RchiOBHm_Chr2g0144341
ERF Family

mTERF

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000263
Physical Location & Seq
Forward (+)
61963026 .. 61966771
3746 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ51429

Sequence Viewer

Length: 867 bp
ATGGTTAAGAAAGACCCAAGGCTGCTCTTATTCAAAGCTGAGAAGATCTTTCTGCCCAAGCTTGAGTTTTTCAGTTCCATGGGCATTTCAGGCACTGTCCTTGCTAGGCTCCTTTGTAACAACCCAAGAATCTTGGCATTAAGCTTAGAGAGAAGTCTCAGACCTTGTTATGATATCACCAAAACTCTACATATCCCCGATGAAAAGCTCGCTTATTTCTTTAGTGACTTCAGGCGGACTACTTTCAAAAGATTGTGCATTGTTGCTCGCAATGTTCAAGTTCTGAGAGCACATGGTGTGCCACAATCCTCATTTCCTCTGTGGGTGCCCTTTTATTTTAATGCACTGTCCTATGACTCTGAGAGGGTCAAAGAAAATATTGACAAGGTCATCAGCATGGGACTCCGCCCTTCATCTGCCACATTCATGAGAGCACTGTTTGTGATATCAGTGACGGATGCATCAAAATGGGAACAGAAGATGGAATTTTATAGAAACTGGGGTCTGACTGAAGATGACGTGTTGTTGGCATTTAGAAAGAGTCCCTTGTTTATGTCCTTCAGTGAGAAGATTATATCCAGTAAAATGGATTTTTATGTGAATACAATGGGTTGCCAGCCCTCAGATGTGGCTGGATGTCCAGATGTTCTAACCTATAGTTTGGAGAAGCGAATCATACCTAGGTGTTCAGTTATCAGACTTCTCCAGTTAGAGGGCTTAATCGCAAAGGAAGATGTATCTATAAGTACTATTCTGAAGACAAGCGAGAAGTGGTTCTTGGAAAGGTTTGTGATCAAATATCAAGGGCAAGTACCTGAATTGCTGACATCTTACAAGGAAAAATCAGTCTTGCAAAATTTGGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
mTERF

Protein Analysis

288

Amino Acids

33.25

Weight (kDa)

9.36

Isoelectric Point (pI)

