pycom07g03460
ERF Family

termination of mitochondrial transcription

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0000263
Physical Location & Seq
Reverse (-)
2845626 .. 2846264
639 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g03460.1

Sequence Viewer

Length: 414 bp
ATGCAGATTCATCCTGTTGCATTGCGCGACGAAATCAGATATGTACTGATTGGAACTGGAGCTCGATCCTCGAGCTTTGATGCCGTCATCTGGACGTTTTGTTACTCCTCTGCCAATTTGCTGCTACTTTGCAGACATTTCAGCCCAAAAATCTCAGAAAACCACGACGATTTCACAGTCAATCACCTCATACACTCATGTGGGTTGTCCAAAAAAGTGCAATTTCAGCATCCAAGATGGTCAAGCTGCGTTCTCCAGAAAGACTGGGCTTCGTTTTGTCCTTTCTCAGTAACCATTGATTCTCTCAAACCCAGATCTCGAAGATCACCAAGGATCGCTCAAAAGTTCTCTAATTCGATCATGAGGAAACCCTTCTGCCGAATCGCTAGACTTGTTGTTGGCTTCACTAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
mTERF

Protein Analysis

138

Amino Acids

15.73

Weight (kDa)

9.99

Isoelectric Point (pI)

50.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000263)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G21150 AT1G21150 AT1G21150
fragaria_vesca FvH4_4g17900 FvH4_6g26110 FvH4_6g33880 FvH4_6g33900 FvH4_6g34011 FvH4_6g34011 FvH4_6g34011 FvH4_6g34011 FvH4_6g34030 FvH4_6g34040 FvH4_6g34070 FvH4_6g34070 FvH4_7g12830
malus_domestica MD09G1189800.v1.1 MD09G1189900.v1.1 MD09G1190000.v1.1 MD14G1088800.v1.1 MD14G1088900.v1.1 MD17G1172900.v1.1
pyrus_communis pycom07g03460 pycom09g10650 pycom14g07860
rosa_chinensis RchiOBHm_Chr1g0351891 RchiOBHm_Chr1g0351901 RchiOBHm_Chr2g0143771 RchiOBHm_Chr2g0143861 RchiOBHm_Chr2g0143881 RchiOBHm_Chr2g0143941 RchiOBHm_Chr2g0143951 RchiOBHm_Chr2g0144081 RchiOBHm_Chr2g0144091 RchiOBHm_Chr2g0144211 RchiOBHm_Chr2g0144231 RchiOBHm_Chr2g0144241 RchiOBHm_Chr2g0144291 RchiOBHm_Chr2g0144301 RchiOBHm_Chr2g0144311 RchiOBHm_Chr2g0144331 RchiOBHm_Chr2g0144341 RchiOBHm_Chr4g0422021 RchiOBHm_Chr4g0422031
rosa_laevigata RLG00000007639 RLG00000020063 RLG00000020071 RLG00000020072 RLG00000020074
rosa_multiflora Rmu_co8214640.1_g000001 Rmu_co8471033.1_g000001 Rmu_sc0000789.1_g000002 Rmu_sc0001321.1_g000001 Rmu_sc0004340.1_g000001 Rmu_sc0004897.1_g000001 Rmu_sc0007105.1_g000005 Rmu_sc0009498.1_g000001 Rmu_sc0009498.1_g000002 Rmu_sc0019136.1_g000001 Rmu_sc0020327.1_g000002 Rmu_sc0020327.1_g000003 Rmu_sc0022905.1_g000001 Rmu_sc0032602.1_g000003 Rmu_sc0032602.1_g000004
