Rw2G035800
ERF Family

mTERF

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0000263
Physical Location & Seq
Forward (+)
58869484 .. 58870686
1203 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G035800.1

Sequence Viewer

Length: 1203 bp
ATGTTTGGTTTTTGCTGTAAAAGATTGCAATTACTAGTTCCAAGCTGTAGGATTGCCGTTGATTATTCAGTCACCCATCTTCAAAAGGCACCACCTTTTACAAGATTATATTCATCAAAACCATTATTAGGGGTCCAAGATGATAAAGCTCGCTCTTTTACAGTTTCATACCTTATAAACTCATTTGGGTTCTCCCCACAAGTGGCTCTCTCTGCATCCAACAAGATGAAGGTACGCTTCGACACCCCAGAAAAACCCGACTCTGTTATTAAGCTTTTTAAAGACTATGGACTCAGTGATGCCCACATCTCTGACATTGTTAAGAAATGCCCAGTTTTGCTTGTATCCAATGCTGAAAAGACCCTTTGGCCAAAACTCCAGTTTTTCACTTCCATTGGCCTTTCGGGCAATGACCTTGCCCGGATCTTCCGTGTCAACGCAAATATCTTGACATTGAGCTTAGAGAGAAGTATTAGACCTTGTCATGATATTATGAAAACTCTAGAAATACCTGAGCATAAGGTCCCTTATTTCATTAGCAACTATTATATGTTTAACCCCAAAGTATTGAGCAATGTACCTCACAACACTTTGATTCTGAGAGCGCATCAGGTGCCAGAAGCGTCATTTCCTCTGTGGGTGTGTTCTCATTTGCTTGCACTGTCATTTGACTCTGAGAAGGTTAAGACAAATGTCGAGAAGGTCATCAGCATGGGATTTGACCCTTCGTCTACTACATTCATGAAAGCTTTGTATGTGGTATCGGTGACCAATGCAGCAAAGTGGAAACACAAGATGGAATTTTATGAGAAGTGGGGTTGGACTGAAGATGATGTGTTGTTGGCATTTAGAAAGAATCCCATGTTTATGAGCTTCAGTGTGAAGAATATTTCAGCTAAAATGGATTTTCTTTTGAATAAAATGGGTTGCCAGCCTGCAGATCTGGCTGCACGTCCAGATATTCTGACTTATAGTTTGGAGAAGCGAATCATACCTAGGTGTTCAGTCATCAGATTTCTCCAGTTAAAGGGCTTAATTGTCAAGGAAGATTTATATATAATTAGCATTGTGCACAAAAACGAGAAGTGGTTCTTGGAAAGGTTTGTGATCAAATATGAAGAACAAGCACCTGAATTGCAGAGCATCTTACAGGGGAAAATGGGTCTAGCCGAATTTGGTTTAGGATTCGACGAAAGTGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
mTERF

Protein Analysis

400

Amino Acids

45.69

Weight (kDa)

9.18

Isoelectric Point (pI)

