RchiOBHm_Chr2g0143941
ERF Family

mTERF

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000263
Physical Location & Seq
Reverse (-)
61543548 .. 61545871
2324 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ51398

Sequence Viewer

Length: 978 bp
ATGAAGGTACGCTTCGACACCCCAGAAAAACCCGACTCTGTTATTAAGCTTTTTAAAGACTATGGACTCAGTGATGCCCACATCTCTGACATTGTTAAGAAATGCCCAGTTTTGCTTGTATCCAATGCTGAAAAGACCCTTTGGCCAAAACTCCAGTTTTTCACTTCCATTGGCCTTTCGGGCAATGACCTTGCCCGGATCTTCCGTGTCAACGCAAATATCTTGACATTGAGCTTAGAGAGAAGTATTAGACCTTGTTATGATATTATGAAAACTCTAGAAATACCTGAGCATAAGGTCCCTTATTTCATTAGCAACTATTATATGTTTAACCCCAAAGTATTGAGCAATGTACCTCACAACACTTTGATTCTGAGAGCGCATCAGGTGCCAGAAGCGTCATTTCCTCTGTGGGTGTGTTCTCATTTGCTTGCACTGTCATTTGACTCTGAGAAGGTTAAGACAAATGTCGAGAAGGTCATCAGCATGGGATTTGACCCTTCGTCTACTACATTCATGAAAGCTTTGTATGTGGTATCGGTGACCAATGCAGCAAAGTGGAAACACAAGATGGAATTTTATGAGAAGTGGGGTTGGACTGAAGATGATGTGTTGTTGGCATTTAGAAAGAATCCCATGTTTATGAGCTTCAGTGTGAAGAATATTTCAGCTAAAATGGATTTTCTTTTGAATAAAATGGGTTGCCAGCCTGCAGATCTGGCTGCACGTCCAGATATTCTGACTTATAGTTTGGAGAAGCGAATCATACCTAGGTGTTCAGTCATCAGATTTCTCCAGTTAAAGGGCTTAATTGTCAAGGAAGATTTATATATAATTAGCATTGTGCACAAAAACGAGAAGTGGTTCTTGGAAAGGTTTGTGATCAAATATGAAGAACAAGCACCTGAATTGCAGAGCATCTTACAGGGGAAAATGGGTCTAGCCGAATTTGGTTTAGGATTCGACGAAAGTGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
mTERF

Protein Analysis

325

Amino Acids

37.39

Weight (kDa)

8.88

Isoelectric Point (pI)

