Rh2BG448500
ERF Family

mTERF

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0000263
Physical Location & Seq
Forward (+)
63328806 .. 63331314
2509 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG448500.1

Sequence Viewer

Length: 918 bp
ATGGACTCAGTGATGCCCACATCTCTGACATTGTTAAGAAATGCCCAGTTTTGCTTGTATCCAATGCTGAAAAGACCCTTTGGCCAAAACTCCAGTTTTTCACTTCCATTGGCCTTTCGGGCAATGACCTTGCCCGGATCTTCCGTGTCAACTTGCGTTATCTTGACATTGAGCTTAGAGAGAAGTATTAGACCTTGTTATGATATTATGAAAACTCTAGAAATACCTGAGCATAAGGTCCCTTATTTCATTAGCAACTATTATATGTTTAACCCCAAAGTATTGAGCAATGTACCTCACAACACTTTGATTCTGAGAGCGCATCAGGTGCCAGAAGCGTCATTTCCTCTGTGGGTGTGTTCTCATTTGCTTGCACTGTCATTTGACTCTGAGAAGGTTAAGACAAATGTCGAGAAGGTCATCAGCATGGGATTTGACCCTTCGTCTACTACATTCATGAAAGCTTTGTATGTGGTATCGGTGACCAATGCAGCAAAGCGGAAACACAAGATGGAATTTTATGAGAAGTGGGGTTGGACTGAAGATGATGTGTTGTTGGCATTTAGAAAGAATCCCATGTTTATGAGCTTCAGTGTGAAGAATATTTCAGCTAAAATGGATTTTCTTTTGAATAAAATGGGTTGCCAGCCTGCAGATCTGGCTGCACGTCCAGATGTTCTGACTTATAGTTTGGAGAAGCAAATCATACCTAGGTGGTCAGTCATCAGATTTCTCCAGTTAAAGGGCTTAATTGTCAAGGAAGATTTATATATAATTAGCGTTGTGCACAAAAACGAGAAGTGGTTCTTGGAAAGGTTTGTGATCAAATATGAAGAACAAGCACCTGAATTGCAGAGCATCTTACAGGGGAAAATGGGTCTAGCCGAATTTGGTTTAGGATTCGACGAAAGTGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
mTERF

Protein Analysis

305

Amino Acids

34.96

Weight (kDa)

8.94

Isoelectric Point (pI)