47.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
mTERF PF02536 85 - 182 2.5e-11 mTERF
mTERF PF02536 221 - 364 5.8e-16 mTERF
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000263)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G21150 AT1G21150 AT1G21150
fragaria_vesca FvH4_4g17900 FvH4_6g26110 FvH4_6g33880 FvH4_6g33900 FvH4_6g34011 FvH4_6g34011 FvH4_6g34011 FvH4_6g34011 FvH4_6g34030 FvH4_6g34040 FvH4_6g34070 FvH4_6g34070 FvH4_7g12830
malus_domestica MD09G1189800.v1.1 MD09G1189900.v1.1 MD09G1190000.v1.1 MD14G1088800.v1.1 MD14G1088900.v1.1 MD17G1172900.v1.1
pyrus_communis pycom07g03460 pycom09g10650 pycom14g07860
rosa_chinensis RchiOBHm_Chr1g0351891 RchiOBHm_Chr1g0351901 RchiOBHm_Chr2g0143771 RchiOBHm_Chr2g0143861 RchiOBHm_Chr2g0143881 RchiOBHm_Chr2g0143941 RchiOBHm_Chr2g0143951 RchiOBHm_Chr2g0144081 RchiOBHm_Chr2g0144091 RchiOBHm_Chr2g0144211 RchiOBHm_Chr2g0144231 RchiOBHm_Chr2g0144241 RchiOBHm_Chr2g0144291 RchiOBHm_Chr2g0144301 RchiOBHm_Chr2g0144311 RchiOBHm_Chr2g0144331 RchiOBHm_Chr2g0144341 RchiOBHm_Chr4g0422021 RchiOBHm_Chr4g0422031
rosa_laevigata RLG00000007639 RLG00000020063 RLG00000020071 RLG00000020072 RLG00000020074
rosa_multiflora Rmu_co8214640.1_g000001 Rmu_co8471033.1_g000001 Rmu_sc0000789.1_g000002 Rmu_sc0001321.1_g000001 Rmu_sc0004340.1_g000001 Rmu_sc0004897.1_g000001 Rmu_sc0007105.1_g000005 Rmu_sc0009498.1_g000001 Rmu_sc0009498.1_g000002 Rmu_sc0019136.1_g000001 Rmu_sc0020327.1_g000002 Rmu_sc0020327.1_g000003 Rmu_sc0022905.1_g000001 Rmu_sc0032602.1_g000003 Rmu_sc0032602.1_g000004
rosa_roxburghii Rroxscaffold_2G00101380 Rroxscaffold_2G00101390 Rroxscaffold_2G00101400 Rroxscaffold_2G00101410 Rroxscaffold_2G00101480 Rroxscaffold_2G00101490 Rroxscaffold_4G00303470 Rroxscaffold_5G00364130 Rroxscaffold_5G00364150
rosa_rugosa Rorug01G0222600 Rorug02G0384700 Rorug02G0384800 Rorug02G0385800 Rorug02G0385900 Rorug02G0386000 Rorug02G0386000 Rorug02G0386100 Rorug04G0176700 Rorug04G0176800.1
rosa_samantha Rh1AG236500 Rh1AG236600 Rh1BG206900 Rh1CG221000 Rh1CG221100 Rh2BG444800 Rh2BG444900 Rh2BG446600 Rh2BG446700 Rh2BG447600 Rh2BG448100 Rh2BG448400 Rh2BG448500 Rh2BG448700 Rh2BG448800 Rh2CG423500 Rh2CG423600 Rh2CG424800 Rh2CG424900 Rh2CG425100 Rh2CG425200 Rh2DG455200 Rh2DG455300 Rh2DG456900 Rh2DG457000 Rh2DG457100 Rh2DG457600 Rh2DG457900 Rh2DG458000 Rh2DG458300 Rh2DG458400 Rh4AG236100 Rh4AG236200 Rh4BG239200 Rh4CG250900 Rh4CG251100