44.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
mTERF PF02536 15 - 104 3e-11 mTERF
mTERF PF02536 146 - 289 3.8e-16 mTERF
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000263)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G21150 AT1G21150 AT1G21150
fragaria_vesca FvH4_4g17900 FvH4_6g26110 FvH4_6g33880 FvH4_6g33900 FvH4_6g34011 FvH4_6g34011 FvH4_6g34011 FvH4_6g34011 FvH4_6g34030 FvH4_6g34040 FvH4_6g34070 FvH4_6g34070 FvH4_7g12830
malus_domestica MD09G1189800.v1.1 MD09G1189900.v1.1 MD09G1190000.v1.1 MD14G1088800.v1.1 MD14G1088900.v1.1 MD17G1172900.v1.1
pyrus_communis pycom07g03460 pycom09g10650 pycom14g07860
rosa_chinensis RchiOBHm_Chr1g0351891 RchiOBHm_Chr1g0351901 RchiOBHm_Chr2g0143771 RchiOBHm_Chr2g0143861 RchiOBHm_Chr2g0143881 RchiOBHm_Chr2g0143941 RchiOBHm_Chr2g0143951 RchiOBHm_Chr2g0144081 RchiOBHm_Chr2g0144091 RchiOBHm_Chr2g0144211 RchiOBHm_Chr2g0144231 RchiOBHm_Chr2g0144241 RchiOBHm_Chr2g0144291 RchiOBHm_Chr2g0144301 RchiOBHm_Chr2g0144311 RchiOBHm_Chr2g0144331 RchiOBHm_Chr2g0144341 RchiOBHm_Chr4g0422021 RchiOBHm_Chr4g0422031
rosa_laevigata RLG00000007639 RLG00000020063 RLG00000020071 RLG00000020072 RLG00000020074
rosa_multiflora Rmu_co8214640.1_g000001 Rmu_co8471033.1_g000001 Rmu_sc0000789.1_g000002 Rmu_sc0001321.1_g000001 Rmu_sc0004340.1_g000001 Rmu_sc0004897.1_g000001 Rmu_sc0007105.1_g000005 Rmu_sc0009498.1_g000001 Rmu_sc0009498.1_g000002 Rmu_sc0019136.1_g000001 Rmu_sc0020327.1_g000002 Rmu_sc0020327.1_g000003 Rmu_sc0022905.1_g000001 Rmu_sc0032602.1_g000003 Rmu_sc0032602.1_g000004
rosa_roxburghii Rroxscaffold_2G00101380 Rroxscaffold_2G00101390 Rroxscaffold_2G00101400 Rroxscaffold_2G00101410 Rroxscaffold_2G00101480 Rroxscaffold_2G00101490 Rroxscaffold_4G00303470 Rroxscaffold_5G00364130 Rroxscaffold_5G00364150
rosa_rugosa Rorug01G0222600 Rorug02G0384700 Rorug02G0384800 Rorug02G0385800 Rorug02G0385900 Rorug02G0386000 Rorug02G0386000 Rorug02G0386100 Rorug04G0176700 Rorug04G0176800.1
rosa_samantha Rh1AG236500 Rh1AG236600 Rh1BG206900 Rh1CG221000 Rh1CG221100 Rh2BG444800 Rh2BG444900 Rh2BG446600 Rh2BG446700 Rh2BG447600 Rh2BG448100 Rh2BG448400 Rh2BG448500 Rh2BG448700 Rh2BG448800 Rh2CG423500 Rh2CG423600 Rh2CG424800 Rh2CG424900 Rh2CG425100 Rh2CG425200 Rh2DG455200 Rh2DG455300 Rh2DG456900 Rh2DG457000 Rh2DG457100 Rh2DG457600 Rh2DG457900 Rh2DG458000 Rh2DG458300 Rh2DG458400 Rh4AG236100 Rh4AG236200 Rh4BG239200 Rh4CG250900 Rh4CG251100
rosa_wichuraiana Rw0G000400 Rw0G015990 Rw0G017200 Rw1G020580 Rw2G033310 Rw2G035630 Rw2G035640 Rw2G035790 Rw2G035800 Rw2G035840 Rw2G036160 Rw4G019830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 388
AccI GTMKAC 1 cut(s) 506
AclWI GGATC 1 cut(s) 206
