Rroxscaffold_2G00101410
ERF Family

mTERF

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000263
Physical Location & Seq
Reverse (-)
23368771 .. 23371547
2777 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00101410.1

Sequence Viewer

Length: 921 bp
ATGGACTCGATGGTACCCATGTCTCTGAAATCGCTAAGAAACGCCCCACACCTGTTTTTATTCAATGCTGAGAAGACCCTTTTGCCCAAACTCGAGTTTTTTTGTTCTATTGGCATTTCAGGCACTGTCCTTGCTAGGCTCCTTTGTAACAACCCAAGAATCTTGGCATTAAGCTTAGAGAGAAGTCTCAGACCTTGTTATGATCTCACCAAAACTCTACGTATCCCCGACGAAAAGCTCCGTTATTTCTTTGGTGACTTCAGGCGGAATAGTTTGGAAAGACTCTGCATTGTTGCTCGAAATATTCCGGTGCTGATAGCACATGATGTGCCACAATCCTCATTTCCTCTGTGGGTGCCCTTTTATTTTACTTCACTATCCTTTGACTCTGAGAAGGTCAAGACAAATGTTCACAAGGTCATTAGCATGGGATTCGACCCTTCATCTGCCACATTCATGAAAGCACTGTATGTGATATCAGGGATGGATACATCGAAATGGGAACAGAAGATGGAATTTTATAGCAAGTGGGGTTGGACTGAAGATGATGTGTTGTTGGCATTTAGAAGGAGTCCCTTGTTTATGTCTTTCAGTGAGAAGATTATATCCAGTAAAATGGATTTTTATGTGAATACAATGGGTTGCAAGCCCTCAGATGTGGCTGGATGTCCAGATGTTCTAACGTATAGTTTGGAGAAGCGAATCATACCCAGGTGTTCAGTTATCAGACTTCTCCAGTTAGAGGGCTTAATTGCAAAGGAAGATGTATCTATAATTACCATTCTGCAGAAAAGTGAGAAGTGGTTCTTGGAAAGGTTTGTGATCAAATATCAAGAGCAAGTACCAGAATTGCTGACATCGTACAAGGAAAAAATCAGTCTTGCAAAGTTTGGCTTAGGATTTGATGAAGAGGTGGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
mTERF

Protein Analysis

306

Amino Acids

35.32

Weight (kDa)

8.57

Isoelectric Point (pI)

