Rh2CG423600
ERF Family

mTERF

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0000263
Physical Location & Seq
Reverse (-)
57773222 .. 57774430
1209 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG423600.1

Sequence Viewer

Length: 1209 bp
ATGTTTGATTTTTGCTGTAGAAGATTGCAACTACTATTTCCCAGTTGTAGCATTGCTGTTGATTATTCAGTCACCCATGTTCAAAAGGCACCTCATTTTACAAGATTGTATTCATCAAAATCCCAAGATAAAAAAGATTGCTCTTTTACAGTTTCATACCTTATAAATTCATGTGGGTTATCCCCAGAACTTGCTCTCTCTTTGTCCAAGAGGCATAGGGTACGTTTTGAATCCCCAGAAAAACCAGACGCAGTTGTTAAGCTTTTCAAGGACTATGGATTCAGCAATGCCCACATCTCTGAAATTGTCAAGAAACTCCCAGAGCTGCTCTTAGTCAGTGAGAAGACCCTTTTGCCTAAAATTGAGTTCTTGGGTTCCATTGGAATTACAGGCATTCCCCTGGCTGAGACCCTTTGCGGCAACCCAACTGTGTTGAAAATGAGCTTAGAGAATTGTATTAGACCTTGTTGTGATATCATCAAAACTCTAGGTATCCCTTATGGAAAGGTCCCTCGTTTCATTAAGAGATCGCAGTGGTTGTTTAAGGTCAAAGTACTGAGCAATGTTGCTCGCAATGTTTCAGTACTGAGGTCACTAAAAGTGCCAGAATCCACAATCGATTTGTGTAGGCCCCACAATCTTGTTCCAGTGTCCACTGACGCTGATGAGTTTAATGAAAATGTCAACAAGGTCATCAGTATGGGATTTCCTCCTTCAAGCTGTACATTTATGAAAGCACTGTATGTGATTTCTATGATGGATGAATCAAAATTGGCACAGAGGAAGGAGTTTTATAGGAAGTTTGGTTGGACTGAAGATAATATATTGTTGGCATTTAGAAAGAATCCCATTTTTATGTCCATTTCTGAGAAGAATTTTTTGAGTAAAATGGATTTTCTTGTGAACAAAATGGGTTTACAGCCGGCTGATGTGGCTGGATATCCCAGTGTTCTAACTAATAGTTTGGAGAAATGGATCATACGTAGGTGTTCAGTTATCAGAGTTCTGCTGTTGAAGGGCTTAATACGGAAGGGACAATTTTCTTTACTTGGTACCGCGTTAATGGGCAATAAAGACCTGTTCTTGCATAGATTTGTGAACAAGTATCAAGAGCAAGTACCCGAATTATTGAGCATCTTTCAAGGGGAAATTGGTCTTGCAGAACTGGGCTTAGGATTTGAGGAAAGAGATGGAGTGAAACAAATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
mTERF

Protein Analysis

402

Amino Acids

45.54

Weight (kDa)

9.29

Isoelectric Point (pI)