AcoI YGGCCR 1 cut(s) 143
AcsI RAATTY 2 cut(s) 575, 947
AcuI CTGAAG 2 cut(s) 621, 634
AfaI GTAC 2 cut(s) 9, 354
AfiI CCNNNNNNNGG 1 cut(s) 802
AgsI TTSAA 1 cut(s) 691
AhdI GACNNNNNGTC 1 cut(s) 502
AjiI CACGTC 1 cut(s) 728
AjuI GAANNNNNNNTTGG 2 cut(s) 851, 883
AluBI AGCT 5 cut(s) 49, 234, 524, 648, 671
AluI AGCT 5 cut(s) 49, 234, 524, 648, 671
Alw21I GWGCWC 1 cut(s) 849
Alw44I GTGCAC 1 cut(s) 845
AlwI GGATC 1 cut(s) 206
AoxI GGCC 2 cut(s) 143, 172
ApaLI GTGCAC 1 cut(s) 845
ApeKI GCWGC 2 cut(s) 551, 722
ApoI RAATTY 2 cut(s) 575, 947
ArsI GACNNNNNNTTYG 2 cut(s) 733, 765
Asp700I GAANNNNTTC 1 cut(s) 863
AspA2I CCTAGG 1 cut(s) 770
AspLEI GCGC 1 cut(s) 382
AspS9I GGNCC 1 cut(s) 298
AsuC2I CCSGG 1 cut(s) 196
AsuHPI GGTGA 1 cut(s) 553
AvaII GGWCC 1 cut(s) 298
AvrII CCTAGG 1 cut(s) 770
BaeGI GKGCMC 1 cut(s) 849
BalI TGGCCA 1 cut(s) 145
BanI GGYRCC 1 cut(s) 388
Bbv12I GWGCWC 1 cut(s) 849
BbvI GCAGC 2 cut(s) 563, 709
BccI CCATC 1 cut(s) 565
BciVI GTATCC 1 cut(s) 130
BclI TGATCA 1 cut(s) 882
BcnI CCSGG 1 cut(s) 196
BfaI CTAG 3 cut(s) 278, 771, 941
BfmI CTRYAG 1 cut(s) 711
BfuI GTATCC 1 cut(s) 130
BglI GCCNNNNNGGC 1 cut(s) 180
BglII AGATCT 1 cut(s) 715
BisI GCNGC 2 cut(s) 552, 723
BlnI CCTAGG 1 cut(s) 770
BlsI GCNGC 2 cut(s) 553, 724
Bme1390I CCNGG 1 cut(s) 196
Bme18I GGWCC 1 cut(s) 298
BmeRI GACNNNNNGTC 1 cut(s) 502
BmgBI CACGTC 1 cut(s) 728
BmgT120I GGNCC 1 cut(s) 298
BmiI GGNNCC 2 cut(s) 300, 390
BmrFI CCNGG 1 cut(s) 196
BmrI ACTGGG 1 cut(s) 101
BmsI GCATC 3 cut(s) 64, 391, 927
BmuI ACTGGG 1 cut(s) 101
BoxI GACNNNNGTC 1 cut(s) 467
BpmI CTGGAG 2 cut(s) 137, 779
Bpu10I CCTNAGC 1 cut(s) 288
BpuMI CCSGG 1 cut(s) 196
BsaJI CCNNGG 1 cut(s) 770
Bsc4I CCNNNNNNNGG 1 cut(s) 802
Bse1I ACTGG 3 cut(s) 107, 154, 796
Bse3DI GCAATG 2 cut(s) 190, 355
BseDI CCNNGG 1 cut(s) 770
BseLI CCNNNNNNNGG 1 cut(s) 802
BseMI GCAATG 2 cut(s) 190, 355
BseMII CTCAG 4 cut(s) 82, 279, 365, 441
BseNI ACTGG 3 cut(s) 107, 154, 796
BseSI GKGCMC 1 cut(s) 849
BseXI GCAGC 2 cut(s) 563, 709
BsgI GTGCAG 1 cut(s) 708
BshFI GGCC 2 cut(s) 145, 174
BshNI GGYRCC 1 cut(s) 388
BsiHKAI GWGCWC 1 cut(s) 849
BsiSI CCGG 1 cut(s) 196
BslFI GGGAC 1 cut(s) 284
BslI CCNNNNNNNGG 1 cut(s) 802
BsmFI GGGAC 1 cut(s) 284
BsnI GGCC 2 cut(s) 145, 174
Bsp1286I GDGCHC 1 cut(s) 849
Bsp143I GATC 3 cut(s) 198, 715, 882
BspANI GGCC 2 cut(s) 145, 174
BspCNI CTCAG 4 cut(s) 81, 280, 366, 442
BspHI TCATGA 1 cut(s) 516
BspLI GGNNCC 2 cut(s) 300, 390
BspMAI CTGCAG 1 cut(s) 715
BspPI GGATC 1 cut(s) 206
BspT107I GGYRCC 1 cut(s) 388
BsrDI GCAATG 2 cut(s) 190, 355
BsrI ACTGG 3 cut(s) 107, 154, 796
BssECI CCNNGG 1 cut(s) 770
BssMI GATC 3 cut(s) 198, 715, 882
BssT1I CCWWGG 1 cut(s) 770
Bst4CI ACNGT 1 cut(s) 438