rosa_roxburghii Rroxscaffold_2G00101380 Rroxscaffold_2G00101390 Rroxscaffold_2G00101400 Rroxscaffold_2G00101410 Rroxscaffold_2G00101480 Rroxscaffold_2G00101490 Rroxscaffold_4G00303470 Rroxscaffold_5G00364130 Rroxscaffold_5G00364150
rosa_rugosa Rorug01G0222600 Rorug02G0384700 Rorug02G0384800 Rorug02G0385800 Rorug02G0385900 Rorug02G0386000 Rorug02G0386000 Rorug02G0386100 Rorug04G0176700 Rorug04G0176800.1
rosa_samantha Rh1AG236500 Rh1AG236600 Rh1BG206900 Rh1CG221000 Rh1CG221100 Rh2BG444800 Rh2BG444900 Rh2BG446600 Rh2BG446700 Rh2BG447600 Rh2BG448100 Rh2BG448400 Rh2BG448500 Rh2BG448700 Rh2BG448800 Rh2CG423500 Rh2CG423600 Rh2CG424800 Rh2CG424900 Rh2CG425100 Rh2CG425200 Rh2DG455200 Rh2DG455300 Rh2DG456900 Rh2DG457000 Rh2DG457100 Rh2DG457600 Rh2DG457900 Rh2DG458000 Rh2DG458300 Rh2DG458400 Rh4AG236100 Rh4AG236200 Rh4BG239200 Rh4CG250900 Rh4CG251100
rosa_wichuraiana Rw0G000400 Rw0G015990 Rw0G017200 Rw1G020580 Rw2G033310 Rw2G035630 Rw2G035640 Rw2G035790 Rw2G035800 Rw2G035840 Rw2G036160 Rw4G019830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 27
AclWI GGATC 2 cut(s) 60, 341
AfaI GTAC 1 cut(s) 45
AfiI CCNNNNNNNGG 1 cut(s) 90
AhlI ACTAGT 1 cut(s) 407
AleI CACNNNNGTG 1 cut(s) 198
AluBI AGCT 3 cut(s) 62, 75, 246
AluI AGCT 3 cut(s) 62, 75, 246
Alw21I GWGCWC 1 cut(s) 64
AlwI GGATC 2 cut(s) 60, 341
Ama87I CYCGRG 1 cut(s) 70
ApeKI GCWGC 2 cut(s) 121, 246
Asp700I GAANNNNTTC 1 cut(s) 371
AspLEI GCGC 1 cut(s) 27
AsuHPI GGTGA 2 cut(s) 176, 318
AvaI CYCGRG 1 cut(s) 70
BanII GRGCYC 1 cut(s) 64
Bbv12I GWGCWC 1 cut(s) 64
BbvI GCAGC 2 cut(s) 108, 233
BccI CCATC 1 cut(s) 231
BceAI ACGGC 1 cut(s) 68
BcuI ACTAGT 1 cut(s) 407
BfaI CTAG 2 cut(s) 387, 408
BglII AGATCT 1 cut(s) 314
BisI GCNGC 2 cut(s) 122, 247
BlsI GCNGC 2 cut(s) 123, 248
BmeT110I CYCGRG 1 cut(s) 70
BmrI ACTGGG 1 cut(s) 274
BmsI GCATC 2 cut(s) 70, 238
BmuI ACTGGG 1 cut(s) 274
BpmI CTGGAG 2 cut(s) 78, 239
BsaJI CCNNGG 1 cut(s) 329
Bsc4I CCNNNNNNNGG 1 cut(s) 90
Bse1I ACTGG 2 cut(s) 61, 269
Bse3DI GCAATG 1 cut(s) 20
BseDI CCNNGG 1 cut(s) 329