53.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
mTERF PF02536 126 - 269 4.1e-16 mTERF
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000263)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G21150 AT1G21150 AT1G21150
fragaria_vesca FvH4_4g17900 FvH4_6g26110 FvH4_6g33880 FvH4_6g33900 FvH4_6g34011 FvH4_6g34011 FvH4_6g34011 FvH4_6g34011 FvH4_6g34030 FvH4_6g34040 FvH4_6g34070 FvH4_6g34070 FvH4_7g12830
malus_domestica MD09G1189800.v1.1 MD09G1189900.v1.1 MD09G1190000.v1.1 MD14G1088800.v1.1 MD14G1088900.v1.1 MD17G1172900.v1.1
pyrus_communis pycom07g03460 pycom09g10650 pycom14g07860
rosa_chinensis RchiOBHm_Chr1g0351891 RchiOBHm_Chr1g0351901 RchiOBHm_Chr2g0143771 RchiOBHm_Chr2g0143861 RchiOBHm_Chr2g0143881 RchiOBHm_Chr2g0143941 RchiOBHm_Chr2g0143951 RchiOBHm_Chr2g0144081 RchiOBHm_Chr2g0144091 RchiOBHm_Chr2g0144211 RchiOBHm_Chr2g0144231 RchiOBHm_Chr2g0144241 RchiOBHm_Chr2g0144291 RchiOBHm_Chr2g0144301 RchiOBHm_Chr2g0144311 RchiOBHm_Chr2g0144331 RchiOBHm_Chr2g0144341 RchiOBHm_Chr4g0422021 RchiOBHm_Chr4g0422031
rosa_laevigata RLG00000007639 RLG00000020063 RLG00000020071 RLG00000020072 RLG00000020074
rosa_multiflora Rmu_co8214640.1_g000001 Rmu_co8471033.1_g000001 Rmu_sc0000789.1_g000002 Rmu_sc0001321.1_g000001 Rmu_sc0004340.1_g000001 Rmu_sc0004897.1_g000001 Rmu_sc0007105.1_g000005 Rmu_sc0009498.1_g000001 Rmu_sc0009498.1_g000002 Rmu_sc0019136.1_g000001 Rmu_sc0020327.1_g000002 Rmu_sc0020327.1_g000003 Rmu_sc0022905.1_g000001 Rmu_sc0032602.1_g000003 Rmu_sc0032602.1_g000004
rosa_roxburghii Rroxscaffold_2G00101380 Rroxscaffold_2G00101390 Rroxscaffold_2G00101400 Rroxscaffold_2G00101410 Rroxscaffold_2G00101480 Rroxscaffold_2G00101490 Rroxscaffold_4G00303470 Rroxscaffold_5G00364130 Rroxscaffold_5G00364150
rosa_rugosa Rorug01G0222600 Rorug02G0384700 Rorug02G0384800 Rorug02G0385800 Rorug02G0385900 Rorug02G0386000 Rorug02G0386000 Rorug02G0386100 Rorug04G0176700 Rorug04G0176800.1
rosa_samantha Rh1AG236500 Rh1AG236600 Rh1BG206900 Rh1CG221000 Rh1CG221100 Rh2BG444800 Rh2BG444900 Rh2BG446600 Rh2BG446700 Rh2BG447600 Rh2BG448100 Rh2BG448400 Rh2BG448500 Rh2BG448700 Rh2BG448800 Rh2CG423500 Rh2CG423600 Rh2CG424800 Rh2CG424900 Rh2CG425100 Rh2CG425200 Rh2DG455200 Rh2DG455300 Rh2DG456900 Rh2DG457000 Rh2DG457100 Rh2DG457600 Rh2DG457900 Rh2DG458000 Rh2DG458300 Rh2DG458400 Rh4AG236100 Rh4AG236200 Rh4BG239200 Rh4CG250900 Rh4CG251100
rosa_wichuraiana Rw0G000400 Rw0G015990 Rw0G017200 Rw1G020580 Rw2G033310 Rw2G035630 Rw2G035640 Rw2G035790 Rw2G035800 Rw2G035840 Rw2G036160 Rw4G019830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 328
AccI GTMKAC 1 cut(s) 446
AciI CCGC 1 cut(s) 499
AclWI GGATC 1 cut(s) 145