BstAPI GCANNNNNTGC 1 cut(s) 388
BstC8I GCNNGC 3 cut(s) 432, 707, 711
BstDEI CTNAG 5 cut(s) 68, 235, 288, 374, 450
BstEII GGTNACC 1 cut(s) 541
BstHHI GCGC 1 cut(s) 382
BstKTI GATC 3 cut(s) 201, 718, 885
BstMBI GATC 3 cut(s) 198, 715, 882
BstMWI GCNNNNNNNGC 3 cut(s) 180, 388, 719
BstPAI GACNNNNGTC 1 cut(s) 467
BstPI GGTNACC 1 cut(s) 541
BstSCI CCNGG 1 cut(s) 194
BstSFI CTRYAG 1 cut(s) 711
BstSLI GKGCMC 1 cut(s) 849
BstV1I GCAGC 2 cut(s) 563, 709
BstX2I RGATCY 2 cut(s) 198, 715
BstYI RGATCY 2 cut(s) 198, 715
BsuI GTATCC 1 cut(s) 130
BsuRI GGCC 2 cut(s) 145, 174
BtrI CACGTC 1 cut(s) 728
BtsIMutI CAGTG 3 cut(s) 76, 434, 658
Cac8I GCNNGC 3 cut(s) 432, 707, 711
CciI TCATGA 1 cut(s) 516
CfoI GCGC 1 cut(s) 382
Cfr13I GGNCC 1 cut(s) 298
CseI GACGC 1 cut(s) 387
Csp6I GTAC 2 cut(s) 8, 353
CviAII CATG 3 cut(s) 487, 517, 637
CviQI GTAC 2 cut(s) 8, 353
DdeI CTNAG 5 cut(s) 68, 235, 288, 374, 450
DpnI GATC 3 cut(s) 200, 717, 884
DpnII GATC 3 cut(s) 198, 715, 882
DraI TTTAAA 1 cut(s) 55
DriI GACNNNNNGTC 1 cut(s) 502
EaeI YGGCCR 1 cut(s) 143
Eam1105I GACNNNNNGTC 1 cut(s) 502
Eco130I CCWWGG 1 cut(s) 770
Eco47I GGWCC 1 cut(s) 298
Eco57I CTGAAG 2 cut(s) 621, 634
Eco91I GGTNACC 1 cut(s) 541
EcoO109I RGGNCCY 1 cut(s) 298
EcoO65I GGTNACC 1 cut(s) 541
EcoT14I CCWWGG 1 cut(s) 770
ErhI CCWWGG 1 cut(s) 770
FaeI CATG 3 cut(s) 490, 520, 640
FalI AAGNNNNNCTT 3 cut(s) 28, 851, 883
FaqI GGGAC 1 cut(s) 284
FatI CATG 3 cut(s) 486, 516, 636
FbaI TGATCA 1 cut(s) 882
FblI GTMKAC 1 cut(s) 506
Fnu4HI GCNGC 2 cut(s) 552, 723
Fsp4HI GCNGC 2 cut(s) 552, 723
FspBI CTAG 3 cut(s) 278, 771, 941
GlaI GCGC 1 cut(s) 381
GluI GCNGC 2 cut(s) 552, 723
GsuI CTGGAG 2 cut(s) 137, 779
HaeIII GGCC 2 cut(s) 145, 174
HapII CCGG 1 cut(s) 196
HgaI GACGC 1 cut(s) 387
HhaI GCGC 1 cut(s) 382
Hin1II CATG 3 cut(s) 490, 520, 640
Hin6I GCGC 1 cut(s) 380
HinP1I GCGC 1 cut(s) 380
HincII GTYRAC 1 cut(s) 211
HindII GTYRAC 1 cut(s) 211
HindIII AAGCTT 2 cut(s) 47, 522
HinfI GANTC 7 cut(s) 35, 66, 370, 446, 631, 762, 960
HpaII CCGG 1 cut(s) 196
HphI GGTGA 1 cut(s) 553
Hpy166II GTNNAC 3 cut(s) 211, 507, 847
Hpy188I TCNGA 5 cut(s) 88, 375, 451, 741, 788
Hpy188III TCNNGA 5 cut(s) 223, 278, 472, 517, 731
Hpy8I GTNNAC 3 cut(s) 211, 507, 847
Hpy99I CGWCG 1 cut(s) 968
HpyAV CCTTC 3 cut(s) 448, 469, 510
HpyCH4III ACNGT 1 cut(s) 438
HpyCH4IV ACGT 1 cut(s) 727
HpyCH4V TGCA 6 cut(s) 434, 551, 713, 725, 847, 913
HpyF10VI GCNNNNNNNGC 3 cut(s) 180, 388, 719
HpyF3I CTNAG 5 cut(s) 68, 235, 288, 374, 450
HpySE526I ACGT 1 cut(s) 727
Hsp92II CATG 3 cut(s) 490, 520, 640
HspAI GCGC 1 cut(s) 380
Ksp22I TGATCA 1 cut(s) 882
Kzo9I GATC 3 cut(s) 198, 715, 882
Lsp1109I GCAGC 2 cut(s) 563, 709
LweI GCATC 3 cut(s) 64, 391, 927
