FvH4_6g34040
ERF Family

mTERF

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000263
Physical Location & Seq
Forward (+)
26917973 .. 26919824
1852 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g34040.t1

Sequence Viewer

Length: 1209 bp
ATGTTTGGTGTTTACTGTAAAAGAATGCAACTTCTAGTCCCAAATTCACTTAGCCATTTCCATTTCTTTCAAAAGCTACCTCCTTTAAGCAGACCATACTCATCACTATTAGAATCTGATGATGATAAACCCCAAGATCACTATTTTACTGTTTCATACCTCATCAACTCACTTGGGTTTTCCCCAAAACTAGCTCTCTCTTTGTCCAAGACCCATAAGCTTCGGCTTAAATCTCCAGAAAGACCAGACTCGGTTATTAGGCTTCTCAAACACTATGGTTTCAGTGATACCCAGATACCCGAAATTGTTAAGAAACAACCATCCTTGCTTTTATGCAATGCTGAGAAGATTCTTGCGCCCAAACTCCAGTTTTTGGGCTCTATTGGACTTTCAGCCACCACCATTGCTGAGGTCATGAATTACAACCAACGCATTTTGGCTCAAAGCTTGGAGAGAAGTCTCAAACCGTGCTATGACATTATCAAAAGTGTCCCCATCCCCGACGACATGGTGGCTGTTTTCTTTAAGAACTCAAGGCGAGCAATGGGGGTCAAATTACTAAGCAATCTTCCTCCTAATATTTCAGTTCTTAGGGAAATTCAGGTCCCGGAATCGGCCATCTTATTTTGTGTGACCTATCATCCTCTTGTGTTGGCCCCTAATACTAGCAAGCTTAGGGAAAGTGTAAACAAGATCATTAATATTGGAATTCTGCCTTCGAGTTTTACTTTCATGAAGGCGCTACAAGTGGTCTCTCAGATGGATGAATCAAAGTGGGCACAAAAGAAGGAGTTCTATAAGAAGTGTGGTTGGACTGAAGAAGATTTTCTGTTTGCATTTAGAAAGAACCCCTTGTTTATGAGCTTGTCAGAGAAGAACAGTTCAAGTAAAATGGAGTTTCTTGTGAACGAAATGGGTTGGCGGTCTGCAGATGTGGCTGAATATCCGGATATTCTTACTCATAGTTTGGAAAAGTCTATCATTCCTAGGTGTTCAGTTATTAGAGTTCTTCAATACAAGGGTTTGATCAAAAAGGGAGAACGTTCTCTATCCACCATGCTGATAAACAGTAAGAAGCGCTTCCATGATAGGTTTGTGAGCAAATATCAGGAGCGAGCACCTGAACTGTTGAGTATTATTCAAGGGAAAATGTCTCTTGCAGAATTTGGTCTAGGATTTGAGGAAAGAGGTGGAGTGAAACAATTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
mTERF

Protein Analysis

403

Amino Acids

45.9

Weight (kDa)

9.54

Isoelectric Point (pI)