51.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
mTERF PF02536 12 - 75 2.2e-06 mTERF
mTERF PF02536 126 - 269 2.4e-19 mTERF
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000263)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G21150 AT1G21150 AT1G21150
fragaria_vesca FvH4_4g17900 FvH4_6g26110 FvH4_6g33880 FvH4_6g33900 FvH4_6g34011 FvH4_6g34011 FvH4_6g34011 FvH4_6g34011 FvH4_6g34030 FvH4_6g34040 FvH4_6g34070 FvH4_6g34070 FvH4_7g12830
malus_domestica MD09G1189800.v1.1 MD09G1189900.v1.1 MD09G1190000.v1.1 MD14G1088800.v1.1 MD14G1088900.v1.1 MD17G1172900.v1.1
pyrus_communis pycom07g03460 pycom09g10650 pycom14g07860
rosa_chinensis RchiOBHm_Chr1g0351891 RchiOBHm_Chr1g0351901 RchiOBHm_Chr2g0143771 RchiOBHm_Chr2g0143861 RchiOBHm_Chr2g0143881 RchiOBHm_Chr2g0143941 RchiOBHm_Chr2g0143951 RchiOBHm_Chr2g0144081 RchiOBHm_Chr2g0144091 RchiOBHm_Chr2g0144211 RchiOBHm_Chr2g0144231 RchiOBHm_Chr2g0144241 RchiOBHm_Chr2g0144291 RchiOBHm_Chr2g0144301 RchiOBHm_Chr2g0144311 RchiOBHm_Chr2g0144331 RchiOBHm_Chr2g0144341 RchiOBHm_Chr4g0422021 RchiOBHm_Chr4g0422031
rosa_laevigata RLG00000007639 RLG00000020063 RLG00000020071 RLG00000020072 RLG00000020074
rosa_multiflora Rmu_co8214640.1_g000001 Rmu_co8471033.1_g000001 Rmu_sc0000789.1_g000002 Rmu_sc0001321.1_g000001 Rmu_sc0004340.1_g000001 Rmu_sc0004897.1_g000001 Rmu_sc0007105.1_g000005 Rmu_sc0009498.1_g000001 Rmu_sc0009498.1_g000002 Rmu_sc0019136.1_g000001 Rmu_sc0020327.1_g000002 Rmu_sc0020327.1_g000003 Rmu_sc0022905.1_g000001 Rmu_sc0032602.1_g000003 Rmu_sc0032602.1_g000004
rosa_roxburghii Rroxscaffold_2G00101380 Rroxscaffold_2G00101390 Rroxscaffold_2G00101400 Rroxscaffold_2G00101410 Rroxscaffold_2G00101480 Rroxscaffold_2G00101490 Rroxscaffold_4G00303470 Rroxscaffold_5G00364130 Rroxscaffold_5G00364150
rosa_rugosa Rorug01G0222600 Rorug02G0384700 Rorug02G0384800 Rorug02G0385800 Rorug02G0385900 Rorug02G0386000 Rorug02G0386000 Rorug02G0386100 Rorug04G0176700 Rorug04G0176800.1
rosa_samantha Rh1AG236500 Rh1AG236600 Rh1BG206900 Rh1CG221000 Rh1CG221100 Rh2BG444800 Rh2BG444900 Rh2BG446600 Rh2BG446700 Rh2BG447600 Rh2BG448100 Rh2BG448400 Rh2BG448500 Rh2BG448700 Rh2BG448800 Rh2CG423500 Rh2CG423600 Rh2CG424800 Rh2CG424900 Rh2CG425100 Rh2CG425200 Rh2DG455200 Rh2DG455300 Rh2DG456900 Rh2DG457000 Rh2DG457100 Rh2DG457600 Rh2DG457900 Rh2DG458000 Rh2DG458300 Rh2DG458400 Rh4AG236100 Rh4AG236200 Rh4BG239200 Rh4CG250900 Rh4CG251100
rosa_wichuraiana Rw0G000400 Rw0G015990 Rw0G017200 Rw1G020580 Rw2G033310 Rw2G035630 Rw2G035640 Rw2G035790 Rw2G035800 Rw2G035840 Rw2G036160 Rw4G019830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 13
AccB1I GGYRCC 2 cut(s) 13, 355
AciI CCGC 1 cut(s) 265
AcsI RAATTY 1 cut(s) 515
AcuI CTGAAG 2 cut(s) 244, 561
AfaI GTAC 3 cut(s) 15, 843, 863
AfiI CCNNNNNNNGG 1 cut(s) 742
AgsI TTSAA 1 cut(s) 64
AjnI CCWGG 1 cut(s) 710
AjuI GAANNNNNNNTTGG 2 cut(s) 791, 823
AluBI AGCT 2 cut(s) 174, 238
AluI AGCT 2 cut(s) 174, 238
Alw26I GTCTC 2 cut(s) 27, 191
AlwNI CAGNNNCTG 1 cut(s) 125
Ama87I CYCGRG 1 cut(s) 92
ApoI RAATTY 1 cut(s) 515
Asp700I GAANNNNTTC 1 cut(s) 803