MaeI CTAG 3 cut(s) 278, 771, 941
MaeII ACGT 1 cut(s) 727
MaeIII GTNAC 1 cut(s) 541
MalI GATC 3 cut(s) 200, 717, 884
MboI GATC 3 cut(s) 198, 715, 882
MboII GAAGA 5 cut(s) 193, 614, 670, 833, 905
MflI RGATCY 2 cut(s) 198, 715
MhlI GDGCHC 1 cut(s) 849
MlsI TGGCCA 1 cut(s) 145
MluCI AATT 5 cut(s) 575, 810, 834, 908, 947
MluNI TGGCCA 1 cut(s) 145
MlyI GAGTC 3 cut(s) 29, 60, 440
MmeI TCCRAC 1 cut(s) 575
MnlI CCTC 2 cut(s) 366, 417
Mox20I TGGCCA 1 cut(s) 145
MroXI GAANNNNTTC 1 cut(s) 863
MscI TGGCCA 1 cut(s) 145
MseI TTAA 7 cut(s) 45, 54, 96, 330, 459, 800, 809
MslI CAYNNNNRTG 2 cut(s) 485, 641
Msp20I TGGCCA 1 cut(s) 145
MspI CCGG 1 cut(s) 196
MspR9I CCNGG 1 cut(s) 196
MwoI GCNNNNNNNGC 3 cut(s) 180, 388, 719
NciI CCSGG 1 cut(s) 196
NdeII GATC 3 cut(s) 198, 715, 882
NlaIII CATG 3 cut(s) 490, 520, 640
NlaIV GGNNCC 2 cut(s) 300, 390
NmuCI GTSAC 1 cut(s) 541
PagI TCATGA 1 cut(s) 516
PdmI GAANNNNTTC 1 cut(s) 863
PfeI GAWTC 4 cut(s) 370, 631, 762, 960
PkrI GCNGC 2 cut(s) 553, 724
PleI GAGTC 3 cut(s) 29, 60, 440
PpsI GAGTC 3 cut(s) 29, 60, 440
PpuMI RGGWCCY 1 cut(s) 298
PshAI GACNNNNGTC 1 cut(s) 467
Psp5II RGGWCCY 1 cut(s) 298
PspEI GGTNACC 1 cut(s) 541
PspN4I GGNNCC 2 cut(s) 300, 390
PspPI GGNCC 1 cut(s) 298
PspPPI RGGWCCY 1 cut(s) 298
PstI CTGCAG 1 cut(s) 715
PsuI RGATCY 2 cut(s) 198, 715
RsaI GTAC 2 cut(s) 9, 354
RsaNI GTAC 2 cut(s) 8, 353
RseI CAYNNNNRTG 2 cut(s) 485, 641
SaqAI TTAA 7 cut(s) 45, 54, 96, 330, 459, 800, 809
SatI GCNGC 2 cut(s) 552, 723
Sau3AI GATC 3 cut(s) 198, 715, 882
Sau96I GGNCC 1 cut(s) 298
SchI GAGTC 3 cut(s) 29, 60, 440
ScrFI CCNGG 1 cut(s) 196
SduI GDGCHC 1 cut(s) 849
SfaNI GCATC 3 cut(s) 64, 391, 927
SfcI CTRYAG 1 cut(s) 711
SinI GGWCC 1 cut(s) 298
SmiMI CAYNNNNRTG 2 cut(s) 485, 641
Sse9I AATT 5 cut(s) 575, 810, 834, 908, 947
SspI AATATT 1 cut(s) 664
SspMI CTAG 3 cut(s) 278, 771, 941
StyD4I CCNGG 1 cut(s) 194
StyI CCWWGG 1 cut(s) 770
TaaI ACNGT 1 cut(s) 438
TaiI ACGT 1 cut(s) 730
TaqI TCGA 3 cut(s) 15, 471, 963
TasI AATT 5 cut(s) 575, 810, 834, 908, 947
TfiI GAWTC 4 cut(s) 370, 631, 762, 960
Tru1I TTAA 7 cut(s) 45, 54, 96, 330, 459, 800, 809
Tru9I TTAA 7 cut(s) 45, 54, 96, 330, 459, 800, 809
TscAI CASTG 3 cut(s) 76, 441, 658
TseFI GTSAC 1 cut(s) 541
TseI GCWGC 2 cut(s) 551, 722
Tsp45I GTSAC 1 cut(s) 541
TspDTI ATGAA 6 cut(s) 17, 284, 298, 505, 533, 906
TspGWI ACGGA 1 cut(s) 194
TspRI CASTG 3 cut(s) 76, 441, 658
VneI GTGCAC 1 cut(s) 845
VpaK11BI GGWCC 1 cut(s) 298
XapI RAATTY 2 cut(s) 575, 947
XbaI TCTAGA 1 cut(s) 277
XmaJI CCTAGG 1 cut(s) 770
XmiI GTMKAC 1 cut(s) 506
XmnI GAANNNNTTC 1 cut(s) 863
XspI CTAG 3 cut(s) 278, 771, 941
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.