49.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
mTERF PF02536 87 - 216 9.4e-18 mTERF
mTERF PF02536 214 - 361 8.6e-22 mTERF
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000263)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G21150 AT1G21150 AT1G21150
fragaria_vesca FvH4_4g17900 FvH4_6g26110 FvH4_6g33880 FvH4_6g33900 FvH4_6g34011 FvH4_6g34011 FvH4_6g34011 FvH4_6g34011 FvH4_6g34030 FvH4_6g34040 FvH4_6g34070 FvH4_6g34070 FvH4_7g12830
malus_domestica MD09G1189800.v1.1 MD09G1189900.v1.1 MD09G1190000.v1.1 MD14G1088800.v1.1 MD14G1088900.v1.1 MD17G1172900.v1.1
pyrus_communis pycom07g03460 pycom09g10650 pycom14g07860
rosa_chinensis RchiOBHm_Chr1g0351891 RchiOBHm_Chr1g0351901 RchiOBHm_Chr2g0143771 RchiOBHm_Chr2g0143861 RchiOBHm_Chr2g0143881 RchiOBHm_Chr2g0143941 RchiOBHm_Chr2g0143951 RchiOBHm_Chr2g0144081 RchiOBHm_Chr2g0144091 RchiOBHm_Chr2g0144211 RchiOBHm_Chr2g0144231 RchiOBHm_Chr2g0144241 RchiOBHm_Chr2g0144291 RchiOBHm_Chr2g0144301 RchiOBHm_Chr2g0144311 RchiOBHm_Chr2g0144331 RchiOBHm_Chr2g0144341 RchiOBHm_Chr4g0422021 RchiOBHm_Chr4g0422031
rosa_laevigata RLG00000007639 RLG00000020063 RLG00000020071 RLG00000020072 RLG00000020074
rosa_multiflora Rmu_co8214640.1_g000001 Rmu_co8471033.1_g000001 Rmu_sc0000789.1_g000002 Rmu_sc0001321.1_g000001 Rmu_sc0004340.1_g000001 Rmu_sc0004897.1_g000001 Rmu_sc0007105.1_g000005 Rmu_sc0009498.1_g000001 Rmu_sc0009498.1_g000002 Rmu_sc0019136.1_g000001 Rmu_sc0020327.1_g000002 Rmu_sc0020327.1_g000003 Rmu_sc0022905.1_g000001 Rmu_sc0032602.1_g000003 Rmu_sc0032602.1_g000004
rosa_roxburghii Rroxscaffold_2G00101380 Rroxscaffold_2G00101390 Rroxscaffold_2G00101400 Rroxscaffold_2G00101410 Rroxscaffold_2G00101480 Rroxscaffold_2G00101490 Rroxscaffold_4G00303470 Rroxscaffold_5G00364130 Rroxscaffold_5G00364150
rosa_rugosa Rorug01G0222600 Rorug02G0384700 Rorug02G0384800 Rorug02G0385800 Rorug02G0385900 Rorug02G0386000 Rorug02G0386000 Rorug02G0386100 Rorug04G0176700 Rorug04G0176800.1
rosa_samantha Rh1AG236500 Rh1AG236600 Rh1BG206900 Rh1CG221000 Rh1CG221100 Rh2BG444800 Rh2BG444900 Rh2BG446600 Rh2BG446700 Rh2BG447600 Rh2BG448100 Rh2BG448400 Rh2BG448500 Rh2BG448700 Rh2BG448800 Rh2CG423500 Rh2CG423600 Rh2CG424800 Rh2CG424900 Rh2CG425100 Rh2CG425200 Rh2DG455200 Rh2DG455300 Rh2DG456900 Rh2DG457000 Rh2DG457100 Rh2DG457600 Rh2DG457900 Rh2DG458000 Rh2DG458300 Rh2DG458400 Rh4AG236100 Rh4AG236200 Rh4BG239200 Rh4CG250900 Rh4CG251100
rosa_wichuraiana Rw0G000400 Rw0G015990 Rw0G017200 Rw1G020580 Rw2G033310 Rw2G035630 Rw2G035640 Rw2G035790 Rw2G035800 Rw2G035840 Rw2G036160 Rw4G019830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 373
AccIII TCCGGA 1 cut(s) 946