Asp718I GGTACC 1 cut(s) 13
AsuHPI GGTGA 2 cut(s) 199, 266
AvaI CYCGRG 1 cut(s) 92
BaeGI GKGCMC 1 cut(s) 360
BaeI ACNNNNGTAYC 1 cut(s) 38
BanI GGYRCC 2 cut(s) 13, 355
BbsI GAAGAC 1 cut(s) 80
BccI CCATC 3 cut(s) 4, 478, 505
BcgI CGANNNNNNTGC 2 cut(s) 415, 449
BciT130I CCWGG 1 cut(s) 712
BciVI GTATCC 2 cut(s) 233, 481
BclI TGATCA 1 cut(s) 822
BcoDI GTCTC 2 cut(s) 27, 191
BfaI CTAG 1 cut(s) 135
BfmI CTRYAG 1 cut(s) 785
BfuI GTATCC 2 cut(s) 233, 481
Bme1390I CCNGG 1 cut(s) 712
BmeT110I CYCGRG 1 cut(s) 92
BmiI GGNNCC 3 cut(s) 15, 140, 357
BmrFI CCNGG 1 cut(s) 712
BpiI GAAGAC 1 cut(s) 80
BpmI CTGGAG 1 cut(s) 719
Bpu10I CCTNAGC 1 cut(s) 895
BsaAI YACGTR 1 cut(s) 221
BsaJI CCNNGG 1 cut(s) 710
BsaWI WCCGGW 1 cut(s) 307
Bsc4I CCNNNNNNNGG 1 cut(s) 742
Bse1I ACTGG 2 cut(s) 609, 736
BseBI CCWGG 1 cut(s) 712
BseDI CCNNGG 1 cut(s) 710
BseGI GGATG 2 cut(s) 489, 671
BseLI CCNNNNNNNGG 1 cut(s) 742
BseMII CTCAG 4 cut(s) 60, 202, 381, 666
BseNI ACTGG 2 cut(s) 609, 736
BseSI GKGCMC 1 cut(s) 360
BshNI GGYRCC 2 cut(s) 13, 355
BsiHKCI CYCGRG 1 cut(s) 92
BsiSI CCGG 1 cut(s) 308
BslFI GGGAC 1 cut(s) 558
BslI CCNNNNNNNGG 1 cut(s) 742
BsmAI GTCTC 2 cut(s) 27, 191
BsmFI GGGAC 1 cut(s) 558
BsoBI CYCGRG 1 cut(s) 92
Bsp1286I GDGCHC 1 cut(s) 360
Bsp143I GATC 2 cut(s) 202, 822
BspACI CCGC 1 cut(s) 265
BspCNI CTCAG 4 cut(s) 61, 201, 382, 665
BspHI TCATGA 1 cut(s) 456
BspLI GGNNCC 3 cut(s) 15, 140, 357
BspMAI CTGCAG 1 cut(s) 789
BspT107I GGYRCC 2 cut(s) 13, 355
BsrI ACTGG 2 cut(s) 609, 736
BssECI CCNNGG 1 cut(s) 710
BssMI GATC 2 cut(s) 202, 822
Bst2UI CCWGG 1 cut(s) 712
Bst4CI ACNGT 2 cut(s) 127, 468
Bst6I CTCTTC 1 cut(s) 903
BstBAI YACGTR 1 cut(s) 221
BstC8I GCNNGC 1 cut(s) 647
BstDEI CTNAG 7 cut(s) 35, 69, 175, 188, 390, 652, 895
BstF5I GGATG 2 cut(s) 489, 671
BstKTI GATC 2 cut(s) 205, 825
BstMAI GTCTC 2 cut(s) 27, 191
BstMBI GATC 2 cut(s) 202, 822
BstMWI GCNNNNNNNGC 1 cut(s) 120
BstNI CCWGG 1 cut(s) 712
BstSCI CCNGG 1 cut(s) 710
BstSFI CTRYAG 1 cut(s) 785
BstSLI GKGCMC 1 cut(s) 360
BstSNI TACGTA 1 cut(s) 221
BstV2I GAAGAC 1 cut(s) 80
BstXI CCANNNNNNTGG 1 cut(s) 616
BsuI GTATCC 2 cut(s) 233, 481
BtsCI GGATG 2 cut(s) 489, 671
BtsIMutI CAGTG 3 cut(s) 123, 464, 598
Cac8I GCNNGC 1 cut(s) 647
CaiI CAGNNNCTG 1 cut(s) 125
CciI TCATGA 1 cut(s) 456
Csp6I GTAC 3 cut(s) 14, 842, 862
CviAII CATG 4 cut(s) 19, 323, 427, 457
CviJI RGCY 7 cut(s) 139, 174, 238, 649, 662, 747, 894
CviKI_1 RGCY 7 cut(s) 139, 174, 238, 649, 662, 747, 894
CviQI GTAC 3 cut(s) 14, 842, 862
DdeI CTNAG 7 cut(s) 35, 69, 175, 188, 390, 652, 895
DpnI GATC 2 cut(s) 204, 824
DpnII GATC 2 cut(s) 202, 822
Eam1104I CTCTTC 1 cut(s) 903
EarI CTCTTC 1 cut(s) 903
EciI GGCGGA 1 cut(s) 280
Eco105I TACGTA 1 cut(s) 221
Eco32I GATATC 1 cut(s) 477
Eco57I CTGAAG 2 cut(s) 244, 561
Eco88I CYCGRG 1 cut(s) 92
EcoRII CCWGG 1 cut(s) 710
EcoRV GATATC 1 cut(s) 477
FaeI CATG 4 cut(s) 22, 326, 430, 460
FalI AAGNNNNNCTT 4 cut(s) 791, 823, 878, 910
FaqI GGGAC 1 cut(s) 558
FatI CATG 4 cut(s) 18, 322, 426, 456
FbaI TGATCA 1 cut(s) 822
FokI GGATG 2 cut(s) 496, 678