45.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
mTERF PF02536 2 - 103 5.2e-08 mTERF
mTERF PF02536 91 - 259 1.4e-20 mTERF
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000263)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G21150 AT1G21150 AT1G21150
fragaria_vesca FvH4_4g17900 FvH4_6g26110 FvH4_6g33880 FvH4_6g33900 FvH4_6g34011 FvH4_6g34011 FvH4_6g34011 FvH4_6g34011 FvH4_6g34030 FvH4_6g34040 FvH4_6g34070 FvH4_6g34070 FvH4_7g12830
malus_domestica MD09G1189800.v1.1 MD09G1189900.v1.1 MD09G1190000.v1.1 MD14G1088800.v1.1 MD14G1088900.v1.1 MD17G1172900.v1.1
pyrus_communis pycom07g03460 pycom09g10650 pycom14g07860
rosa_chinensis RchiOBHm_Chr1g0351891 RchiOBHm_Chr1g0351901 RchiOBHm_Chr2g0143771 RchiOBHm_Chr2g0143861 RchiOBHm_Chr2g0143881 RchiOBHm_Chr2g0143941 RchiOBHm_Chr2g0143951 RchiOBHm_Chr2g0144081 RchiOBHm_Chr2g0144091 RchiOBHm_Chr2g0144211 RchiOBHm_Chr2g0144231 RchiOBHm_Chr2g0144241 RchiOBHm_Chr2g0144291 RchiOBHm_Chr2g0144301 RchiOBHm_Chr2g0144311 RchiOBHm_Chr2g0144331 RchiOBHm_Chr2g0144341 RchiOBHm_Chr4g0422021 RchiOBHm_Chr4g0422031
rosa_laevigata RLG00000007639 RLG00000020063 RLG00000020071 RLG00000020072 RLG00000020074
rosa_multiflora Rmu_co8214640.1_g000001 Rmu_co8471033.1_g000001 Rmu_sc0000789.1_g000002 Rmu_sc0001321.1_g000001 Rmu_sc0004340.1_g000001 Rmu_sc0004897.1_g000001 Rmu_sc0007105.1_g000005 Rmu_sc0009498.1_g000001 Rmu_sc0009498.1_g000002 Rmu_sc0019136.1_g000001 Rmu_sc0020327.1_g000002 Rmu_sc0020327.1_g000003 Rmu_sc0022905.1_g000001 Rmu_sc0032602.1_g000003 Rmu_sc0032602.1_g000004
rosa_roxburghii Rroxscaffold_2G00101380 Rroxscaffold_2G00101390 Rroxscaffold_2G00101400 Rroxscaffold_2G00101410 Rroxscaffold_2G00101480 Rroxscaffold_2G00101490 Rroxscaffold_4G00303470 Rroxscaffold_5G00364130 Rroxscaffold_5G00364150
rosa_rugosa Rorug01G0222600 Rorug02G0384700 Rorug02G0384800 Rorug02G0385800 Rorug02G0385900 Rorug02G0386000 Rorug02G0386000 Rorug02G0386100 Rorug04G0176700 Rorug04G0176800.1
rosa_samantha Rh1AG236500 Rh1AG236600 Rh1BG206900 Rh1CG221000 Rh1CG221100 Rh2BG444800 Rh2BG444900 Rh2BG446600 Rh2BG446700 Rh2BG447600 Rh2BG448100 Rh2BG448400 Rh2BG448500 Rh2BG448700 Rh2BG448800 Rh2CG423500 Rh2CG423600 Rh2CG424800 Rh2CG424900 Rh2CG425100 Rh2CG425200 Rh2DG455200 Rh2DG455300 Rh2DG456900 Rh2DG457000 Rh2DG457100 Rh2DG457600 Rh2DG457900 Rh2DG458000 Rh2DG458300 Rh2DG458400 Rh4AG236100 Rh4AG236200 Rh4BG239200 Rh4CG250900 Rh4CG251100