rosa_wichuraiana Rw0G000400 Rw0G015990 Rw0G017200 Rw1G020580 Rw2G033310 Rw2G035630 Rw2G035640 Rw2G035790 Rw2G035800 Rw2G035840 Rw2G036160 Rw4G019830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 176
AccB1I GGYRCC 2 cut(s) 88, 613
AccI GTMKAC 1 cut(s) 731
AclWI GGATC 1 cut(s) 431
AcoI YGGCCR 1 cut(s) 368
AcsI RAATTY 2 cut(s) 800, 1172
AcuI CTGAAG 2 cut(s) 846, 859
AfaI GTAC 2 cut(s) 234, 579
AfiI CCNNNNNNNGG 3 cut(s) 128, 202, 1027
AgsI TTSAA 2 cut(s) 83, 916
AhdI GACNNNNNGTC 1 cut(s) 727
AhlI ACTAGT 1 cut(s) 34
AjiI CACGTC 1 cut(s) 953
AjuI GAANNNNNNNTTGG 2 cut(s) 1076, 1108
AluBI AGCT 7 cut(s) 45, 149, 274, 459, 749, 873, 896
AluI AGCT 7 cut(s) 45, 149, 274, 459, 749, 873, 896
Alw21I GWGCWC 1 cut(s) 1074
Alw44I GTGCAC 1 cut(s) 1070
AlwI GGATC 1 cut(s) 431
AoxI GGCC 2 cut(s) 368, 397
ApaLI GTGCAC 1 cut(s) 1070
ApeKI GCWGC 2 cut(s) 776, 947
ApoI RAATTY 2 cut(s) 800, 1172
ArsI GACNNNNNNTTYG 2 cut(s) 958, 990
Asp700I GAANNNNTTC 1 cut(s) 1088
AspA2I CCTAGG 1 cut(s) 995
AspLEI GCGC 1 cut(s) 607
AspS9I GGNCC 2 cut(s) 133, 523
AsuC2I CCSGG 1 cut(s) 421
AsuHPI GGTGA 2 cut(s) 64, 778
AvaII GGWCC 2 cut(s) 133, 523
AvrII CCTAGG 1 cut(s) 995
BaeGI GKGCMC 1 cut(s) 1074
BalI TGGCCA 1 cut(s) 370
BanI GGYRCC 2 cut(s) 88, 613
Bbv12I GWGCWC 1 cut(s) 1074
BbvI GCAGC 2 cut(s) 788, 934
BccI CCATC 2 cut(s) 84, 790
BceAI ACGGC 1 cut(s) 41
BciVI GTATCC 1 cut(s) 355
BclI TGATCA 1 cut(s) 1107
BcnI CCSGG 1 cut(s) 421
BcuI ACTAGT 1 cut(s) 34
BfaI CTAG 4 cut(s) 35, 503, 996, 1166
BfmI CTRYAG 2 cut(s) 46, 936
BfuI GTATCC 1 cut(s) 355
BglI GCCNNNNNGGC 1 cut(s) 405
BglII AGATCT 1 cut(s) 940
BisI GCNGC 2 cut(s) 777, 948
BlnI CCTAGG 1 cut(s) 995
BlsI GCNGC 2 cut(s) 778, 949
Bme1390I CCNGG 1 cut(s) 421
Bme18I GGWCC 2 cut(s) 133, 523
BmeRI GACNNNNNGTC 1 cut(s) 727
BmgBI CACGTC 1 cut(s) 953
BmgT120I GGNCC 2 cut(s) 133, 523
BmiI GGNNCC 4 cut(s) 90, 134, 525, 615
BmrFI CCNGG 1 cut(s) 421
BmrI ACTGGG 1 cut(s) 326
BmsI GCATC 4 cut(s) 224, 289, 616, 1152
BmuI ACTGGG 1 cut(s) 326
BoxI GACNNNNGTC 1 cut(s) 692
BpmI CTGGAG 2 cut(s) 362, 1004
Bpu10I CCTNAGC 1 cut(s) 513
BpuMI CCSGG 1 cut(s) 421
BsaJI CCNNGG 1 cut(s) 995
Bsc4I CCNNNNNNNGG 3 cut(s) 128, 202, 1027
Bse1I ACTGG 3 cut(s) 332, 379, 1021
