FvH4_6g33880
ERF Family

Mitochondrial transcription termination factor family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000263
Physical Location & Seq
Reverse (-)
26817860 .. 26819068
1209 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g33880.t1

Sequence Viewer

Length: 1209 bp
ATGCTTGGTTTTTGCTGTAGAAGATTGCAGTTACTATTTCCCAGTAGCAATGCTGTTAATTCAGCTACCCATCTTCATTTTACAAGATTATATTCATCAAAATCATTGTTAGGAAATACCCAAGATGAAAAAGATTGCTCTTTTCCAGTTTCATACCTTATAAATACGTGTGGGTTATCCCCAGAACTTGCCCTCTCTTTGTTCAAGAAGCAGAGGGTACAGTTTGAATCCCCTGAAAAACCAGACTCTGTTGTTAAGCTTTTCAAGGACTATGGATTTGGGGATACCCACATCTCCGAAATTGTGAAGAAACACCCAGAGCTGCTCGTAGTCAATGCTGAGAAGACCCTTTTGCCGAAACTCGAGTTCTTTGACTCTGTTGGGATTAAAGGCACTGCCCTGTCTCAGGTCCTTTCTGGCAACCCAATTGTGTTGAAATTGAGCTTAGAGAATAATATCAGACCTTGCTATGATATCATCAAGACTCTAGGTATCCCTGATGGAAAGGTCCCTCGTTTCATTATGAAATCCCATAGGATGTTTAAGGTCAAAATACTGAGCAAAGTTGCTCGCAATGTTTCATTTCTGAGGTCACTAAATGTGCCGGAATCCACACTCGATCTGTGTAGGCCTGAGACTCTTGTTACAATGTCAACCGATGCCGGTGAGTTTAATGAAAATGTCAACAAGGTCATCAGCATGGGATTTGCTCCTTCAAGCTGTACATTTGTGAAAGCACTGTACGTAGTTTCTGTTATGGATGAGTCAAAGTTGGCAAAGAAGAAGGAGTTTTATAGAAAGTGTGGTTGGACTGAAGATGATATATTGTTGGCATTTAACAAGAATCCCATCTTTATGACCGTCTCTGAGAAGAATGTTTCAAGTAAAATGGATTTTCTTGTGAACAAAATCGGTTTGCAGCCAGCTGATGTGGCTAAATATCCCAGTATTCTAATTTATAGTTTAGAGAAGTGGATCATACCTAGGTGGTCAGTTATTAGAGTTCTGCTGTTGAAGGGCTTACTAAGGAAGGAACAATTTTCTTTAGTTGGCACCGCATTAATGGGCAGGAAAGACCAGTTCTTGCATAGGTTTGTGAATAAATATCAAGAGCAAGTACCCGAATTATTGAGCATCTTTCAAGGGAAAATTGGCCTTGCAGAACTGGGGTTAGGATTTGAGGAAACAGATGGAGTGAAACAAATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
mTERF

Protein Analysis

403

Amino Acids

45.37

Weight (kDa)

9.24

Isoelectric Point (pI)