rosa_wichuraiana Rw0G000400 Rw0G015990 Rw0G017200 Rw1G020580 Rw2G033310 Rw2G035630 Rw2G035640 Rw2G035790 Rw2G035800 Rw2G035840 Rw2G036160 Rw4G019830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 325
AciI CCGC 2 cut(s) 235, 406
AcsI RAATTY 2 cut(s) 485, 856
AcuI CTGAAG 4 cut(s) 214, 531, 544, 776
AdeI CACNNNGTG 1 cut(s) 296
AfaI GTAC 2 cut(s) 748, 813
AfiI CCNNNNNNNGG 1 cut(s) 712
AflIII ACRYGT 1 cut(s) 519
AgsI TTSAA 3 cut(s) 34, 247, 278
AjiI CACGTC 1 cut(s) 520
AjuI GAANNNNNNNTTGG 2 cut(s) 761, 793
AluBI AGCT 4 cut(s) 38, 61, 144, 208
AluI AGCT 4 cut(s) 38, 61, 144, 208
Alw21I GWGCWC 2 cut(s) 292, 436
Alw26I GTCTC 1 cut(s) 161
AlwNI CAGNNNCTG 1 cut(s) 95
ApeKI GCWGC 1 cut(s) 22
ApoI RAATTY 2 cut(s) 485, 856
Asp700I GAANNNNTTC 1 cut(s) 773
AspA2I CCTAGG 1 cut(s) 680
AsuHPI GGTGA 1 cut(s) 169
AvrII CCTAGG 1 cut(s) 680
BaeGI GKGCMC 1 cut(s) 330
BanI GGYRCC 1 cut(s) 325
BbsI GAAGAC 1 cut(s) 764
Bbv12I GWGCWC 2 cut(s) 292, 436
BbvI GCAGC 1 cut(s) 9
BccI CCATC 1 cut(s) 475
BclI TGATCA 1 cut(s) 792
BcoDI GTCTC 1 cut(s) 161
BfaI CTAG 2 cut(s) 105, 681
BfmI CTRYAG 1 cut(s) 655
BglII AGATCT 1 cut(s) 45
BisI GCNGC 1 cut(s) 23
BlnI CCTAGG 1 cut(s) 680
BlsI GCNGC 1 cut(s) 24
BmcAI AGTACT 1 cut(s) 748
BmgBI CACGTC 1 cut(s) 520
BmiI GGNNCC 2 cut(s) 110, 327
BmrI ACTGGG 1 cut(s) 508
BmsI GCATC 2 cut(s) 448, 470
BmuI ACTGGG 1 cut(s) 508
BpiI GAAGAC 1 cut(s) 764
BpmI CTGGAG 1 cut(s) 689
BpuEI CTTGAG 1 cut(s) 83
BsaJI CCNNGG 3 cut(s) 17, 78, 680
Bsc4I CCNNNNNNNGG 1 cut(s) 712
Bse1I ACTGG 3 cut(s) 503, 579, 706
Bse3DI GCAATG 1 cut(s) 277
BseDI CCNNGG 3 cut(s) 17, 78, 680
BseGI GGATG 2 cut(s) 463, 641
BseLI CCNNNNNNNGG 1 cut(s) 712
BseMI GCAATG 1 cut(s) 277
BseMII CTCAG 5 cut(s) 30, 172, 275, 351, 636
BseNI ACTGG 3 cut(s) 503, 579, 706
BseSI GKGCMC 1 cut(s) 330
BseXI GCAGC 1 cut(s) 9
BshNI GGYRCC 1 cut(s) 325
BsiHKAI GWGCWC 2 cut(s) 292, 436
BslFI GGGAC 2 cut(s) 414, 528
BslI CCNNNNNNNGG 1 cut(s) 712
BsmAI GTCTC 1 cut(s) 161
BsmFI GGGAC 2 cut(s) 414, 528
Bsp1286I GDGCHC 3 cut(s) 292, 330, 436
Bsp143I GATC 2 cut(s) 45, 792
Bsp19I CCATGG 1 cut(s) 78
BspACI CCGC 2 cut(s) 235, 406
BspCNI CTCAG 5 cut(s) 31, 171, 276, 352, 635
BspHI TCATGA 1 cut(s) 426
BspLI GGNNCC 2 cut(s) 110, 327
BspT107I GGYRCC 1 cut(s) 325
BsrDI GCAATG 1 cut(s) 277
