOBHm_Chr2g0143881 RchiOBHm_Chr2g0143941 RchiOBHm_Chr2g0143951 RchiOBHm_Chr2g0144081 RchiOBHm_Chr2g0144091 RchiOBHm_Chr2g0144211 RchiOBHm_Chr2g0144231 RchiOBHm_Chr2g0144241 RchiOBHm_Chr2g0144291 RchiOBHm_Chr2g0144301 RchiOBHm_Chr2g0144311 RchiOBHm_Chr2g0144331 RchiOBHm_Chr2g0144341 RchiOBHm_Chr4g0422021 RchiOBHm_Chr4g0422031
rosa_laevigata RLG00000007639 RLG00000020063 RLG00000020071 RLG00000020072 RLG00000020074
rosa_multiflora Rmu_co8214640.1_g000001 Rmu_co8471033.1_g000001 Rmu_sc0000789.1_g000002 Rmu_sc0001321.1_g000001 Rmu_sc0004340.1_g000001 Rmu_sc0004897.1_g000001 Rmu_sc0007105.1_g000005 Rmu_sc0009498.1_g000001 Rmu_sc0009498.1_g000002 Rmu_sc0019136.1_g000001 Rmu_sc0020327.1_g000002 Rmu_sc0020327.1_g000003 Rmu_sc0022905.1_g000001 Rmu_sc0032602.1_g000003 Rmu_sc0032602.1_g000004
rosa_roxburghii Rroxscaffold_2G00101380 Rroxscaffold_2G00101390 Rroxscaffold_2G00101400 Rroxscaffold_2G00101410 Rroxscaffold_2G00101480 Rroxscaffold_2G00101490 Rroxscaffold_4G00303470 Rroxscaffold_5G00364130 Rroxscaffold_5G00364150
rosa_rugosa Rorug01G0222600 Rorug02G0384700 Rorug02G0384800 Rorug02G0385800 Rorug02G0385900 Rorug02G0386000 Rorug02G0386000 Rorug02G0386100 Rorug04G0176700 Rorug04G0176800.1
rosa_samantha Rh1AG236500 Rh1AG236600 Rh1BG206900 Rh1CG221000 Rh1CG221100 Rh2BG444800 Rh2BG444900 Rh2BG446600 Rh2BG446700 Rh2BG447600 Rh2BG448100 Rh2BG448400 Rh2BG448500 Rh2BG448700 Rh2BG448800 Rh2CG423500 Rh2CG423600 Rh2CG424800 Rh2CG424900 Rh2CG425100 Rh2CG425200 Rh2DG455200 Rh2DG455300 Rh2DG456900 Rh2DG457000 Rh2DG457100 Rh2DG457600 Rh2DG457900 Rh2DG458000 Rh2DG458300 Rh2DG458400 Rh4AG236100 Rh4AG236200 Rh4BG239200 Rh4CG250900 Rh4CG251100
rosa_wichuraiana Rw0G000400 Rw0G015990 Rw0G017200 Rw1G020580 Rw2G033310 Rw2G035630 Rw2G035640 Rw2G035790 Rw2G035800 Rw2G035840 Rw2G036160 Rw4G019830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1179
AccB1I GGYRCC 1 cut(s) 548
AcsI RAATTY 1 cut(s) 395
AcuI CTGAAG 2 cut(s) 939, 1083
AfaI GTAC 1 cut(s) 1224
AfiI CCNNNNNNNGG 2 cut(s) 373, 1123
AflII CTTAAG 1 cut(s) 521
AflIII ACRYGT 2 cut(s) 570, 734
AgsI TTSAA 9 cut(s) 11, 373, 400, 406, 442, 761, 819, 1109, 1156