47.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
mTERF PF02536 87 - 205 5.1e-13 mTERF
mTERF PF02536 250 - 348 4.5e-13 mTERF
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000263)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G21150 AT1G21150 AT1G21150
fragaria_vesca FvH4_4g17900 FvH4_6g26110 FvH4_6g33880 FvH4_6g33900 FvH4_6g34011 FvH4_6g34011 FvH4_6g34011 FvH4_6g34011 FvH4_6g34030 FvH4_6g34040 FvH4_6g34070 FvH4_6g34070 FvH4_7g12830
malus_domestica MD09G1189800.v1.1 MD09G1189900.v1.1 MD09G1190000.v1.1 MD14G1088800.v1.1 MD14G1088900.v1.1 MD17G1172900.v1.1
pyrus_communis pycom07g03460 pycom09g10650 pycom14g07860
rosa_chinensis RchiOBHm_Chr1g0351891 RchiOBHm_Chr1g0351901 RchiOBHm_Chr2g0143771 RchiOBHm_Chr2g0143861 RchiOBHm_Chr2g0143881 RchiOBHm_Chr2g0143941 RchiOBHm_Chr2g0143951 RchiOBHm_Chr2g0144081 RchiOBHm_Chr2g0144091 RchiOBHm_Chr2g0144211 RchiOBHm_Chr2g0144231 RchiOBHm_Chr2g0144241 RchiOBHm_Chr2g0144291 RchiOBHm_Chr2g0144301 RchiOBHm_Chr2g0144311 RchiOBHm_Chr2g0144331 RchiOBHm_Chr2g0144341 RchiOBHm_Chr4g0422021 RchiOBHm_Chr4g0422031
rosa_laevigata RLG00000007639 RLG00000020063 RLG00000020071 RLG00000020072 RLG00000020074
rosa_multiflora Rmu_co8214640.1_g000001 Rmu_co8471033.1_g000001 Rmu_sc0000789.1_g000002 Rmu_sc0001321.1_g000001 Rmu_sc0004340.1_g000001 Rmu_sc0004897.1_g000001 Rmu_sc0007105.1_g000005 Rmu_sc0009498.1_g000001 Rmu_sc0009498.1_g000002 Rmu_sc0019136.1_g000001 Rmu_sc0020327.1_g000002 Rmu_sc0020327.1_g000003 Rmu_sc0022905.1_g000001 Rmu_sc0032602.1_g000003 Rmu_sc0032602.1_g000004
rosa_roxburghii Rroxscaffold_2G00101380 Rroxscaffold_2G00101390 Rroxscaffold_2G00101400 Rroxscaffold_2G00101410 Rroxscaffold_2G00101480 Rroxscaffold_2G00101490 Rroxscaffold_4G00303470 Rroxscaffold_5G00364130 Rroxscaffold_5G00364150
rosa_rugosa Rorug01G0222600 Rorug02G0384700 Rorug02G0384800 Rorug02G0385800 Rorug02G0385900 Rorug02G0386000 Rorug02G0386000 Rorug02G0386100 Rorug04G0176700 Rorug04G0176800.1
rosa_samantha Rh1AG236500 Rh1AG236600 Rh1BG206900 Rh1CG221000 Rh1CG221100 Rh2BG444800 Rh2BG444900 Rh2BG446600 Rh2BG446700 Rh2BG447600 Rh2BG448100 Rh2BG448400 Rh2BG448500 Rh2BG448700 Rh2BG448800 Rh2CG423500 Rh2CG423600 Rh2CG424800 Rh2CG424900 Rh2CG425100 Rh2CG425200 Rh2DG455200 Rh2DG455300 Rh2DG456900 Rh2DG457000 Rh2DG457100 Rh2DG457600 Rh2DG457900 Rh2DG458000 Rh2DG458300 Rh2DG458400 Rh4AG236100 Rh4AG236200 Rh4BG239200 Rh4CG250900 Rh4CG251100
rosa_wichuraiana Rw0G000400 Rw0G015990 Rw0G017200 Rw1G020580 Rw2G033310 Rw2G035630 Rw2G035640 Rw2G035790 Rw2G035800 Rw2G035840 Rw2G036160 Rw4G019830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 164