AciI CCGC 1 cut(s) 922
AclI AACGTT 1 cut(s) 1042
AcoI YGGCCR 1 cut(s) 615
AcsI RAATTY 4 cut(s) 43, 597, 708, 1163
AcuI CTGAAG 1 cut(s) 837
AfeI AGCGCT 1 cut(s) 1079
AfiI CCNNNNNNNGG 2 cut(s) 373, 613
AgsI TTSAA 4 cut(s) 71, 885, 1013, 1142
AluBI AGCT 6 cut(s) 76, 194, 220, 447, 673, 864
AluI AGCT 6 cut(s) 76, 194, 220, 447, 673, 864
Alw21I GWGCWC 1 cut(s) 1120
Alw26I GTCTC 3 cut(s) 464, 757, 1158
Aor13HI TCCGGA 1 cut(s) 946
Aor51HI AGCGCT 1 cut(s) 1079
AoxI GGCC 2 cut(s) 615, 654
ApoI RAATTY 4 cut(s) 43, 597, 708, 1163
AseI ATTAAT 1 cut(s) 699
Asp700I GAANNNNTTC 3 cut(s) 791, 825, 1079
AspA2I CCTAGG 1 cut(s) 986
AspLEI GCGC 3 cut(s) 358, 742, 1080
AspS9I GGNCC 2 cut(s) 604, 655
AsuC2I CCSGG 1 cut(s) 608
AvaII GGWCC 1 cut(s) 604
AvrII CCTAGG 1 cut(s) 986
BaeGI GKGCMC 1 cut(s) 781
BanII GRGCYC 1 cut(s) 380
Bbv12I GWGCWC 1 cut(s) 1120
BbvCI CCTCAGC 1 cut(s) 408
BccI CCATC 4 cut(s) 328, 503, 626, 754
BclI TGATCA 1 cut(s) 1026
BcnI CCSGG 1 cut(s) 608
BcoDI GTCTC 3 cut(s) 464, 757, 1158
BfaI CTAG 5 cut(s) 35, 191, 666, 987, 1172
BfmI CTRYAG 1 cut(s) 927
BfoI RGCGCY 2 cut(s) 743, 1081
BlnI CCTAGG 1 cut(s) 986
Bme1390I CCNGG 1 cut(s) 608
Bme18I GGWCC 1 cut(s) 604
BmgT120I GGNCC 2 cut(s) 604, 655
BmiI GGNNCC 2 cut(s) 606, 657
BmrFI CCNGG 1 cut(s) 608
BpmI CTGGAG 2 cut(s) 219, 350
Bpu10I CCTNAGC 2 cut(s) 408, 674
BpuEI CTTGAG 1 cut(s) 517
BpuMI CCSGG 1 cut(s) 608
BsaI GGTCTC 1 cut(s) 757
BsaJI CCNNGG 1 cut(s) 986
BsaWI WCCGGW 1 cut(s) 946
Bsc4I CCNNNNNNNGG 2 cut(s) 373, 613
Bse1I ACTGG 1 cut(s) 367
Bse3DI GCAATG 3 cut(s) 343, 402, 549
BseAI TCCGGA 1 cut(s) 946
BseDI CCNNGG 1 cut(s) 986
BseGI GGATG 4 cut(s) 320, 495, 640, 769
BseLI CCNNNNNNNGG 2 cut(s) 373, 613
BseMI GCAATG 3 cut(s) 343, 402, 549
BseMII CTCAG 3 cut(s) 333, 399, 770
BseNI ACTGG 1 cut(s) 367
BseSI GKGCMC 1 cut(s) 781
BshFI GGCC 2 cut(s) 617, 656
BsiHKAI GWGCWC 1 cut(s) 1120
BsiSI CCGG 2 cut(s) 608, 947
BslFI GGGAC 3 cut(s) 23, 476, 590
BslI CCNNNNNNNGG 2 cut(s) 373, 613
BsmAI GTCTC 3 cut(s) 464, 757, 1158
BsmFI GGGAC 3 cut(s) 23, 476, 590
BsmI GAATGC 1 cut(s) 30
BsnI GGCC 2 cut(s) 617, 656
Bso31I GGTCTC 1 cut(s) 757
Bsp1286I GDGCHC 3 cut(s) 380, 781, 1120
Bsp13I TCCGGA 1 cut(s) 946
Bsp143I GATC 3 cut(s) 136, 693, 1026
BspACI CCGC 1 cut(s) 922
BspANI GGCC 2 cut(s) 617, 656
BspCNI CTCAG 3 cut(s) 334, 400, 769
BspEI TCCGGA 1 cut(s) 946
BspHI TCATGA 2 cut(s) 414, 732
BspLI GGNNCC 2 cut(s) 606, 657
BspMAI CTGCAG 1 cut(s) 931
BspTNI GGTCTC 1 cut(s) 757
BsrDI GCAATG 3 cut(s) 343, 402, 549
BsrI ACTGG 1 cut(s) 367
BssECI CCNNGG 1 cut(s) 986
BssMI GATC 3 cut(s) 136, 693, 1026
BssT1I CCWWGG 1 cut(s) 986