AluBI AGCT 4 cut(s) 32, 509, 520, 1161
AluI AGCT 4 cut(s) 32, 509, 520, 1161
Alw26I GTCTC 1 cut(s) 501
AlwNI CAGNNNCTG 1 cut(s) 457
AoxI GGCC 1 cut(s) 418
ApoI RAATTY 1 cut(s) 395
Asp700I GAANNNNTTC 2 cut(s) 203, 434
AspA2I CCTAGG 2 cut(s) 341, 1091
AspS9I GGNCC 2 cut(s) 418, 1204
AsuHPI GGTGA 2 cut(s) 454, 767
AvaII GGWCC 1 cut(s) 1204
AvrII CCTAGG 2 cut(s) 341, 1091
BaeGI GKGCMC 1 cut(s) 883
BanI GGYRCC 1 cut(s) 548
BbsI GAAGAC 1 cut(s) 573
BccI CCATC 3 cut(s) 133, 409, 883
BceAI ACGGC 1 cut(s) 562
BcoDI GTCTC 1 cut(s) 501
BfaI CTAG 4 cut(s) 342, 485, 987, 1092
BfmI CTRYAG 3 cut(s) 282, 557, 1032
BfrI CTTAAG 1 cut(s) 521
BlnI CCTAGG 2 cut(s) 341, 1091
Bme18I GGWCC 1 cut(s) 1204
BmgT120I GGNCC 2 cut(s) 418, 1204
BmiI GGNNCC 3 cut(s) 531, 550, 1206
BmrI ACTGGG 1 cut(s) 1280
BmsI GCATC 1 cut(s) 1248
BmuI ACTGGG 1 cut(s) 1280
BpiI GAAGAC 1 cut(s) 573
BpmI CTGGAG 1 cut(s) 489
BsaJI CCNNGG 2 cut(s) 341, 1091
Bsc4I CCNNNNNNNGG 2 cut(s) 373, 1123
Bse1I ACTGG 1 cut(s) 1275
BseDI CCNNGG 2 cut(s) 341, 1091
BseLI CCNNNNNNNGG 2 cut(s) 373, 1123
BseMII CTCAG 2 cut(s) 484, 703
BseNI ACTGG 1 cut(s) 1275
BseRI GAGGAG 2 cut(s) 489, 492
BseSI GKGCMC 1 cut(s) 883
BshFI GGCC 1 cut(s) 420
BshNI GGYRCC 1 cut(s) 548
BslFI GGGAC 2 cut(s) 739, 1190
BslI CCNNNNNNNGG 2 cut(s) 373, 1123
BsmAI GTCTC 1 cut(s) 501
BsmFI GGGAC 2 cut(s) 739, 1190
BsnI GGCC 1 cut(s) 420
Bsp1286I GDGCHC 1 cut(s) 883
Bsp143I GATC 3 cut(s) 576, 670, 852
BspANI GGCC 1 cut(s) 420
BspCNI CTCAG 2 cut(s) 483, 702
BspHI TCATGA 5 cut(s) 25, 45, 84, 795, 834
BspLI GGNNCC 3 cut(s) 531, 550, 1206
BspMAI CTGCAG 3 cut(s) 286, 561, 1036
BspT107I GGYRCC 1 cut(s) 548
BspTI CTTAAG 1 cut(s) 521
BsrI ACTGG 1 cut(s) 1275
BssECI CCNNGG 2 cut(s) 341, 1091
BssMI GATC 3 cut(s) 576, 670, 852
BssT1I CCWWGG 2 cut(s) 341, 1091
Bst4CI ACNGT 4 cut(s) 307, 649, 1057, 1070
Bst6I CTCTTC 1 cut(s) 437
BstAFI CTTAAG 1 cut(s) 521
BstC8I GCNNGC 2 cut(s) 282, 1032
BstDEI CTNAG 2 cut(s) 470, 689
BstENI CCTNNNNNAGG 2 cut(s) 371, 1121
BstKTI GATC 3 cut(s) 579, 673, 855
BstMAI GTCTC 1 cut(s) 501
BstMBI GATC 3 cut(s) 576, 670, 852
BstMWI GCNNNNNNNGC 2 cut(s) 290, 1040