AcoI YGGCCR 1 cut(s) 82
AcsI RAATTY 2 cut(s) 515, 887
AcuI CTGAAG 2 cut(s) 561, 574
AfaI GTAC 1 cut(s) 294
AfiI CCNNNNNNNGG 1 cut(s) 742
AgsI TTSAA 1 cut(s) 631
AhdI GACNNNNNGTC 1 cut(s) 442
AjiI CACGTC 1 cut(s) 668
AjuI GAANNNNNNNTTGG 2 cut(s) 791, 823
AluBI AGCT 4 cut(s) 174, 464, 588, 611
AluI AGCT 4 cut(s) 174, 464, 588, 611
Alw21I GWGCWC 1 cut(s) 789
Alw44I GTGCAC 1 cut(s) 785
AlwI GGATC 1 cut(s) 145
AoxI GGCC 2 cut(s) 82, 111
ApaLI GTGCAC 1 cut(s) 785
ApeKI GCWGC 2 cut(s) 491, 662
ApoI RAATTY 2 cut(s) 515, 887
ArsI GACNNNNNNTTYG 2 cut(s) 673, 705
Asp700I GAANNNNTTC 1 cut(s) 803
AspA2I CCTAGG 1 cut(s) 710
AspLEI GCGC 1 cut(s) 322
AspS9I GGNCC 1 cut(s) 238
AsuC2I CCSGG 1 cut(s) 135
AsuHPI GGTGA 1 cut(s) 493
AvaII GGWCC 1 cut(s) 238
AvrII CCTAGG 1 cut(s) 710
BaeGI GKGCMC 1 cut(s) 789
BalI TGGCCA 1 cut(s) 84
BanI GGYRCC 1 cut(s) 328
Bbv12I GWGCWC 1 cut(s) 789
BbvI GCAGC 2 cut(s) 503, 649
BccI CCATC 1 cut(s) 505
BciVI GTATCC 1 cut(s) 69
BclI TGATCA 1 cut(s) 822
BcnI CCSGG 1 cut(s) 135
BfaI CTAG 3 cut(s) 218, 711, 881
BfmI CTRYAG 1 cut(s) 651
BfuI GTATCC 1 cut(s) 69
BglI GCCNNNNNGGC 1 cut(s) 119
BglII AGATCT 1 cut(s) 655
BisI GCNGC 2 cut(s) 492, 663
BlnI CCTAGG 1 cut(s) 710
BlsI GCNGC 2 cut(s) 493, 664
Bme1390I CCNGG 1 cut(s) 135
Bme18I GGWCC 1 cut(s) 238
BmeRI GACNNNNNGTC 1 cut(s) 442
BmgBI CACGTC 1 cut(s) 668
BmgT120I GGNCC 1 cut(s) 238
BmiI GGNNCC 2 cut(s) 240, 330
BmrFI CCNGG 1 cut(s) 135
BmrI ACTGGG 1 cut(s) 40
BmsI GCATC 3 cut(s) 3, 331, 867
BmuI ACTGGG 1 cut(s) 40
BoxI GACNNNNGTC 1 cut(s) 407
BpmI CTGGAG 2 cut(s) 76, 719
Bpu10I CCTNAGC 1 cut(s) 228
BpuMI CCSGG 1 cut(s) 135
BsaJI CCNNGG 1 cut(s) 710
Bsc4I CCNNNNNNNGG 1 cut(s) 742
Bse1I ACTGG 3 cut(s) 46, 93, 736
Bse3DI GCAATG 2 cut(s) 129, 295
BseDI CCNNGG 1 cut(s) 710
BseLI CCNNNNNNNGG 1 cut(s) 742
BseMI GCAATG 2 cut(s) 129, 295
BseMII CTCAG 4 cut(s) 21, 219, 305, 381
BseNI ACTGG 3 cut(s) 46, 93, 736
BseSI GKGCMC 1 cut(s) 789
BseXI GCAGC 2 cut(s) 503, 649
BsgI GTGCAG 1 cut(s) 648
BshFI GGCC 2 cut(s) 84, 113
BshNI GGYRCC 1 cut(s) 328
BsiHKAI GWGCWC 1 cut(s) 789
BsiSI CCGG 1 cut(s) 135
BslFI GGGAC 1 cut(s) 224
BslI CCNNNNNNNGG 1 cut(s) 742
BsmFI GGGAC 1 cut(s) 224
BsnI GGCC 2 cut(s) 84, 113
Bsp1286I GDGCHC 1 cut(s) 789
Bsp143I GATC 3 cut(s) 137, 655, 822
BspACI CCGC 1 cut(s) 499
BspANI GGCC 2 cut(s) 84, 113
BspCNI CTCAG 4 cut(s) 20, 220, 306, 382
BspHI TCATGA 1 cut(s) 456
BspLI GGNNCC 2 cut(s) 240, 330
BspMAI CTGCAG 1 cut(s) 655
BspPI GGATC 1 cut(s) 145
BspT107I GGYRCC 1 cut(s) 328
BsrDI GCAATG 2 cut(s) 129, 295
BsrI ACTGG 3 cut(s) 46, 93, 736
BssECI CCNNGG 1 cut(s) 710
BssMI GATC 3 cut(s) 137, 655, 822