Acc65I GGTACC 1 cut(s) 1052
AccB1I GGYRCC 2 cut(s) 88, 1052
AccII CGCG 1 cut(s) 1058
AciI CCGC 2 cut(s) 417, 1056
AclWI GGATC 1 cut(s) 983
AcsI RAATTY 2 cut(s) 166, 874
AcuI CTGAAG 1 cut(s) 834
AfaI GTAC 6 cut(s) 222, 555, 585, 724, 1054, 1119
AgsI TTSAA 7 cut(s) 83, 230, 268, 436, 717, 1015, 1142
AjnI CCWGG 1 cut(s) 399
AluBI AGCT 4 cut(s) 262, 325, 444, 720
AluI AGCT 4 cut(s) 262, 325, 444, 720
Alw26I GTCTC 1 cut(s) 401
AlwI GGATC 1 cut(s) 983
AoxI GGCC 1 cut(s) 629
ApeKI GCWGC 1 cut(s) 325
ApoI RAATTY 2 cut(s) 166, 874
Asp718I GGTACC 1 cut(s) 1052
AspS9I GGNCC 2 cut(s) 508, 630
AsuHPI GGTGA 1 cut(s) 64
AvaII GGWCC 1 cut(s) 508
BanI GGYRCC 2 cut(s) 88, 1052
BbsI GAAGAC 1 cut(s) 350
BbvI GCAGC 1 cut(s) 312
BccI CCATC 2 cut(s) 751, 1184
BciT130I CCWGG 1 cut(s) 401
BciVI GTATCC 1 cut(s) 503
BcoDI GTCTC 1 cut(s) 401
BfaI CTAG 1 cut(s) 488
BfmI CTRYAG 1 cut(s) 16
BfuI GTATCC 1 cut(s) 503
BisI GCNGC 2 cut(s) 326, 418
BlsI GCNGC 2 cut(s) 327, 419
BmcAI AGTACT 2 cut(s) 555, 585
Bme1390I CCNGG 1 cut(s) 401
Bme18I GGWCC 1 cut(s) 508
BmgT120I GGNCC 2 cut(s) 508, 630
BmiI GGNNCC 5 cut(s) 90, 376, 510, 632, 1054
BmrFI CCNGG 1 cut(s) 401
BmrI ACTGGG 3 cut(s) 36, 939, 1175
BmsI GCATC 1 cut(s) 1143
BmuI ACTGGG 3 cut(s) 36, 939, 1175
BpiI GAAGAC 1 cut(s) 350
Bpu10I CCTNAGC 1 cut(s) 1171
Bsa29I ATCGAT 1 cut(s) 618
BsaAI YACGTR 1 cut(s) 983
BsaI GGTCTC 1 cut(s) 401
BsaJI CCNNGG 1 cut(s) 399
Bse118I RCCGGY 1 cut(s) 922
Bse1I ACTGG 4 cut(s) 42, 647, 945, 1170
Bse3DI GCAATG 4 cut(s) 51, 292, 568, 580
BseBI CCWGG 1 cut(s) 401
BseCI ATCGAT 1 cut(s) 618
BseDI CCNNGG 1 cut(s) 399
BseGI GGATG 1 cut(s) 766
BseMI GCAATG 4 cut(s) 51, 292, 568, 580
BseMII CTCAG 4 cut(s) 396, 548, 578, 858
BseNI ACTGG 4 cut(s) 42, 647, 945, 1170
BseXI GCAGC 1 cut(s) 312
Bsh1236I CGCG 1 cut(s) 1058
BshFI GGCC 1 cut(s) 631
BshNI GGYRCC 2 cut(s) 88, 1052
BshVI ATCGAT 1 cut(s) 618
BsiSI CCGG 1 cut(s) 923
BslFI GGGAC 2 cut(s) 494, 1047
BsmAI GTCTC 1 cut(s) 401
BsmFI GGGAC 2 cut(s) 494, 1047
BsmI GAATGC 1 cut(s) 393
BsnI GGCC 1 cut(s) 631
Bso31I GGTCTC 1 cut(s) 401
Bsp1407I TGTACA 1 cut(s) 722
Bsp143I GATC 2 cut(s) 527, 975
BspACI CCGC 2 cut(s) 417, 1056
BspANI GGCC 1 cut(s) 631
BspCNI CTCAG 4 cut(s) 397, 549, 579, 859
BspDI ATCGAT 1 cut(s) 618
BspFNI CGCG 1 cut(s) 1058
BspLI GGNNCC 5 cut(s) 90, 376, 510, 632, 1054
BspPI GGATC 1 cut(s) 983
BspT107I GGYRCC 2 cut(s) 88, 1052
BspTNI GGTCTC 1 cut(s) 401
BsrDI GCAATG 4 cut(s) 51, 292, 568, 580