38.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
mTERF PF02536 86 - 206 6.9e-17 mTERF
mTERF PF02536 249 - 349 5e-15 mTERF
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000263)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G21150 AT1G21150 AT1G21150
fragaria_vesca FvH4_4g17900 FvH4_6g26110 FvH4_6g33880 FvH4_6g33900 FvH4_6g34011 FvH4_6g34011 FvH4_6g34011 FvH4_6g34011 FvH4_6g34030 FvH4_6g34040 FvH4_6g34070 FvH4_6g34070 FvH4_7g12830
malus_domestica MD09G1189800.v1.1 MD09G1189900.v1.1 MD09G1190000.v1.1 MD14G1088800.v1.1 MD14G1088900.v1.1 MD17G1172900.v1.1
pyrus_communis pycom07g03460 pycom09g10650 pycom14g07860
rosa_chinensis RchiOBHm_Chr1g0351891 RchiOBHm_Chr1g0351901 RchiOBHm_Chr2g0143771 RchiOBHm_Chr2g0143861 RchiOBHm_Chr2g0143881 RchiOBHm_Chr2g0143941 RchiOBHm_Chr2g0143951 RchiOBHm_Chr2g0144081 RchiOBHm_Chr2g0144091 RchiOBHm_Chr2g0144211 RchiOBHm_Chr2g0144231 RchiOBHm_Chr2g0144241 RchiOBHm_Chr2g0144291 RchiOBHm_Chr2g0144301 RchiOBHm_Chr2g0144311 RchiOBHm_Chr2g0144331 RchiOBHm_Chr2g0144341 RchiOBHm_Chr4g0422021 RchiOBHm_Chr4g0422031
rosa_laevigata RLG00000007639 RLG00000020063 RLG00000020071 RLG00000020072 RLG00000020074
rosa_multiflora Rmu_co8214640.1_g000001 Rmu_co8471033.1_g000001 Rmu_sc0000789.1_g000002 Rmu_sc0001321.1_g000001 Rmu_sc0004340.1_g000001 Rmu_sc0004897.1_g000001 Rmu_sc0007105.1_g000005 Rmu_sc0009498.1_g000001 Rmu_sc0009498.1_g000002 Rmu_sc0019136.1_g000001 Rmu_sc0020327.1_g000002 Rmu_sc0020327.1_g000003 Rmu_sc0022905.1_g000001 Rmu_sc0032602.1_g000003 Rmu_sc0032602.1_g000004
rosa_roxburghii Rroxscaffold_2G00101380 Rroxscaffold_2G00101390 Rroxscaffold_2G00101400 Rroxscaffold_2G00101410 Rroxscaffold_2G00101480 Rroxscaffold_2G00101490 Rroxscaffold_4G00303470 Rroxscaffold_5G00364130 Rroxscaffold_5G00364150
rosa_rugosa Rorug01G0222600 Rorug02G0384700 Rorug02G0384800 Rorug02G0385800 Rorug02G0385900 Rorug02G0386000 Rorug02G0386000 Rorug02G0386100 Rorug04G0176700 Rorug04G0176800.1
rosa_samantha Rh1AG236500 Rh1AG236600 Rh1BG206900 Rh1CG221000 Rh1CG221100 Rh2BG444800 Rh2BG444900 Rh2BG446600 Rh2BG446700 Rh2BG447600 Rh2BG448100 Rh2BG448400 Rh2BG448500 Rh2BG448700 Rh2BG448800 Rh2CG423500 Rh2CG423600 Rh2CG424800 Rh2CG424900 Rh2CG425100 Rh2CG425200 Rh2DG455200 Rh2DG455300 Rh2DG456900 Rh2DG457000 Rh2DG457100 Rh2DG457600 Rh2DG457900 Rh2DG458000 Rh2DG458300 Rh2DG458400 Rh4AG236100 Rh4AG236200 Rh4BG239200 Rh4CG250900 Rh4CG251100
rosa_wichuraiana Rw0G000400 Rw0G015990 Rw0G017200 Rw1G020580 Rw2G033310 Rw2G035630 Rw2G035640 Rw2G035790 Rw2G035800 Rw2G035840 Rw2G036160 Rw4G019830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 161