BseGI GGATG 2 cut(s) 10, 229
BseLI CCNNNNNNNGG 1 cut(s) 90
BseMI GCAATG 1 cut(s) 20
BseMII CTCAG 2 cut(s) 168, 300
BseNI ACTGG 2 cut(s) 61, 269
BseRI GAGGAG 1 cut(s) 97
BseXI GCAGC 2 cut(s) 108, 233
Bsh1236I CGCG 1 cut(s) 27
BsiHKAI GWGCWC 1 cut(s) 64
BsiHKCI CYCGRG 1 cut(s) 70
BslI CCNNNNNNNGG 1 cut(s) 90
BsoBI CYCGRG 1 cut(s) 70
Bsp1286I GDGCHC 1 cut(s) 64
Bsp143I GATC 5 cut(s) 65, 314, 323, 333, 357
BspCNI CTCAG 2 cut(s) 167, 299
BspFNI CGCG 1 cut(s) 27
BspHI TCATGA 1 cut(s) 360
BspPI GGATC 2 cut(s) 60, 341
BsrDI GCAATG 1 cut(s) 20
BsrI ACTGG 2 cut(s) 61, 269
BssECI CCNNGG 1 cut(s) 329
BssMI GATC 5 cut(s) 65, 314, 323, 333, 357
BssT1I CCWWGG 1 cut(s) 329
Bst4CI ACNGT 1 cut(s) 178
BstDEI CTNAG 2 cut(s) 154, 286
BstF5I GGATG 2 cut(s) 10, 229
BstFNI CGCG 1 cut(s) 27
BstHHI GCGC 1 cut(s) 27
BstKTI GATC 5 cut(s) 68, 317, 326, 336, 360
BstMBI GATC 5 cut(s) 65, 314, 323, 333, 357
BstMWI GCNNNNNNNGC 1 cut(s) 226
BstUI CGCG 1 cut(s) 27
BstV1I GCAGC 2 cut(s) 108, 233
BstX2I RGATCY 1 cut(s) 314
BstYI RGATCY 1 cut(s) 314
BtsCI GGATG 2 cut(s) 10, 229
CciI TCATGA 1 cut(s) 360
CfoI GCGC 1 cut(s) 27
Csp6I GTAC 1 cut(s) 44
CviAII CATG 2 cut(s) 198, 361
CviJI RGCY 6 cut(s) 62, 75, 144, 246, 269, 402
CviKI_1 RGCY 6 cut(s) 62, 75, 144, 246, 269, 402
CviQI GTAC 1 cut(s) 44
DdeI CTNAG 2 cut(s) 154, 286
DpnI GATC 5 cut(s) 67, 316, 325, 335, 359
DpnII GATC 5 cut(s) 65, 314, 323, 333, 357
Ecl136II GAGCTC 1 cut(s) 62
Eco130I CCWWGG 1 cut(s) 329
Eco24I GRGCYC 1 cut(s) 64
Eco53kI GAGCTC 1 cut(s) 62
Eco88I CYCGRG 1 cut(s) 70
EcoICRI GAGCTC 1 cut(s) 62
EcoT14I CCWWGG 1 cut(s) 329
EcoT38I GRGCYC 1 cut(s) 64
ErhI CCWWGG 1 cut(s) 329
FaeI CATG 2 cut(s) 201, 364
FaiI YATR 4 cut(s) 42, 191, 199, 362
FatI CATG 2 cut(s) 197, 360
Fnu4HI GCNGC 2 cut(s) 122, 247
FokI GGATG 1 cut(s) 216
FriOI GRGCYC 1 cut(s) 64
Fsp4HI GCNGC 2 cut(s) 122, 247
FspBI CTAG 2 cut(s) 387, 408
GlaI GCGC 1 cut(s) 26
GluI GCNGC 2 cut(s) 122, 247
GsuI CTGGAG 2 cut(s) 78, 239
HhaI GCGC 1 cut(s) 27
Hin1II CATG 2 cut(s) 201, 364
Hin6I GCGC 1 cut(s) 25
HinP1I GCGC 1 cut(s) 25
HinfI GANTC 3 cut(s) 7, 299, 381
HphI GGTGA 2 cut(s) 176, 318
Hpy188I TCNGA 2 cut(s) 38, 157