BssT1I CCWWGG 1 cut(s) 710
Bst4CI ACNGT 1 cut(s) 378
BstAPI GCANNNNNTGC 1 cut(s) 328
BstC8I GCNNGC 3 cut(s) 372, 647, 651
BstDEI CTNAG 5 cut(s) 7, 175, 228, 314, 390
BstEII GGTNACC 1 cut(s) 481
BstHHI GCGC 1 cut(s) 322
BstKTI GATC 3 cut(s) 140, 658, 825
BstMBI GATC 3 cut(s) 137, 655, 822
BstMWI GCNNNNNNNGC 3 cut(s) 119, 328, 659
BstPAI GACNNNNGTC 1 cut(s) 407
BstPI GGTNACC 1 cut(s) 481
BstSCI CCNGG 1 cut(s) 133
BstSFI CTRYAG 1 cut(s) 651
BstSLI GKGCMC 1 cut(s) 789
BstV1I GCAGC 2 cut(s) 503, 649
BstX2I RGATCY 2 cut(s) 137, 655
BstYI RGATCY 2 cut(s) 137, 655
BsuI GTATCC 1 cut(s) 69
BsuRI GGCC 2 cut(s) 84, 113
BtrI CACGTC 1 cut(s) 668
BtsIMutI CAGTG 3 cut(s) 15, 374, 598
Cac8I GCNNGC 3 cut(s) 372, 647, 651
CciI TCATGA 1 cut(s) 456
CfoI GCGC 1 cut(s) 322
Cfr13I GGNCC 1 cut(s) 238
CseI GACGC 1 cut(s) 327
Csp6I GTAC 1 cut(s) 293
CviAII CATG 3 cut(s) 427, 457, 577
CviQI GTAC 1 cut(s) 293
DdeI CTNAG 5 cut(s) 7, 175, 228, 314, 390
DpnI GATC 3 cut(s) 139, 657, 824
DpnII GATC 3 cut(s) 137, 655, 822
DriI GACNNNNNGTC 1 cut(s) 442
EaeI YGGCCR 1 cut(s) 82
Eam1105I GACNNNNNGTC 1 cut(s) 442
Eco130I CCWWGG 1 cut(s) 710
Eco47I GGWCC 1 cut(s) 238
Eco57I CTGAAG 2 cut(s) 561, 574
Eco91I GGTNACC 1 cut(s) 481
EcoO109I RGGNCCY 1 cut(s) 238
EcoO65I GGTNACC 1 cut(s) 481
EcoT14I CCWWGG 1 cut(s) 710
ErhI CCWWGG 1 cut(s) 710
FaeI CATG 3 cut(s) 430, 460, 580
FalI AAGNNNNNCTT 2 cut(s) 791, 823
FaqI GGGAC 1 cut(s) 224
FatI CATG 3 cut(s) 426, 456, 576
FbaI TGATCA 1 cut(s) 822
FblI GTMKAC 1 cut(s) 446
Fnu4HI GCNGC 2 cut(s) 492, 663
Fsp4HI GCNGC 2 cut(s) 492, 663
FspBI CTAG 3 cut(s) 218, 711, 881
GlaI GCGC 1 cut(s) 321
GluI GCNGC 2 cut(s) 492, 663
GsuI CTGGAG 2 cut(s) 76, 719
HaeIII GGCC 2 cut(s) 84, 113
HapII CCGG 1 cut(s) 135
HgaI GACGC 1 cut(s) 327
HhaI GCGC 1 cut(s) 322
Hin1II CATG 3 cut(s) 430, 460, 580
Hin6I GCGC 1 cut(s) 320
HinP1I GCGC 1 cut(s) 320
HincII GTYRAC 1 cut(s) 150
HindII GTYRAC 1 cut(s) 150
HindIII AAGCTT 1 cut(s) 462
HinfI GANTC 5 cut(s) 5, 310, 386, 571, 900
HpaII CCGG 1 cut(s) 135
HphI GGTGA 1 cut(s) 493
Hpy166II GTNNAC 3 cut(s) 150, 447, 787
Hpy188I TCNGA 5 cut(s) 27, 315, 391, 681, 728
Hpy188III TCNNGA 5 cut(s) 163, 218, 412, 457, 671
Hpy8I GTNNAC 3 cut(s) 150, 447, 787
Hpy99I CGWCG 1 cut(s) 908
HpyAV CCTTC 3 cut(s) 388, 409, 450
HpyCH4III ACNGT 1 cut(s) 378
HpyCH4IV ACGT 1 cut(s) 667
HpyCH4V TGCA 6 cut(s) 374, 491, 653, 665, 787, 853
HpyF10VI GCNNNNNNNGC 3 cut(s) 119, 328, 659
HpyF3I CTNAG 5 cut(s) 7, 175, 228, 314, 390
HpySE526I ACGT 1 cut(s) 667
Hsp92II CATG 3 cut(s) 430, 460, 580
HspAI GCGC 1 cut(s) 320
Ksp22I TGATCA 1 cut(s) 822
Kzo9I GATC 3 cut(s) 137, 655, 822
Lsp1109I GCAGC 2 cut(s) 503, 649