Bst4CI ACNGT 6 cut(s) 17, 151, 468, 881, 1070, 1128
BstC8I GCNNGC 3 cut(s) 540, 671, 1116
BstDEI CTNAG 7 cut(s) 50, 342, 408, 560, 590, 674, 756
BstF5I GGATG 4 cut(s) 320, 495, 640, 769
BstH2I RGCGCY 2 cut(s) 743, 1081
BstHHI GCGC 3 cut(s) 358, 742, 1080
BstKTI GATC 3 cut(s) 139, 696, 1029
BstMAI GTCTC 3 cut(s) 464, 757, 1158
BstMBI GATC 3 cut(s) 136, 693, 1026
BstMWI GCNNNNNNNGC 1 cut(s) 935
BstSCI CCNGG 1 cut(s) 606
BstSFI CTRYAG 1 cut(s) 927
BstSLI GKGCMC 1 cut(s) 781
BsuRI GGCC 2 cut(s) 617, 656
BtsCI GGATG 4 cut(s) 320, 495, 640, 769
BtsIMutI CAGTG 1 cut(s) 289
Cac8I GCNNGC 3 cut(s) 540, 671, 1116
CciI TCATGA 2 cut(s) 414, 732
CfoI GCGC 3 cut(s) 358, 742, 1080
Cfr13I GGNCC 2 cut(s) 604, 655
CspCI CAANNNNNGTGG 2 cut(s) 385, 420
CviAII CATG 5 cut(s) 415, 508, 733, 1057, 1085
DdeI CTNAG 7 cut(s) 50, 342, 408, 560, 590, 674, 756
DpnI GATC 3 cut(s) 138, 695, 1028
DpnII GATC 3 cut(s) 136, 693, 1026
EaeI YGGCCR 1 cut(s) 615
Eco130I CCWWGG 1 cut(s) 986
Eco24I GRGCYC 1 cut(s) 380
Eco31I GGTCTC 1 cut(s) 757
Eco47I GGWCC 1 cut(s) 604
Eco47III AGCGCT 1 cut(s) 1079
Eco57I CTGAAG 1 cut(s) 837
EcoO109I RGGNCCY 1 cut(s) 604
EcoRI GAATTC 1 cut(s) 708
EcoT14I CCWWGG 1 cut(s) 986
EcoT38I GRGCYC 1 cut(s) 380
ErhI CCWWGG 1 cut(s) 986
FaeI CATG 5 cut(s) 418, 511, 736, 1060, 1088
FalI AAGNNNNNCTT 4 cut(s) 836, 868, 1064, 1096
FaqI GGGAC 3 cut(s) 23, 476, 590
FatI CATG 5 cut(s) 414, 507, 732, 1056, 1084
FbaI TGATCA 1 cut(s) 1026
FokI GGATG 4 cut(s) 307, 482, 627, 776
FriOI GRGCYC 1 cut(s) 380
FspBI CTAG 5 cut(s) 35, 191, 666, 987, 1172
GlaI GCGC 3 cut(s) 357, 741, 1079
GsuI CTGGAG 2 cut(s) 219, 350
HaeII RGCGCY 2 cut(s) 743, 1081
HaeIII GGCC 2 cut(s) 617, 656
HapII CCGG 2 cut(s) 608, 947
HhaI GCGC 3 cut(s) 358, 742, 1080
Hin1II CATG 5 cut(s) 418, 511, 736, 1060, 1088
Hin6I GCGC 3 cut(s) 356, 740, 1078
HinP1I GCGC 3 cut(s) 356, 740, 1078
HindIII AAGCTT 3 cut(s) 218, 445, 671
HinfI GANTC 5 cut(s) 113, 248, 349, 611, 767
HpaII CCGG 2 cut(s) 608, 947
Hpy166II GTNNAC 3 cut(s) 13, 688, 907
Hpy188I TCNGA 3 cut(s) 118, 759, 871
Hpy188III TCNNGA 5 cut(s) 236, 415, 733, 947, 1109
Hpy8I GTNNAC 3 cut(s) 13, 688, 907
Hpy99I CGWCG 1 cut(s) 506
HpyAV CCTTC 3 cut(s) 726, 730, 781
HpyCH4III ACNGT 6 cut(s) 17, 151, 468, 881, 1070, 1128
HpyCH4IV ACGT 1 cut(s) 1042
HpyCH4V TGCA 5 cut(s) 28, 336, 836, 929, 1160
HpyF10VI GCNNNNNNNGC 1 cut(s) 935
HpyF3I CTNAG 7 cut(s) 50, 342, 408, 560, 590, 674, 756
HpySE526I ACGT 1 cut(s) 1042
Hsp92II CATG 5 cut(s) 418, 511, 736, 1060, 1088
HspAI GCGC 3 cut(s) 356, 740, 1078
Kpn2I TCCGGA 1 cut(s) 946
Ksp22I TGATCA 1 cut(s) 1026
Kzo9I GATC 3 cut(s) 136, 693, 1026