Hpy188III TCNNGA 4 cut(s) 91, 256, 318, 361
Hpy99I CGWCG 2 cut(s) 32, 170
HpyAV CCTTC 1 cut(s) 382
HpyCH4III ACNGT 1 cut(s) 178
HpyCH4IV ACGT 1 cut(s) 95
HpyCH4V TGCA 4 cut(s) 4, 20, 132, 220
HpyF10VI GCNNNNNNNGC 1 cut(s) 226
HpyF3I CTNAG 2 cut(s) 154, 286
HpySE526I ACGT 1 cut(s) 95
Hsp92II CATG 2 cut(s) 201, 364
HspAI GCGC 1 cut(s) 25
Kzo9I GATC 5 cut(s) 65, 314, 323, 333, 357
LmnI GCTCC 1 cut(s) 59
LpnPI CCDG 6 cut(s) 27, 42, 76, 250, 269, 325
Lsp1109I GCAGC 2 cut(s) 108, 233
LweI GCATC 2 cut(s) 70, 238
MaeI CTAG 2 cut(s) 387, 408
MaeII ACGT 1 cut(s) 95
MaeIII GTNAC 2 cut(s) 101, 289
MalI GATC 5 cut(s) 67, 316, 325, 335, 359
MboI GATC 5 cut(s) 65, 314, 323, 333, 357
MboII GAAGA 1 cut(s) 333
MflI RGATCY 1 cut(s) 314
MhlI GDGCHC 1 cut(s) 64
MluCI AATT 3 cut(s) 115, 221, 352
MnlI CCTC 4 cut(s) 79, 118, 197, 357
MroXI GAANNNNTTC 1 cut(s) 371
MslI CAYNNNNRTG 1 cut(s) 198
MvnI CGCG 1 cut(s) 27
MwoI GCNNNNNNNGC 1 cut(s) 226
NdeII GATC 5 cut(s) 65, 314, 323, 333, 357
NlaIII CATG 2 cut(s) 201, 364
OliI CACNNNNGTG 1 cut(s) 198
PaeR7I CTCGAG 1 cut(s) 70
PagI TCATGA 1 cut(s) 360
PdmI GAANNNNTTC 1 cut(s) 371
PfeI GAWTC 3 cut(s) 7, 299, 381
PkrI GCNGC 2 cut(s) 123, 248
Psp124BI GAGCTC 1 cut(s) 64
PspXI VCTCGAGB 1 cut(s) 70
PsuI RGATCY 1 cut(s) 314
RsaI GTAC 1 cut(s) 45
RsaNI GTAC 1 cut(s) 44
RseI CAYNNNNRTG 1 cut(s) 198
SacI GAGCTC 1 cut(s) 64
SatI GCNGC 2 cut(s) 122, 247
Sau3AI GATC 5 cut(s) 65, 314, 323, 333, 357
SduI GDGCHC 1 cut(s) 64
SetI ASST 5 cut(s) 64, 77, 98, 189, 248
SfaNI GCATC 2 cut(s) 70, 238
Sfr274I CTCGAG 1 cut(s) 70
SlaI CTCGAG 1 cut(s) 70
SmiMI CAYNNNNRTG 1 cut(s) 198
SmlI CTYRAG 1 cut(s) 70
SmoI CTYRAG 1 cut(s) 70
SpeI ACTAGT 1 cut(s) 407
Sse9I AATT 3 cut(s) 115, 221, 352
SspMI CTAG 2 cut(s) 387, 408
SstI GAGCTC 1 cut(s) 64
StyI CCWWGG 1 cut(s) 329
TaaI ACNGT 1 cut(s) 178
TaiI ACGT 1 cut(s) 98
TaqI TCGA 4 cut(s) 64, 71, 319, 356
TasI AATT 3 cut(s) 115, 221, 352
TatI WGTACW 1 cut(s) 43
TfiI GAWTC 3 cut(s) 7, 299, 381
TseI GCWGC 2 cut(s) 121, 246
XhoI CTCGAG 1 cut(s) 70
XmnI GAANNNNTTC 1 cut(s) 371
XspI CTAG 2 cut(s) 387, 408
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.