BstNSI RCATGY 2 cut(s) 574, 738
BstSFI CTRYAG 3 cut(s) 282, 557, 1032
BstSLI GKGCMC 1 cut(s) 883
BstV2I GAAGAC 1 cut(s) 573
BsuRI GGCC 1 cut(s) 420
Cac8I GCNNGC 2 cut(s) 282, 1032
CaiI CAGNNNCTG 1 cut(s) 457
CciI TCATGA 5 cut(s) 25, 45, 84, 795, 834
Cfr13I GGNCC 2 cut(s) 418, 1204
Csp6I GTAC 1 cut(s) 1223
CviAII CATG 9 cut(s) 26, 46, 85, 217, 571, 735, 796, 835, 967
CviQI GTAC 1 cut(s) 1223
DdeI CTNAG 2 cut(s) 470, 689
DpnI GATC 3 cut(s) 578, 672, 854
DpnII GATC 3 cut(s) 576, 670, 852
Eam1104I CTCTTC 1 cut(s) 437
EarI CTCTTC 1 cut(s) 437
Eco130I CCWWGG 2 cut(s) 341, 1091
Eco32I GATATC 1 cut(s) 449
Eco47I GGWCC 1 cut(s) 1204
Eco57I CTGAAG 2 cut(s) 939, 1083
EcoNI CCTNNNNNAGG 2 cut(s) 371, 1121
EcoRI GAATTC 1 cut(s) 395
EcoRV GATATC 1 cut(s) 449
EcoT14I CCWWGG 2 cut(s) 341, 1091
ErhI CCWWGG 2 cut(s) 341, 1091
FaeI CATG 9 cut(s) 29, 49, 88, 220, 574, 738, 799, 838, 970
FalI AAGNNNNNCTT 8 cut(s) 188, 220, 419, 451, 422, 454, 1172, 1204
FaqI GGGAC 2 cut(s) 739, 1190
FatI CATG 9 cut(s) 25, 45, 84, 216, 570, 734, 795, 834, 966
FspBI CTAG 4 cut(s) 342, 485, 987, 1092
GsuI CTGGAG 1 cut(s) 489
HaeIII GGCC 1 cut(s) 420
Hin1II CATG 9 cut(s) 29, 49, 88, 220, 574, 738, 799, 838, 970
HincII GTYRAC 4 cut(s) 259, 645, 787, 1009
HindII GTYRAC 4 cut(s) 259, 645, 787, 1009
HindIII AAGCTT 1 cut(s) 518
HinfI GANTC 8 cut(s) 57, 116, 199, 710, 807, 866, 949, 1078
HphI GGTGA 2 cut(s) 454, 767
Hpy166II GTNNAC 7 cut(s) 259, 462, 490, 544, 645, 787, 1009
Hpy188I TCNGA 6 cut(s) 303, 473, 675, 692, 1053, 1083
Hpy8I GTNNAC 7 cut(s) 259, 462, 490, 544, 645, 787, 1009
Hpy99I CGWCG 1 cut(s) 832
HpyAV CCTTC 6 cut(s) 214, 367, 476, 556, 825, 1117
HpyCH4III ACNGT 4 cut(s) 307, 649, 1057, 1070
HpyCH4IV ACGT 1 cut(s) 830
HpyCH4V TGCA 7 cut(s) 74, 284, 559, 589, 731, 1034, 1247
HpyF10VI GCNNNNNNNGC 2 cut(s) 290, 1040
HpyF3I CTNAG 2 cut(s) 470, 689
HpySE526I ACGT 1 cut(s) 830
Hsp92II CATG 9 cut(s) 29, 49, 88, 220, 574, 738, 799, 838, 970
Kzo9I GATC 3 cut(s) 576, 670, 852
LweI GCATC 1 cut(s) 1248
MaeI CTAG 4 cut(s) 342, 485, 987, 1092
MaeII ACGT 1 cut(s) 830
MalI GATC 3 cut(s) 578, 672, 854
MboI GATC 3 cut(s) 576, 670, 852