FspBI CTAG 1 cut(s) 135
GsuI CTGGAG 1 cut(s) 719
HapII CCGG 1 cut(s) 308
Hin1II CATG 4 cut(s) 22, 326, 430, 460
HindIII AAGCTT 1 cut(s) 172
HinfI GANTC 7 cut(s) 5, 159, 282, 386, 432, 571, 702
HpaII CCGG 1 cut(s) 308
HphI GGTGA 2 cut(s) 199, 266
Hpy166II GTNNAC 1 cut(s) 412
Hpy188I TCNGA 5 cut(s) 27, 191, 391, 655, 728
Hpy188III TCNNGA 4 cut(s) 400, 457, 671, 833
Hpy8I GTNNAC 1 cut(s) 412
Hpy99I CGWCG 1 cut(s) 233
HpyAV CCTTC 3 cut(s) 388, 450, 561
HpyCH4III ACNGT 2 cut(s) 127, 468
HpyCH4IV ACGT 2 cut(s) 220, 683
HpyCH4V TGCA 5 cut(s) 288, 645, 755, 787, 884
HpyF10VI GCNNNNNNNGC 1 cut(s) 120
HpyF3I CTNAG 7 cut(s) 35, 69, 175, 188, 390, 652, 895
HpySE526I ACGT 2 cut(s) 220, 683
Hsp92II CATG 4 cut(s) 22, 326, 430, 460
KpnI GGTACC 1 cut(s) 17
Ksp22I TGATCA 1 cut(s) 822
Kzo9I GATC 2 cut(s) 202, 822
LmnI GCTCC 2 cut(s) 144, 243
MaeI CTAG 1 cut(s) 135
MaeII ACGT 2 cut(s) 220, 683
MaeIII GTNAC 2 cut(s) 146, 254
MalI GATC 2 cut(s) 204, 824
MboI GATC 2 cut(s) 202, 822
MboII GAAGA 6 cut(s) 85, 520, 554, 610, 773, 920
MhlI GDGCHC 1 cut(s) 360
MluCI AATT 4 cut(s) 515, 750, 774, 848
MlyI GAGTC 3 cut(s) 276, 380, 580
MmeI TCCRAC 1 cut(s) 515
MnlI CCTC 5 cut(s) 349, 357, 661, 736, 904
MroXI GAANNNNTTC 1 cut(s) 803
MseI TTAA 2 cut(s) 170, 749
MslI CAYNNNNRTG 3 cut(s) 425, 455, 496
MspI CCGG 1 cut(s) 308
MspR9I CCNGG 1 cut(s) 712
MvaI CCWGG 1 cut(s) 712
MwoI GCNNNNNNNGC 1 cut(s) 120
NdeII GATC 2 cut(s) 202, 822
NlaIII CATG 4 cut(s) 22, 326, 430, 460
NlaIV GGNNCC 3 cut(s) 15, 140, 357
NmuCI GTSAC 1 cut(s) 254
PaeR7I CTCGAG 1 cut(s) 92
PagI TCATGA 1 cut(s) 456
PdmI GAANNNNTTC 1 cut(s) 803
PfeI GAWTC 3 cut(s) 159, 432, 702
PleI GAGTC 3 cut(s) 276, 380, 579
PpsI GAGTC 3 cut(s) 276, 380, 579
Ppu21I YACGTR 1 cut(s) 221
Psp6I CCWGG 1 cut(s) 710
PspGI CCWGG 1 cut(s) 710
PspN4I GGNNCC 3 cut(s) 15, 140, 357
PspXI VCTCGAGB 1 cut(s) 92
PstI CTGCAG 1 cut(s) 789
PstNI CAGNNNCTG 1 cut(s) 125
RsaI GTAC 3 cut(s) 15, 843, 863
RsaNI GTAC 3 cut(s) 14, 842, 862
RseI CAYNNNNRTG 3 cut(s) 425, 455, 496
SaqAI TTAA 2 cut(s) 170, 749
Sau3AI GATC 2 cut(s) 202, 822
SchI GAGTC 3 cut(s) 276, 380, 580
ScrFI CCNGG 1 cut(s) 712
SduI GDGCHC 1 cut(s) 360
SfcI CTRYAG 1 cut(s) 785
Sfr274I CTCGAG 1 cut(s) 92
SlaI CTCGAG 1 cut(s) 92
SmiMI CAYNNNNRTG 3 cut(s) 425, 455, 496
SmlI CTYRAG 1 cut(s) 92
SmoI CTYRAG 1 cut(s) 92
SnaBI TACGTA 1 cut(s) 221
Sse9I AATT 4 cut(s) 515, 750, 774, 848
SsiI CCGC 1 cut(s) 265
SspI AATATT 1 cut(s) 304
SspMI CTAG 1 cut(s) 135
StyD4I CCNGG 1 cut(s) 710
TaaI ACNGT 2 cut(s) 127, 468
TaiI ACGT 2 cut(s) 223, 686
TaqI TCGA 5 cut(s) 8, 93, 298, 435, 494
TasI AATT 4 cut(s) 515, 750, 774, 848
TfiI GAWTC 3 cut(s) 159, 432, 702
Tru1I TTAA 2 cut(s) 170, 749
Tru9I TTAA 2 cut(s) 170, 749
TscAI CASTG 3 cut(s) 130, 471, 598
TseFI GTSAC 1 cut(s) 254
Tsp45I GTSAC 1 cut(s) 254
TspDTI ATGAA 4 cut(s) 432, 445, 473, 921
TspGWI ACGGA 1 cut(s) 230
TspRI CASTG 3 cut(s) 130, 471, 598
XapI RAATTY 1 cut(s) 515
XhoI CTCGAG 1 cut(s) 92
XmnI GAANNNNTTC 1 cut(s) 803
XspI CTAG 1 cut(s) 135
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.