LweI GCATC 3 cut(s) 3, 331, 867
MaeI CTAG 3 cut(s) 218, 711, 881
MaeII ACGT 1 cut(s) 667
MaeIII GTNAC 1 cut(s) 481
MalI GATC 3 cut(s) 139, 657, 824
MboI GATC 3 cut(s) 137, 655, 822
MboII GAAGA 5 cut(s) 132, 554, 610, 773, 845
MflI RGATCY 2 cut(s) 137, 655
MhlI GDGCHC 1 cut(s) 789
MlsI TGGCCA 1 cut(s) 84
MluCI AATT 5 cut(s) 515, 750, 774, 848, 887
MluNI TGGCCA 1 cut(s) 84
MlyI GAGTC 1 cut(s) 380
MmeI TCCRAC 1 cut(s) 515
MnlI CCTC 2 cut(s) 306, 357
Mox20I TGGCCA 1 cut(s) 84
MroXI GAANNNNTTC 1 cut(s) 803
MscI TGGCCA 1 cut(s) 84
MseI TTAA 5 cut(s) 35, 270, 399, 740, 749
MslI CAYNNNNRTG 2 cut(s) 425, 581
Msp20I TGGCCA 1 cut(s) 84
MspI CCGG 1 cut(s) 135
MspR9I CCNGG 1 cut(s) 135
MwoI GCNNNNNNNGC 3 cut(s) 119, 328, 659
NciI CCSGG 1 cut(s) 135
NdeII GATC 3 cut(s) 137, 655, 822
NlaIII CATG 3 cut(s) 430, 460, 580
NlaIV GGNNCC 2 cut(s) 240, 330
NmuCI GTSAC 1 cut(s) 481
PagI TCATGA 1 cut(s) 456
PdmI GAANNNNTTC 1 cut(s) 803
PfeI GAWTC 3 cut(s) 310, 571, 900
PkrI GCNGC 2 cut(s) 493, 664
PleI GAGTC 1 cut(s) 380
PpsI GAGTC 1 cut(s) 380
PpuMI RGGWCCY 1 cut(s) 238
PshAI GACNNNNGTC 1 cut(s) 407
Psp5II RGGWCCY 1 cut(s) 238
PspEI GGTNACC 1 cut(s) 481
PspN4I GGNNCC 2 cut(s) 240, 330
PspPI GGNCC 1 cut(s) 238
PspPPI RGGWCCY 1 cut(s) 238
PstI CTGCAG 1 cut(s) 655
PsuI RGATCY 2 cut(s) 137, 655
RsaI GTAC 1 cut(s) 294
RsaNI GTAC 1 cut(s) 293
RseI CAYNNNNRTG 2 cut(s) 425, 581
SaqAI TTAA 5 cut(s) 35, 270, 399, 740, 749
SatI GCNGC 2 cut(s) 492, 663
Sau3AI GATC 3 cut(s) 137, 655, 822
Sau96I GGNCC 1 cut(s) 238
SchI GAGTC 1 cut(s) 380
ScrFI CCNGG 1 cut(s) 135
SduI GDGCHC 1 cut(s) 789
SfaNI GCATC 3 cut(s) 3, 331, 867
SfcI CTRYAG 1 cut(s) 651
SinI GGWCC 1 cut(s) 238
SmiMI CAYNNNNRTG 2 cut(s) 425, 581
Sse9I AATT 5 cut(s) 515, 750, 774, 848, 887
SsiI CCGC 1 cut(s) 499
SspI AATATT 1 cut(s) 604
SspMI CTAG 3 cut(s) 218, 711, 881
StyD4I CCNGG 1 cut(s) 133
StyI CCWWGG 1 cut(s) 710
TaaI ACNGT 1 cut(s) 378
TaiI ACGT 1 cut(s) 670
TaqI TCGA 2 cut(s) 411, 903
TasI AATT 5 cut(s) 515, 750, 774, 848, 887
TfiI GAWTC 3 cut(s) 310, 571, 900
Tru1I TTAA 5 cut(s) 35, 270, 399, 740, 749
Tru9I TTAA 5 cut(s) 35, 270, 399, 740, 749
TscAI CASTG 3 cut(s) 15, 381, 598
TseFI GTSAC 1 cut(s) 481
TseI GCWGC 2 cut(s) 491, 662
Tsp45I GTSAC 1 cut(s) 481
TspDTI ATGAA 5 cut(s) 224, 238, 445, 473, 846
TspGWI ACGGA 1 cut(s) 133
TspRI CASTG 3 cut(s) 15, 381, 598
VneI GTGCAC 1 cut(s) 785
VpaK11BI GGWCC 1 cut(s) 238
XapI RAATTY 2 cut(s) 515, 887
XbaI TCTAGA 1 cut(s) 217
XmaJI CCTAGG 1 cut(s) 710
XmiI GTMKAC 1 cut(s) 446
XmnI GAANNNNTTC 1 cut(s) 803
XspI CTAG 3 cut(s) 218, 711, 881
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.