BsrFI RCCGGY 1 cut(s) 922
BsrGI TGTACA 1 cut(s) 722
BsrI ACTGG 4 cut(s) 42, 647, 945, 1170
BssAI RCCGGY 1 cut(s) 922
BssECI CCNNGG 1 cut(s) 399
BssMI GATC 2 cut(s) 527, 975
Bst2UI CCWGG 1 cut(s) 401
Bst4CI ACNGT 3 cut(s) 151, 430, 741
BstAUI TGTACA 1 cut(s) 722
BstBAI YACGTR 1 cut(s) 983
BstC8I GCNNGC 2 cut(s) 571, 924
BstDEI CTNAG 7 cut(s) 331, 405, 445, 557, 587, 867, 1171
BstF5I GGATG 1 cut(s) 766
BstFNI CGCG 1 cut(s) 1058
BstKTI GATC 2 cut(s) 530, 978
BstMAI GTCTC 1 cut(s) 401
BstMBI GATC 2 cut(s) 527, 975
BstMWI GCNNNNNNNGC 1 cut(s) 932
BstNI CCWGG 1 cut(s) 401
BstSCI CCNGG 1 cut(s) 399
BstSFI CTRYAG 1 cut(s) 16
BstSNI TACGTA 1 cut(s) 983
BstUI CGCG 1 cut(s) 1058
BstV1I GCAGC 1 cut(s) 312
BstV2I GAAGAC 1 cut(s) 350
Bsu15I ATCGAT 1 cut(s) 618
BsuI GTATCC 1 cut(s) 503
BsuRI GGCC 1 cut(s) 631
BsuTUI ATCGAT 1 cut(s) 618
BtsCI GGATG 1 cut(s) 766
BtsI GCAGTG 1 cut(s) 539
BtsIMutI CAGTG 6 cut(s) 343, 539, 654, 654, 737, 952
Cac8I GCNNGC 2 cut(s) 571, 924
Cfr10I RCCGGY 1 cut(s) 922
Cfr13I GGNCC 2 cut(s) 508, 630
ClaI ATCGAT 1 cut(s) 618
CseI GACGC 2 cut(s) 257, 668
Csp6I GTAC 6 cut(s) 221, 554, 584, 723, 1053, 1118
CviAII CATG 2 cut(s) 77, 171
CviQI GTAC 6 cut(s) 221, 554, 584, 723, 1053, 1118
DdeI CTNAG 7 cut(s) 331, 405, 445, 557, 587, 867, 1171
DpnI GATC 2 cut(s) 529, 977
DpnII GATC 2 cut(s) 527, 975
Eco105I TACGTA 1 cut(s) 983
Eco31I GGTCTC 1 cut(s) 401
Eco32I GATATC 2 cut(s) 475, 941
Eco47I GGWCC 1 cut(s) 508
Eco57I CTGAAG 1 cut(s) 834
EcoO109I RGGNCCY 2 cut(s) 508, 630
EcoRII CCWGG 1 cut(s) 399
EcoRV GATATC 2 cut(s) 475, 941
FaeI CATG 2 cut(s) 80, 174
FaqI GGGAC 2 cut(s) 494, 1047
FatI CATG 2 cut(s) 76, 170
Fnu4HI GCNGC 2 cut(s) 326, 418
FokI GGATG 1 cut(s) 773
Fsp4HI GCNGC 2 cut(s) 326, 418
FspBI CTAG 1 cut(s) 488
GluI GCNGC 2 cut(s) 326, 418
HaeIII GGCC 1 cut(s) 631
HapII CCGG 1 cut(s) 923
HgaI GACGC 2 cut(s) 257, 668
Hin1II CATG 2 cut(s) 80, 174
HincII GTYRAC 1 cut(s) 685
HindII GTYRAC 1 cut(s) 685
HindIII AAGCTT 1 cut(s) 260
HinfI GANTC 5 cut(s) 230, 279, 608, 764, 844
HpaII CCGG 1 cut(s) 923
HphI GGTGA 1 cut(s) 64
Hpy166II GTNNAC 5 cut(s) 654, 685, 904, 917, 1099
Hpy188I TCNGA 3 cut(s) 301, 868, 1001
Hpy188III TCNNGA 2 cut(s) 310, 1109
Hpy8I GTNNAC 5 cut(s) 654, 685, 904, 917, 1099
HpyAV CCTTC 4 cut(s) 723, 778, 1009, 1024
HpyCH4III ACNGT 3 cut(s) 151, 430, 741
HpyCH4IV ACGT 2 cut(s) 223, 982
HpyCH4V TGCA 3 cut(s) 28, 1087, 1160
HpyF10VI GCNNNNNNNGC 1 cut(s) 932
HpyF3I CTNAG 7 cut(s) 331, 405, 445, 557, 587, 867, 1171
HpySE526I ACGT 2 cut(s) 223, 982
Hsp92II CATG 2 cut(s) 80, 174