Bse3DI GCAATG 2 cut(s) 415, 580
BseDI CCNNGG 1 cut(s) 995
BseGI GGATG 1 cut(s) 215
BseLI CCNNNNNNNGG 3 cut(s) 128, 202, 1027
BseMI GCAATG 2 cut(s) 415, 580
BseMII CTCAG 4 cut(s) 307, 504, 590, 666
BseNI ACTGG 3 cut(s) 332, 379, 1021
BseSI GKGCMC 1 cut(s) 1074
BseXI GCAGC 2 cut(s) 788, 934
BsgI GTGCAG 1 cut(s) 933
BshFI GGCC 2 cut(s) 370, 399
BshNI GGYRCC 2 cut(s) 88, 613
BsiHKAI GWGCWC 1 cut(s) 1074
BsiSI CCGG 1 cut(s) 421
BslFI GGGAC 1 cut(s) 509
BslI CCNNNNNNNGG 3 cut(s) 128, 202, 1027
BsmFI GGGAC 1 cut(s) 509
BsnI GGCC 2 cut(s) 370, 399
Bsp1286I GDGCHC 1 cut(s) 1074
Bsp143I GATC 3 cut(s) 423, 940, 1107
BspANI GGCC 2 cut(s) 370, 399
BspCNI CTCAG 4 cut(s) 306, 505, 591, 667
BspHI TCATGA 2 cut(s) 484, 741
BspLI GGNNCC 4 cut(s) 90, 134, 525, 615
BspMAI CTGCAG 1 cut(s) 940
BspPI GGATC 1 cut(s) 431
BspT107I GGYRCC 2 cut(s) 88, 613
BsrDI GCAATG 2 cut(s) 415, 580
BsrI ACTGG 3 cut(s) 332, 379, 1021
BssECI CCNNGG 1 cut(s) 995
BssMI GATC 3 cut(s) 423, 940, 1107
BssT1I CCWWGG 1 cut(s) 995
Bst4CI ACNGT 2 cut(s) 163, 663
BstAPI GCANNNNNTGC 1 cut(s) 613
BstC8I GCNNGC 4 cut(s) 151, 657, 932, 936
BstDEI CTNAG 5 cut(s) 293, 460, 513, 599, 675
BstEII GGTNACC 1 cut(s) 766
BstF5I GGATG 1 cut(s) 215
BstHHI GCGC 1 cut(s) 607
BstKTI GATC 3 cut(s) 426, 943, 1110
BstMBI GATC 3 cut(s) 423, 940, 1107
BstMWI GCNNNNNNNGC 4 cut(s) 212, 405, 613, 944
BstPAI GACNNNNGTC 1 cut(s) 692
BstPI GGTNACC 1 cut(s) 766
BstSCI CCNGG 1 cut(s) 419
BstSFI CTRYAG 2 cut(s) 46, 936
BstSLI GKGCMC 1 cut(s) 1074
BstV1I GCAGC 2 cut(s) 788, 934
BstX2I RGATCY 2 cut(s) 423, 940
BstYI RGATCY 2 cut(s) 423, 940
BsuI GTATCC 1 cut(s) 355
BsuRI GGCC 2 cut(s) 370, 399
BtrI CACGTC 1 cut(s) 953
BtsCI GGATG 1 cut(s) 215
BtsIMutI CAGTG 3 cut(s) 301, 659, 883
Cac8I GCNNGC 4 cut(s) 151, 657, 932, 936
CciI TCATGA 2 cut(s) 484, 741
CfoI GCGC 1 cut(s) 607
Cfr13I GGNCC 2 cut(s) 133, 523
CseI GACGC 1 cut(s) 612
Csp6I GTAC 2 cut(s) 233, 578
CviAII CATG 4 cut(s) 485, 712, 742, 862
CviQI GTAC 2 cut(s) 233, 578
DdeI CTNAG 5 cut(s) 293, 460, 513, 599, 675
DpnI GATC 3 cut(s) 425, 942, 1109
DpnII GATC 3 cut(s) 423, 940, 1107
DraI TTTAAA 1 cut(s) 280
DriI GACNNNNNGTC 1 cut(s) 727
EaeI YGGCCR 1 cut(s) 368
Eam1105I GACNNNNNGTC 1 cut(s) 727
Eco130I CCWWGG 1 cut(s) 995
Eco47I GGWCC 2 cut(s) 133, 523
Eco57I CTGAAG 2 cut(s) 846, 859