BsrI ACTGG 3 cut(s) 503, 579, 706
BssECI CCNNGG 3 cut(s) 17, 78, 680
BssMI GATC 2 cut(s) 45, 792
BssT1I CCWWGG 3 cut(s) 17, 78, 680
Bst4CI ACNGT 3 cut(s) 97, 348, 438
BstC8I GCNNGC 3 cut(s) 210, 268, 617
BstDEI CTNAG 7 cut(s) 39, 145, 158, 284, 360, 622, 864
BstDSI CCRYGG 1 cut(s) 78
BstF5I GGATG 2 cut(s) 463, 641
BstKTI GATC 2 cut(s) 48, 795
BstMAI GTCTC 1 cut(s) 161
BstMBI GATC 2 cut(s) 45, 792
BstMWI GCNNNNNNNGC 1 cut(s) 90
BstSFI CTRYAG 1 cut(s) 655
BstSLI GKGCMC 1 cut(s) 330
BstV1I GCAGC 1 cut(s) 9
BstV2I GAAGAC 1 cut(s) 764
BstX2I RGATCY 1 cut(s) 45
BstXI CCANNNNNNTGG 1 cut(s) 586
BstYI RGATCY 1 cut(s) 45
BtgI CCRYGG 1 cut(s) 78
BtrI CACGTC 1 cut(s) 520
BtsCI GGATG 2 cut(s) 463, 641
BtsIMutI CAGTG 5 cut(s) 93, 344, 434, 456, 568
Cac8I GCNNGC 3 cut(s) 210, 268, 617
CaiI CAGNNNCTG 1 cut(s) 95
CciI TCATGA 1 cut(s) 426
Csp6I GTAC 2 cut(s) 747, 812
CviAII CATG 4 cut(s) 79, 293, 397, 427
CviQI GTAC 2 cut(s) 747, 812
DdeI CTNAG 7 cut(s) 39, 145, 158, 284, 360, 622, 864
DpnI GATC 2 cut(s) 47, 794
DpnII GATC 2 cut(s) 45, 792
DraIII CACNNNGTG 1 cut(s) 296
EciI GGCGGA 2 cut(s) 250, 395
Eco130I CCWWGG 3 cut(s) 17, 78, 680
Eco32I GATATC 2 cut(s) 175, 447
Eco57I CTGAAG 4 cut(s) 214, 531, 544, 776
EcoRV GATATC 2 cut(s) 175, 447
EcoT14I CCWWGG 3 cut(s) 17, 78, 680
EcoT22I ATGCAT 1 cut(s) 463
ErhI CCWWGG 3 cut(s) 17, 78, 680
FaeI CATG 4 cut(s) 82, 296, 400, 430
FalI AAGNNNNNCTT 4 cut(s) 530, 562, 761, 793
FaqI GGGAC 2 cut(s) 414, 528
FatI CATG 4 cut(s) 78, 292, 396, 426
FbaI TGATCA 1 cut(s) 792
Fnu4HI GCNGC 1 cut(s) 23
FokI GGATG 2 cut(s) 470, 648
Fsp4HI GCNGC 1 cut(s) 23
FspBI CTAG 2 cut(s) 105, 681
GluI GCNGC 1 cut(s) 23
GsuI CTGGAG 1 cut(s) 689
Hin1II CATG 4 cut(s) 82, 296, 400, 430
HindIII AAGCTT 2 cut(s) 59, 142
HinfI GANTC 5 cut(s) 129, 356, 402, 541, 672
HphI GGTGA 1 cut(s) 169
Hpy188I TCNGA 7 cut(s) 161, 285, 361, 507, 625, 698, 756
Hpy188III TCNNGA 2 cut(s) 427, 641
HpyAV CCTTC 2 cut(s) 420, 568
HpyCH4III ACNGT 3 cut(s) 97, 348, 438
HpyCH4IV ACGT 1 cut(s) 519
HpyCH4V TGCA 4 cut(s) 258, 344, 461, 853
HpyF10VI GCNNNNNNNGC 1 cut(s) 90
HpyF3I CTNAG 7 cut(s) 39, 145, 158, 284, 360, 622, 864
HpySE526I ACGT 1 cut(s) 519
Hsp92II CATG 4 cut(s) 82, 296, 400, 430
Ksp22I TGATCA 1 cut(s) 792
Kzo9I GATC 2 cut(s) 45, 792
LmnI GCTCC 1 cut(s) 114
LpnPI CCDG 9 cut(s) 75, 217, 484, 592, 618, 629, 654, 719, 828
Lsp1109I GCAGC 1 cut(s) 9