AccB1I GGYRCC 1 cut(s) 1052
AciI CCGC 1 cut(s) 1056
AclWI GGATC 1 cut(s) 983
AcuI CTGAAG 1 cut(s) 834
AfaI GTAC 4 cut(s) 219, 724, 743, 1119
AfiI CCNNNNNNNGG 1 cut(s) 406
AflIII ACRYGT 1 cut(s) 167
AgsI TTSAA 8 cut(s) 205, 227, 265, 436, 717, 882, 1015, 1142
AjuI GAANNNNNNNTTGG 2 cut(s) 790, 822
AluBI AGCT 6 cut(s) 65, 259, 322, 444, 720, 926
AluI AGCT 6 cut(s) 65, 259, 322, 444, 720, 926
Alw26I GTCTC 3 cut(s) 408, 629, 868
AlwI GGATC 1 cut(s) 983
AlwNI CAGNNNCTG 1 cut(s) 248
Ama87I CYCGRG 1 cut(s) 362
AoxI GGCC 2 cut(s) 629, 1153
ApeKI GCWGC 2 cut(s) 322, 919
ArsI GACNNNNNNTTYG 2 cut(s) 260, 292
AseI ATTAAT 1 cut(s) 1061
AspA2I CCTAGG 1 cut(s) 983
AspS9I GGNCC 2 cut(s) 409, 508
AsuHPI GGTGA 1 cut(s) 677
AvaI CYCGRG 1 cut(s) 362
AvaII GGWCC 2 cut(s) 409, 508
AvrII CCTAGG 1 cut(s) 983
BanI GGYRCC 1 cut(s) 1052
BbsI GAAGAC 1 cut(s) 350
BbvI GCAGC 2 cut(s) 309, 931
BccI CCATC 4 cut(s) 78, 494, 857, 1184
BciVI GTATCC 2 cut(s) 277, 503
BcoDI GTCTC 3 cut(s) 408, 629, 868
BfaI CTAG 2 cut(s) 488, 984
BfmI CTRYAG 1 cut(s) 16
BfuI GTATCC 2 cut(s) 277, 503
BisI GCNGC 2 cut(s) 323, 920
BlnI CCTAGG 1 cut(s) 983
BlsI GCNGC 2 cut(s) 324, 921
Bme18I GGWCC 2 cut(s) 409, 508
BmeT110I CYCGRG 1 cut(s) 362
BmgT120I GGNCC 2 cut(s) 409, 508
BmiI GGNNCC 2 cut(s) 510, 1054
BmrI ACTGGG 3 cut(s) 36, 939, 1175
BmsI GCATC 2 cut(s) 649, 1143
BmuI ACTGGG 3 cut(s) 36, 939, 1175
BpiI GAAGAC 1 cut(s) 350
BsaAI YACGTR 2 cut(s) 168, 745
BsaJI CCNNGG 1 cut(s) 983
Bsc4I CCNNNNNNNGG 1 cut(s) 406
Bse118I RCCGGY 1 cut(s) 662
Bse1I ACTGG 5 cut(s) 42, 146, 945, 1078, 1170
Bse3DI GCAATG 2 cut(s) 55, 580
BseDI CCNNGG 1 cut(s) 983
BseGI GGATG 2 cut(s) 543, 766
BseLI CCNNNNNNNGG 1 cut(s) 406
BseMI GCAATG 2 cut(s) 55, 580
BseMII CTCAG 6 cut(s) 330, 419, 548, 578, 624, 858
BseNI ACTGG 5 cut(s) 42, 146, 945, 1078, 1170
BseXI GCAGC 2 cut(s) 309, 931
BshFI GGCC 2 cut(s) 631, 1155
BshNI GGYRCC 1 cut(s) 1052
BsiHKCI CYCGRG 1 cut(s) 362
BsiSI CCGG 2 cut(s) 605, 663
BslFI GGGAC 1 cut(s) 494
BslI CCNNNNNNNGG 1 cut(s) 406
BsmAI GTCTC 3 cut(s) 408, 629, 868
BsmBI CGTCTC 1 cut(s) 868
BsmFI GGGAC 1 cut(s) 494
BsnI GGCC 2 cut(s) 631, 1155
BsoBI CYCGRG 1 cut(s) 362
Bsp1407I TGTACA 1 cut(s) 722
Bsp143I GATC 2 cut(s) 619, 975
BspACI CCGC 1 cut(s) 1056
BspANI GGCC 2 cut(s) 631, 1155
BspCNI CTCAG 6 cut(s) 331, 418, 549, 579, 625, 859
BspLI GGNNCC 2 cut(s) 510, 1054
BspPI GGATC 1 cut(s) 983
BspT107I GGYRCC 1 cut(s) 1052
BsrDI GCAATG 2 cut(s) 55, 580
BsrFI RCCGGY 1 cut(s) 662
BsrGI TGTACA 1 cut(s) 722
BsrI ACTGG 5 cut(s) 42, 146, 945, 1078, 1170
BssAI RCCGGY 1 cut(s) 662
BssECI CCNNGG 1 cut(s) 983
BssMI GATC 2 cut(s) 619, 975