Eco91I GGTNACC 1 cut(s) 766
EcoO109I RGGNCCY 1 cut(s) 523
EcoO65I GGTNACC 1 cut(s) 766
EcoT14I CCWWGG 1 cut(s) 995
ErhI CCWWGG 1 cut(s) 995
FaeI CATG 4 cut(s) 488, 715, 745, 865
FalI AAGNNNNNCTT 4 cut(s) 221, 253, 1076, 1108
FaqI GGGAC 1 cut(s) 509
FatI CATG 4 cut(s) 484, 711, 741, 861
FbaI TGATCA 1 cut(s) 1107
FblI GTMKAC 1 cut(s) 731
Fnu4HI GCNGC 2 cut(s) 777, 948
FokI GGATG 1 cut(s) 202
Fsp4HI GCNGC 2 cut(s) 777, 948
FspBI CTAG 4 cut(s) 35, 503, 996, 1166
GlaI GCGC 1 cut(s) 606
GluI GCNGC 2 cut(s) 777, 948
GsuI CTGGAG 2 cut(s) 362, 1004
HaeIII GGCC 2 cut(s) 370, 399
HapII CCGG 1 cut(s) 421
HgaI GACGC 1 cut(s) 612
HhaI GCGC 1 cut(s) 607
Hin1II CATG 4 cut(s) 488, 715, 745, 865
Hin6I GCGC 1 cut(s) 605
HinP1I GCGC 1 cut(s) 605
HincII GTYRAC 1 cut(s) 436
HindII GTYRAC 1 cut(s) 436
HindIII AAGCTT 2 cut(s) 272, 747
HinfI GANTC 7 cut(s) 260, 291, 595, 671, 856, 987, 1185
HpaII CCGG 1 cut(s) 421
HphI GGTGA 2 cut(s) 64, 778
Hpy166II GTNNAC 3 cut(s) 436, 732, 1072
Hpy188I TCNGA 5 cut(s) 313, 600, 676, 966, 1013
Hpy188III TCNNGA 6 cut(s) 448, 485, 503, 697, 742, 956
Hpy8I GTNNAC 3 cut(s) 436, 732, 1072
Hpy99I CGWCG 1 cut(s) 1193
HpyAV CCTTC 4 cut(s) 223, 673, 694, 735
HpyCH4III ACNGT 2 cut(s) 163, 663
HpyCH4IV ACGT 1 cut(s) 952
HpyCH4V TGCA 8 cut(s) 28, 215, 659, 776, 938, 950, 1072, 1138
HpyF10VI GCNNNNNNNGC 4 cut(s) 212, 405, 613, 944
HpyF3I CTNAG 5 cut(s) 293, 460, 513, 599, 675
HpySE526I ACGT 1 cut(s) 952
Hsp92II CATG 4 cut(s) 488, 715, 745, 865
HspAI GCGC 1 cut(s) 605
Ksp22I TGATCA 1 cut(s) 1107
Kzo9I GATC 3 cut(s) 423, 940, 1107
Lsp1109I GCAGC 2 cut(s) 788, 934
LweI GCATC 4 cut(s) 224, 289, 616, 1152
MaeI CTAG 4 cut(s) 35, 503, 996, 1166
MaeII ACGT 1 cut(s) 952
MaeIII GTNAC 2 cut(s) 70, 766
MalI GATC 3 cut(s) 425, 942, 1109
MboI GATC 3 cut(s) 423, 940, 1107
MboII GAAGA 6 cut(s) 71, 418, 839, 895, 1058, 1130
MflI RGATCY 2 cut(s) 423, 940
MhlI GDGCHC 1 cut(s) 1074
MlsI TGGCCA 1 cut(s) 370
MluCI AATT 6 cut(s) 29, 800, 1035, 1059, 1133, 1172
MluNI TGGCCA 1 cut(s) 370
MlyI GAGTC 3 cut(s) 254, 285, 665
MmeI TCCRAC 2 cut(s) 243, 800
MnlI CCTC 2 cut(s) 591, 642
Mox20I TGGCCA 1 cut(s) 370
MroXI GAANNNNTTC 1 cut(s) 1088
MscI TGGCCA 1 cut(s) 370
MseI TTAA 7 cut(s) 270, 279, 321, 555, 684, 1025, 1034
MslI CAYNNNNRTG 2 cut(s) 710, 866
Msp20I TGGCCA 1 cut(s) 370
MspI CCGG 1 cut(s) 421