KpnI GGTACC 1 cut(s) 1056
KroI GCCGGC 1 cut(s) 922
KroNI GCCGGC 1 cut(s) 924
Kzo9I GATC 2 cut(s) 527, 975
Lsp1109I GCAGC 1 cut(s) 312
LweI GCATC 1 cut(s) 1143
MaeI CTAG 1 cut(s) 488
MaeII ACGT 2 cut(s) 223, 982
MaeIII GTNAC 2 cut(s) 70, 591
MalI GATC 2 cut(s) 529, 977
MboI GATC 2 cut(s) 527, 975
MboII GAAGA 4 cut(s) 33, 355, 827, 883
MmeI TCCRAC 1 cut(s) 788
MnlI CCTC 7 cut(s) 102, 204, 522, 582, 720, 774, 1174
MroNI GCCGGC 1 cut(s) 922
MseI TTAA 6 cut(s) 258, 522, 543, 672, 1022, 1061
MslI CAYNNNNRTG 2 cut(s) 698, 854
MspI CCGG 1 cut(s) 923
MspR9I CCNGG 1 cut(s) 401
Mva1269I GAATGC 1 cut(s) 393
MvaI CCWGG 1 cut(s) 401
MvnI CGCG 1 cut(s) 1058
MwoI GCNNNNNNNGC 1 cut(s) 932
NaeI GCCGGC 1 cut(s) 924
NdeII GATC 2 cut(s) 527, 975
NgoMIV GCCGGC 1 cut(s) 922
NlaIII CATG 2 cut(s) 80, 174
NlaIV GGNNCC 5 cut(s) 90, 376, 510, 632, 1054
NmuCI GTSAC 2 cut(s) 70, 591
PctI GAATGC 1 cut(s) 393
PdiI GCCGGC 1 cut(s) 924
PfeI GAWTC 5 cut(s) 230, 279, 608, 764, 844
PkrI GCNGC 2 cut(s) 327, 419
Ppu21I YACGTR 1 cut(s) 983
PpuMI RGGWCCY 1 cut(s) 508
PsiI TTATAA 1 cut(s) 164
Psp5II RGGWCCY 1 cut(s) 508
Psp6I CCWGG 1 cut(s) 399
PspGI CCWGG 1 cut(s) 399
PspN4I GGNNCC 5 cut(s) 90, 376, 510, 632, 1054
PspPI GGNCC 2 cut(s) 508, 630
PspPPI RGGWCCY 1 cut(s) 508
RsaI GTAC 6 cut(s) 222, 555, 585, 724, 1054, 1119
RsaNI GTAC 6 cut(s) 221, 554, 584, 723, 1053, 1118
RseI CAYNNNNRTG 2 cut(s) 698, 854
SaqAI TTAA 6 cut(s) 258, 522, 543, 672, 1022, 1061
SatI GCNGC 2 cut(s) 326, 418
Sau3AI GATC 2 cut(s) 527, 975
Sau96I GGNCC 2 cut(s) 508, 630
ScaI AGTACT 2 cut(s) 555, 585
ScrFI CCNGG 1 cut(s) 401
SfaNI GCATC 1 cut(s) 1143
SfcI CTRYAG 1 cut(s) 16
SinI GGWCC 1 cut(s) 508
SmiMI CAYNNNNRTG 2 cut(s) 698, 854
SnaBI TACGTA 1 cut(s) 983
SsiI CCGC 2 cut(s) 417, 1056
SspMI CTAG 1 cut(s) 488
StyD4I CCNGG 1 cut(s) 399
TaaI ACNGT 3 cut(s) 151, 430, 741
TaiI ACGT 2 cut(s) 226, 985
TaqI TCGA 1 cut(s) 618
TatI WGTACW 3 cut(s) 553, 583, 722
TauI GCSGC 1 cut(s) 420
TfiI GAWTC 5 cut(s) 230, 279, 608, 764, 844
Tru1I TTAA 6 cut(s) 258, 522, 543, 672, 1022, 1061
Tru9I TTAA 6 cut(s) 258, 522, 543, 672, 1022, 1061
TscAI CASTG 6 cut(s) 343, 539, 654, 661, 744, 952
TseFI GTSAC 2 cut(s) 70, 591
TseI GCWGC 1 cut(s) 325
Tsp45I GTSAC 2 cut(s) 70, 591
TspDTI ATGAA 7 cut(s) 102, 144, 159, 508, 690, 746, 777
TspGWI ACGGA 1 cut(s) 1042
TspRI CASTG 6 cut(s) 343, 539, 654, 661, 744, 952
VpaK11BI GGWCC 1 cut(s) 508
XapI RAATTY 2 cut(s) 166, 874
XspI CTAG 1 cut(s) 488
ZrmI AGTACT 2 cut(s) 555, 585
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.