LweI GCATC 2 cut(s) 448, 470
MaeI CTAG 2 cut(s) 105, 681
MaeII ACGT 1 cut(s) 519
MaeIII GTNAC 3 cut(s) 116, 224, 451
MalI GATC 2 cut(s) 47, 794
MboI GATC 2 cut(s) 45, 792
MboII GAAGA 6 cut(s) 55, 490, 524, 580, 743, 769
MflI RGATCY 1 cut(s) 45
MhlI GDGCHC 3 cut(s) 292, 330, 436
MluCI AATT 3 cut(s) 485, 818, 856
MlyI GAGTC 3 cut(s) 350, 396, 550
MnlI CCTC 5 cut(s) 319, 327, 357, 631, 706
Mph1103I ATGCAT 1 cut(s) 463
MroXI GAANNNNTTC 1 cut(s) 773
MseI TTAA 4 cut(s) 6, 140, 339, 719
MslI CAYNNNNRTG 3 cut(s) 395, 425, 466
MwoI GCNNNNNNNGC 1 cut(s) 90
NcoI CCATGG 1 cut(s) 78
NdeII GATC 2 cut(s) 45, 792
NlaIII CATG 4 cut(s) 82, 296, 400, 430
NlaIV GGNNCC 2 cut(s) 110, 327
NmuCI GTSAC 2 cut(s) 224, 451
NsiI ATGCAT 1 cut(s) 463
PagI TCATGA 1 cut(s) 426
PdmI GAANNNNTTC 1 cut(s) 773
PfeI GAWTC 2 cut(s) 129, 672
PflFI GACNNNGTC 1 cut(s) 386
PkrI GCNGC 1 cut(s) 24
PleI GAGTC 3 cut(s) 350, 396, 549
PpsI GAGTC 3 cut(s) 350, 396, 549
PspN4I GGNNCC 2 cut(s) 110, 327
PstNI CAGNNNCTG 1 cut(s) 95
PsuI RGATCY 1 cut(s) 45
PsyI GACNNNGTC 1 cut(s) 386
RsaI GTAC 2 cut(s) 748, 813
RsaNI GTAC 2 cut(s) 747, 812
RseI CAYNNNNRTG 3 cut(s) 395, 425, 466
SaqAI TTAA 4 cut(s) 6, 140, 339, 719
SatI GCNGC 1 cut(s) 23
Sau3AI GATC 2 cut(s) 45, 792
ScaI AGTACT 1 cut(s) 748
SchI GAGTC 3 cut(s) 350, 396, 550
SduI GDGCHC 3 cut(s) 292, 330, 436
SfaNI GCATC 2 cut(s) 448, 470
SfcI CTRYAG 1 cut(s) 655
SmiMI CAYNNNNRTG 3 cut(s) 395, 425, 466
SmlI CTYRAG 1 cut(s) 62
SmoI CTYRAG 1 cut(s) 62
Sse9I AATT 3 cut(s) 485, 818, 856
SsiI CCGC 2 cut(s) 235, 406
SspI AATATT 1 cut(s) 379
SspMI CTAG 2 cut(s) 105, 681
StyI CCWWGG 3 cut(s) 17, 78, 680
TaaI ACNGT 3 cut(s) 97, 348, 438
TaiI ACGT 1 cut(s) 522
TasI AATT 3 cut(s) 485, 818, 856
TatI WGTACW 1 cut(s) 746
TfiI GAWTC 2 cut(s) 129, 672
Tru1I TTAA 4 cut(s) 6, 140, 339, 719
Tru9I TTAA 4 cut(s) 6, 140, 339, 719
TscAI CASTG 5 cut(s) 100, 351, 441, 456, 568
TseFI GTSAC 2 cut(s) 224, 451
TseI GCWGC 1 cut(s) 22
Tsp45I GTSAC 2 cut(s) 224, 451
TspDTI ATGAA 3 cut(s) 216, 402, 415
TspGWI ACGGA 1 cut(s) 470
TspRI CASTG 5 cut(s) 100, 351, 441, 456, 568
Tth111I GACNNNGTC 1 cut(s) 386
XapI RAATTY 2 cut(s) 485, 856
XmaJI CCTAGG 1 cut(s) 680
XmnI GAANNNNTTC 1 cut(s) 773
XspI CTAG 2 cut(s) 105, 681
ZrmI AGTACT 1 cut(s) 748
Zsp2I ATGCAT 1 cut(s) 463
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.