LmnI GCTCC 1 cut(s) 1111
LpnPI CCDG 9 cut(s) 249, 258, 305, 380, 587, 621, 960, 1094, 1134
MaeI CTAG 5 cut(s) 35, 191, 666, 987, 1172
MaeII ACGT 1 cut(s) 1042
MaeIII GTNAC 1 cut(s) 631
MalI GATC 3 cut(s) 138, 695, 1028
MboI GATC 3 cut(s) 136, 693, 1026
MboII GAAGA 6 cut(s) 358, 560, 830, 833, 886, 1001
MfeI CAATTG 1 cut(s) 1202
MhlI GDGCHC 3 cut(s) 380, 781, 1120
MluCI AATT 8 cut(s) 43, 303, 418, 554, 597, 708, 1163, 1202
MlyI GAGTC 1 cut(s) 242
MmeI TCCRAC 1 cut(s) 791
MnlI CCTC 7 cut(s) 90, 170, 403, 582, 654, 1174, 1181
MroI TCCGGA 1 cut(s) 946
MroXI GAANNNNTTC 3 cut(s) 791, 825, 1079
MseI TTAA 5 cut(s) 86, 228, 309, 525, 699
MspI CCGG 2 cut(s) 608, 947
MspR9I CCNGG 1 cut(s) 608
MunI CAATTG 1 cut(s) 1202
Mva1269I GAATGC 1 cut(s) 30
MwoI GCNNNNNNNGC 1 cut(s) 935
NciI CCSGG 1 cut(s) 608
NdeII GATC 3 cut(s) 136, 693, 1026
NlaIII CATG 5 cut(s) 418, 511, 736, 1060, 1088
NlaIV GGNNCC 2 cut(s) 606, 657
NmuCI GTSAC 1 cut(s) 631
PagI TCATGA 2 cut(s) 414, 732
PctI GAATGC 1 cut(s) 30
PdmI GAANNNNTTC 3 cut(s) 791, 825, 1079
PfeI GAWTC 4 cut(s) 113, 349, 611, 767
PflMI CCANNNNNTGG 1 cut(s) 373
PfoI TCCNGGA 1 cut(s) 606
PleI GAGTC 1 cut(s) 242
PpsI GAGTC 1 cut(s) 242
PpuMI RGGWCCY 1 cut(s) 604
PshBI ATTAAT 1 cut(s) 699
Psp1406I AACGTT 1 cut(s) 1042
Psp5II RGGWCCY 1 cut(s) 604
PspN4I GGNNCC 2 cut(s) 606, 657
PspPI GGNCC 2 cut(s) 604, 655
PspPPI RGGWCCY 1 cut(s) 604
PstI CTGCAG 1 cut(s) 931
SaqAI TTAA 5 cut(s) 86, 228, 309, 525, 699
Sau3AI GATC 3 cut(s) 136, 693, 1026
Sau96I GGNCC 2 cut(s) 604, 655
SchI GAGTC 1 cut(s) 242
ScrFI CCNGG 1 cut(s) 608
SduI GDGCHC 3 cut(s) 380, 781, 1120
SfcI CTRYAG 1 cut(s) 927
SinI GGWCC 1 cut(s) 604
SmlI CTYRAG 1 cut(s) 532
SmoI CTYRAG 1 cut(s) 532
Sse9I AATT 8 cut(s) 43, 303, 418, 554, 597, 708, 1163, 1202
SsiI CCGC 1 cut(s) 922
SspI AATATT 2 cut(s) 580, 703
SspMI CTAG 5 cut(s) 35, 191, 666, 987, 1172
StyD4I CCNGG 1 cut(s) 606
StyI CCWWGG 1 cut(s) 986
TaaI ACNGT 6 cut(s) 17, 151, 468, 881, 1070, 1128
TaiI ACGT 1 cut(s) 1045
TaqI TCGA 1 cut(s) 719
TasI AATT 8 cut(s) 43, 303, 418, 554, 597, 708, 1163, 1202
TfiI GAWTC 4 cut(s) 113, 349, 611, 767
Tru1I TTAA 5 cut(s) 86, 228, 309, 525, 699
Tru9I TTAA 5 cut(s) 86, 228, 309, 525, 699
TscAI CASTG 1 cut(s) 289
TseFI GTSAC 1 cut(s) 631
Tsp45I GTSAC 1 cut(s) 631
TspDTI ATGAA 5 cut(s) 144, 431, 721, 749, 780
TspRI CASTG 1 cut(s) 289
Van91I CCANNNNNTGG 1 cut(s) 373
VpaK11BI GGWCC 1 cut(s) 604
VspI ATTAAT 1 cut(s) 699
XapI RAATTY 4 cut(s) 43, 597, 708, 1163
XmaJI CCTAGG 1 cut(s) 986
XmnI GAANNNNTTC 3 cut(s) 791, 825, 1079
XspI CTAG 5 cut(s) 35, 191, 666, 987, 1172
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.