BssT1I CCWWGG 1 cut(s) 983
Bst4CI ACNGT 3 cut(s) 222, 741, 862
BstAUI TGTACA 1 cut(s) 722
BstBAI YACGTR 2 cut(s) 168, 745
BstC8I GCNNGC 2 cut(s) 571, 924
BstDEI CTNAG 8 cut(s) 339, 405, 445, 557, 587, 633, 867, 1025
BstENI CCTNNNNNAGG 1 cut(s) 404
BstF5I GGATG 2 cut(s) 543, 766
BstKTI GATC 2 cut(s) 622, 978
BstMAI GTCTC 3 cut(s) 408, 629, 868
BstMBI GATC 2 cut(s) 619, 975
BstMWI GCNNNNNNNGC 1 cut(s) 932
BstSFI CTRYAG 1 cut(s) 16
BstSNI TACGTA 1 cut(s) 745
BstV1I GCAGC 2 cut(s) 309, 931
BstV2I GAAGAC 1 cut(s) 350
BsuI GTATCC 2 cut(s) 277, 503
BsuRI GGCC 2 cut(s) 631, 1155
BtsCI GGATG 2 cut(s) 543, 766
BtsI GCAGTG 1 cut(s) 393
BtsIMutI CAGTG 2 cut(s) 393, 737
Cac8I GCNNGC 2 cut(s) 571, 924
CaiI CAGNNNCTG 1 cut(s) 248
Cfr10I RCCGGY 1 cut(s) 662
Cfr13I GGNCC 2 cut(s) 409, 508
Csp6I GTAC 4 cut(s) 218, 723, 742, 1118
CviAII CATG 1 cut(s) 700
CviQI GTAC 4 cut(s) 218, 723, 742, 1118
DdeI CTNAG 8 cut(s) 339, 405, 445, 557, 587, 633, 867, 1025
DpnI GATC 2 cut(s) 621, 977
DpnII GATC 2 cut(s) 619, 975
Eco105I TACGTA 1 cut(s) 745
Eco130I CCWWGG 1 cut(s) 983
Eco147I AGGCCT 1 cut(s) 631
Eco32I GATATC 1 cut(s) 475
Eco47I GGWCC 2 cut(s) 409, 508
Eco57I CTGAAG 1 cut(s) 834
Eco88I CYCGRG 1 cut(s) 362
EcoNI CCTNNNNNAGG 1 cut(s) 404
EcoO109I RGGNCCY 2 cut(s) 409, 508
EcoRV GATATC 1 cut(s) 475
EcoT14I CCWWGG 1 cut(s) 983
ErhI CCWWGG 1 cut(s) 983
Esp3I CGTCTC 1 cut(s) 868
FaeI CATG 1 cut(s) 703
FaqI GGGAC 1 cut(s) 494
FatI CATG 1 cut(s) 699
Fnu4HI GCNGC 2 cut(s) 323, 920
FokI GGATG 2 cut(s) 550, 773
Fsp4HI GCNGC 2 cut(s) 323, 920
FspBI CTAG 2 cut(s) 488, 984
GluI GCNGC 2 cut(s) 323, 920
HaeIII GGCC 2 cut(s) 631, 1155
HapII CCGG 2 cut(s) 605, 663
Hin1II CATG 1 cut(s) 703
HincII GTYRAC 2 cut(s) 654, 685
HindII GTYRAC 2 cut(s) 654, 685
HindIII AAGCTT 1 cut(s) 257
HinfI GANTC 8 cut(s) 227, 245, 374, 484, 608, 637, 764, 844
HpaII CCGG 2 cut(s) 605, 663
HphI GGTGA 1 cut(s) 677
Hpy166II GTNNAC 3 cut(s) 654, 685, 904
Hpy188I TCNGA 4 cut(s) 298, 461, 588, 868
Hpy188III TCNNGA 3 cut(s) 205, 481, 1109
Hpy8I GTNNAC 3 cut(s) 654, 685, 904
HpyAV CCTTC 4 cut(s) 723, 778, 1009, 1024
HpyCH4III ACNGT 3 cut(s) 222, 741, 862
HpyCH4IV ACGT 2 cut(s) 167, 744
HpyCH4V TGCA 4 cut(s) 28, 919, 1087, 1160
HpyF10VI GCNNNNNNNGC 1 cut(s) 932
HpyF3I CTNAG 8 cut(s) 339, 405, 445, 557, 587, 633, 867, 1025
HpySE526I ACGT 2 cut(s) 167, 744
Hsp92II CATG 1 cut(s) 703
Kzo9I GATC 2 cut(s) 619, 975
LmnI GCTCC 1 cut(s) 715
Lsp1109I GCAGC 2 cut(s) 309, 931
LweI GCATC 2 cut(s) 649, 1143
MaeI CTAG 2 cut(s) 488, 984
MaeII ACGT 2 cut(s) 167, 744
MaeIII GTNAC 3 cut(s) 30, 591, 643
MalI GATC 2 cut(s) 621, 977