MspR9I CCNGG 1 cut(s) 421
MwoI GCNNNNNNNGC 4 cut(s) 212, 405, 613, 944
NciI CCSGG 1 cut(s) 421
NdeII GATC 3 cut(s) 423, 940, 1107
NlaIII CATG 4 cut(s) 488, 715, 745, 865
NlaIV GGNNCC 4 cut(s) 90, 134, 525, 615
NmuCI GTSAC 2 cut(s) 70, 766
PagI TCATGA 2 cut(s) 484, 741
PdmI GAANNNNTTC 1 cut(s) 1088
PfeI GAWTC 4 cut(s) 595, 856, 987, 1185
PflFI GACNNNGTC 1 cut(s) 480
PkrI GCNGC 2 cut(s) 778, 949
PleI GAGTC 3 cut(s) 254, 285, 665
PpsI GAGTC 3 cut(s) 254, 285, 665
PpuMI RGGWCCY 1 cut(s) 523
PshAI GACNNNNGTC 1 cut(s) 692
PsiI TTATAA 1 cut(s) 176
Psp5II RGGWCCY 1 cut(s) 523
PspEI GGTNACC 1 cut(s) 766
PspN4I GGNNCC 4 cut(s) 90, 134, 525, 615
PspPI GGNCC 2 cut(s) 133, 523
PspPPI RGGWCCY 1 cut(s) 523
PstI CTGCAG 1 cut(s) 940
PsuI RGATCY 2 cut(s) 423, 940
PsyI GACNNNGTC 1 cut(s) 480
RsaI GTAC 2 cut(s) 234, 579
RsaNI GTAC 2 cut(s) 233, 578
RseI CAYNNNNRTG 2 cut(s) 710, 866
SaqAI TTAA 7 cut(s) 270, 279, 321, 555, 684, 1025, 1034
SatI GCNGC 2 cut(s) 777, 948
Sau3AI GATC 3 cut(s) 423, 940, 1107
Sau96I GGNCC 2 cut(s) 133, 523
SchI GAGTC 3 cut(s) 254, 285, 665
ScrFI CCNGG 1 cut(s) 421
SduI GDGCHC 1 cut(s) 1074
SfaNI GCATC 4 cut(s) 224, 289, 616, 1152
SfcI CTRYAG 2 cut(s) 46, 936
SinI GGWCC 2 cut(s) 133, 523
SmiMI CAYNNNNRTG 2 cut(s) 710, 866
SpeI ACTAGT 1 cut(s) 34
Sse9I AATT 6 cut(s) 29, 800, 1035, 1059, 1133, 1172
SspI AATATT 1 cut(s) 889
SspMI CTAG 4 cut(s) 35, 503, 996, 1166
StyD4I CCNGG 1 cut(s) 419
StyI CCWWGG 1 cut(s) 995
TaaI ACNGT 2 cut(s) 163, 663
TaiI ACGT 1 cut(s) 955
TaqI TCGA 3 cut(s) 240, 696, 1188
TasI AATT 6 cut(s) 29, 800, 1035, 1059, 1133, 1172
TfiI GAWTC 4 cut(s) 595, 856, 987, 1185
Tru1I TTAA 7 cut(s) 270, 279, 321, 555, 684, 1025, 1034
Tru9I TTAA 7 cut(s) 270, 279, 321, 555, 684, 1025, 1034
TscAI CASTG 3 cut(s) 301, 666, 883
TseFI GTSAC 2 cut(s) 70, 766
TseI GCWGC 2 cut(s) 776, 947
Tsp45I GTSAC 2 cut(s) 70, 766
TspDTI ATGAA 8 cut(s) 102, 156, 242, 509, 523, 730, 758, 1131
TspGWI ACGGA 1 cut(s) 419
TspRI CASTG 3 cut(s) 301, 666, 883
Tth111I GACNNNGTC 1 cut(s) 480
VneI GTGCAC 1 cut(s) 1070
VpaK11BI GGWCC 2 cut(s) 133, 523
XapI RAATTY 2 cut(s) 800, 1172
XbaI TCTAGA 1 cut(s) 502
XmaJI CCTAGG 1 cut(s) 995
XmiI GTMKAC 1 cut(s) 731
XmnI GAANNNNTTC 1 cut(s) 1088
XspI CTAG 4 cut(s) 35, 503, 996, 1166
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.