MboII GAAGA 7 cut(s) 182, 238, 442, 454, 578, 932, 988
MhlI GDGCHC 1 cut(s) 883
MluCI AATT 4 cut(s) 395, 400, 1174, 1229
MmeI TCCRAC 4 cut(s) 143, 326, 893, 1076
MnlI CCTC 5 cut(s) 33, 431, 510, 513, 965
MroXI GAANNNNTTC 2 cut(s) 203, 434
MseI TTAA 7 cut(s) 380, 522, 624, 699, 716, 749, 1130
MslI CAYNNNNRTG 4 cut(s) 124, 413, 780, 874
MspCI CTTAAG 1 cut(s) 521
MwoI GCNNNNNNNGC 2 cut(s) 290, 1040
NdeII GATC 3 cut(s) 576, 670, 852
NlaIII CATG 9 cut(s) 29, 49, 88, 220, 574, 738, 799, 838, 970
NlaIV GGNNCC 3 cut(s) 531, 550, 1206
NspI RCATGY 2 cut(s) 574, 738
PagI TCATGA 5 cut(s) 25, 45, 84, 795, 834
PciI ACATGT 2 cut(s) 570, 734
PdmI GAANNNNTTC 2 cut(s) 203, 434
PfeI GAWTC 8 cut(s) 57, 116, 199, 710, 807, 866, 949, 1078
PscI ACATGT 2 cut(s) 570, 734
PsiI TTATAA 1 cut(s) 1179
PspN4I GGNNCC 3 cut(s) 531, 550, 1206
PspPI GGNCC 2 cut(s) 418, 1204
PstI CTGCAG 3 cut(s) 286, 561, 1036
PstNI CAGNNNCTG 1 cut(s) 457
RsaI GTAC 1 cut(s) 1224
RsaNI GTAC 1 cut(s) 1223
RseI CAYNNNNRTG 4 cut(s) 124, 413, 780, 874
SaqAI TTAA 7 cut(s) 380, 522, 624, 699, 716, 749, 1130
Sau3AI GATC 3 cut(s) 576, 670, 852
Sau96I GGNCC 2 cut(s) 418, 1204
SduI GDGCHC 1 cut(s) 883
SfaNI GCATC 1 cut(s) 1248
SfcI CTRYAG 3 cut(s) 282, 557, 1032
SinI GGWCC 1 cut(s) 1204
SmiMI CAYNNNNRTG 4 cut(s) 124, 413, 780, 874
SmlI CTYRAG 1 cut(s) 521
SmoI CTYRAG 1 cut(s) 521
Sse9I AATT 4 cut(s) 395, 400, 1174, 1229
SspI AATATT 2 cut(s) 232, 982
SspMI CTAG 4 cut(s) 342, 485, 987, 1092
StyI CCWWGG 2 cut(s) 341, 1091
TaaI ACNGT 4 cut(s) 307, 649, 1057, 1070
TaiI ACGT 1 cut(s) 833
TasI AATT 4 cut(s) 395, 400, 1174, 1229
TfiI GAWTC 8 cut(s) 57, 116, 199, 710, 807, 866, 949, 1078
Tru1I TTAA 7 cut(s) 380, 522, 624, 699, 716, 749, 1130
Tru9I TTAA 7 cut(s) 380, 522, 624, 699, 716, 749, 1130
TspGWI ACGGA 1 cut(s) 878
Vha464I CTTAAG 1 cut(s) 521
VpaK11BI GGWCC 1 cut(s) 1204
XagI CCTNNNNNAGG 2 cut(s) 371, 1121
XapI RAATTY 1 cut(s) 395
XceI RCATGY 2 cut(s) 574, 738
XcmI CCANNNNNNNNNTGG 1 cut(s) 523
XmaJI CCTAGG 2 cut(s) 341, 1091
XmnI GAANNNNTTC 2 cut(s) 203, 434
XspI CTAG 4 cut(s) 342, 485, 987, 1092
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.