MboI GATC 2 cut(s) 619, 975
MboII GAAGA 7 cut(s) 33, 65, 319, 355, 793, 827, 883
MfeI CAATTG 1 cut(s) 426
MluCI AATT 8 cut(s) 58, 300, 426, 437, 954, 1037, 1124, 1149
MlyI GAGTC 5 cut(s) 239, 368, 478, 631, 773
MmeI TCCRAC 1 cut(s) 788
MnlI CCTC 5 cut(s) 203, 207, 522, 582, 1174
MseI TTAA 7 cut(s) 57, 255, 387, 543, 672, 837, 1061
MslI CAYNNNNRTG 2 cut(s) 698, 854
MspA1I CMGCKG 1 cut(s) 926
MspI CCGG 2 cut(s) 605, 663
MunI CAATTG 1 cut(s) 426
MwoI GCNNNNNNNGC 1 cut(s) 932
NdeII GATC 2 cut(s) 619, 975
NlaIII CATG 1 cut(s) 703
NlaIV GGNNCC 2 cut(s) 510, 1054
NmuCI GTSAC 1 cut(s) 591
PaeR7I CTCGAG 1 cut(s) 362
PceI AGGCCT 1 cut(s) 631
PfeI GAWTC 3 cut(s) 227, 608, 844
PkrI GCNGC 2 cut(s) 324, 921
PleI GAGTC 5 cut(s) 239, 368, 478, 631, 772
PpsI GAGTC 5 cut(s) 239, 368, 478, 631, 772
Ppu21I YACGTR 2 cut(s) 168, 745
PpuMI RGGWCCY 2 cut(s) 409, 508
PshBI ATTAAT 1 cut(s) 1061
PsiI TTATAA 1 cut(s) 161
Psp5II RGGWCCY 2 cut(s) 409, 508
PspN4I GGNNCC 2 cut(s) 510, 1054
PspPI GGNCC 2 cut(s) 409, 508
PspPPI RGGWCCY 2 cut(s) 409, 508
PspXI VCTCGAGB 1 cut(s) 362
PstNI CAGNNNCTG 1 cut(s) 248
PvuII CAGCTG 1 cut(s) 926
RsaI GTAC 4 cut(s) 219, 724, 743, 1119
RsaNI GTAC 4 cut(s) 218, 723, 742, 1118
RseI CAYNNNNRTG 2 cut(s) 698, 854
SaqAI TTAA 7 cut(s) 57, 255, 387, 543, 672, 837, 1061
SatI GCNGC 2 cut(s) 323, 920
Sau3AI GATC 2 cut(s) 619, 975
Sau96I GGNCC 2 cut(s) 409, 508
SchI GAGTC 5 cut(s) 239, 368, 478, 631, 773
SfaNI GCATC 2 cut(s) 649, 1143
SfcI CTRYAG 1 cut(s) 16
Sfr274I CTCGAG 1 cut(s) 362
SinI GGWCC 2 cut(s) 409, 508
SlaI CTCGAG 1 cut(s) 362
SmiMI CAYNNNNRTG 2 cut(s) 698, 854
SmlI CTYRAG 1 cut(s) 362
SmoI CTYRAG 1 cut(s) 362
SnaBI TACGTA 1 cut(s) 745
Sse9I AATT 8 cut(s) 58, 300, 426, 437, 954, 1037, 1124, 1149
SseBI AGGCCT 1 cut(s) 631
SsiI CCGC 1 cut(s) 1056
SspMI CTAG 2 cut(s) 488, 984
StuI AGGCCT 1 cut(s) 631
StyI CCWWGG 1 cut(s) 983
TaaI ACNGT 3 cut(s) 222, 741, 862
TaiI ACGT 2 cut(s) 170, 747
TaqI TCGA 2 cut(s) 363, 618
TasI AATT 8 cut(s) 58, 300, 426, 437, 954, 1037, 1124, 1149
TatI WGTACW 1 cut(s) 722
TfiI GAWTC 3 cut(s) 227, 608, 844
Tru1I TTAA 7 cut(s) 57, 255, 387, 543, 672, 837, 1061
Tru9I TTAA 7 cut(s) 57, 255, 387, 543, 672, 837, 1061
TscAI CASTG 2 cut(s) 400, 744
TseFI GTSAC 1 cut(s) 591
TseI GCWGC 2 cut(s) 322, 919
Tsp45I GTSAC 1 cut(s) 591
TspDTI ATGAA 8 cut(s) 65, 84, 141, 141, 508, 539, 570, 690
TspRI CASTG 2 cut(s) 400, 744
VpaK11BI GGWCC 2 cut(s) 409, 508
VspI ATTAAT 1 cut(s) 1061
XagI CCTNNNNNAGG 1 cut(s) 404
XhoI CTCGAG 1 cut(s) 362
XmaJI CCTAGG 1 cut(s) 983
XspI CTAG 2 cut(s) 488, 984
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.