Rroxscaffold_5G00364130
ERF Family

Mitochondrial transcription termination factor family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000263
Physical Location & Seq
Forward (+)
45426306 .. 45429178
2873 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00364130.1

Sequence Viewer

Length: 1167 bp
ATGGCTCAAGACAACGGTGAATACGGCGCTGCGGTGGTCGAACAGTTCGTTGAACCGAACCCGGAGTCGCGAGAAGAGCGAGCAAGTCCGAGTCCAAGCCAAGAGAAAGATGGCTCTTTTACAGTTTCATACCTTGTAAACTCATGTGGGTTGTCACCAGAAGTCGCTCTCTCTTTGTCCAAGGAGAGGGTACACTTCAAATCCAGAGAGAAACCAGACTCGGTTATTAAGCTTCTGAAAAAGTATGGATTCAATGATACCGACATATCCCAACTTGTTAAGAAATTCCCAGAAGTGCTTGGGGCTAAACCTGAGAAGACCATTTTGCCCAAACTAGAGTTTTTCAGTTCTATTGGCCTCTCAGGCATTGACATTGCTCGGGCTCTTTGCAGCAACCCAAGTATTTTGAAACGAAATGTAGATAGAAGTCTCAGGCCGTGTTATGATATCATCAAAAGTATACTTGTTTCCGACTTAGAGGTTGCTGATTTCTTTAAGAATTCCTATCAGCTTTTGACGGTCAAATCAGTAAGCAACATTGCTCGGAATGTTTCAGTTCTGAGAAAACTTAAGGTGCCAGAACCTTCAATCTCTTACTATGCTACGTGTCAGCCCTTTGTAATGTCCCTTGAAAATGAGAAGTTTCATGAAGCTGTCAAGAGGGTCATGAGTTTGGGATTCCACCCTTCGTATGCAAGGACATTCATGAAAGCACTATTTGTGATCTCTATAACTGATTCATCAAAATGGGCAGAAAAGATGGATTTCTATAGAAAGTGTGGTTGGAGTGAAGATGACTTTTTGGTGGCATTTAGAAAGAATCCCTTCTTTATGAACATGACAGAGAAGAATATTTCTAGTAAAATGGATTTTATTGTCAACAAAATGGCTTTGGTTCAGCCTGCAGATTTGGCTCATTATCCGACTGTCCTAACTTATAGTTTGGAGAAATGGATAATACCCAGGTGTTCAGTTATTAGAGTTCTCCTATTGAAGGGTTTAATAACAAGGGGAGAATTCAATTTCAACACTTTGATGGGCCTCAATAAGAAGAACTTCTTGGAGAGGTTTGTGATGCAATATCAAGAGCAAGTACCTGAATTACTCAGCATCTTTGAAGGGAAAATGGGTCTTGCGGAACTGGGATTAGGATTTGAGGAAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
mTERF

Protein Analysis

388

Amino Acids

44.13

Weight (kDa)

8.68

Isoelectric Point (pI)

43.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
mTERF PF02536 76 - 285 3.1e-24 mTERF
mTERF PF02536 205 - 353 1.1e-14 mTERF
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000263)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G21150 AT1G21150 AT1G21150
fragaria_vesca FvH4_4g17900 FvH4_6g26110 FvH4_6g33880 FvH4_6g33900 FvH4_6g34011 FvH4_6g34011 FvH4_6g34011 FvH4_6g34011 FvH4_6g34030 FvH4_6g34040 FvH4_6g34070 FvH4_6g34070 FvH4_7g12830
malus_domestica MD09G1189800.v1.1 MD09G1189900.v1.1 MD09G1190000.v1.1 MD14G1088800.v1.1 MD14G1088900.v1.1 MD17G1172900.v1.1
pyrus_communis pycom07g03460 pycom09g10650 pycom14g07860
rosa_chinensis RchiOBHm_Chr1g0351891 RchiOBHm_Chr1g0351901 RchiOBHm_Chr2g0143771 RchiOBHm_Chr2g0143861 RchiOBHm_Chr2g0143881 RchiOBHm_Chr2g0143941 RchiOBHm_Chr2g0143951 RchiOBHm_Chr2g0144081 RchiOBHm_Chr2g0144091 RchiOBHm_Chr2g0144211 RchiOBHm_Chr2g0144231 RchiOBHm_Chr2g0144241 RchiOBHm_Chr2g0144291 RchiOBHm_Chr2g0144301 RchiOBHm_Chr2g0144311 RchiOBHm_Chr2g0144331 RchiOBHm_Chr2g0144341 RchiOBHm_Chr4g0422021 RchiOBHm_Chr4g0422031
rosa_laevigata RLG00000007639 RLG00000020063 RLG00000020071 RLG00000020072 RLG00000020074
rosa_multiflora Rmu_co8214640.1_g000001 Rmu_co8471033.1_g000001 Rmu_sc0000789.1_g000002 Rmu_sc0001321.1_g000001 Rmu_sc0004340.1_g000001 Rmu_sc0004897.1_g000001 Rmu_sc0007105.1_g000005 Rmu_sc0009498.1_g000001 Rmu_sc0009498.1_g000002 Rmu_sc0019136.1_g000001 Rmu_sc0020327.1_g000002 Rmu_sc0020327.1_g000003 Rmu_sc0022905.1_g000001 Rmu_sc0032602.1_g000003 Rmu_sc0032602.1_g000004
rosa_roxburghii Rroxscaffold_2G00101380 Rroxscaffold_2G00101390 Rroxscaffold_2G00101400 Rroxscaffold_2G00101410 Rroxscaffold_2G00101480 Rroxscaffold_2G00101490 Rroxscaffold_4G00303470 Rroxscaffold_5G00364130 Rroxscaffold_5G00364150
rosa_rugosa Rorug01G0222600 Rorug02G0384700 Rorug02G0384800 Rorug02G0385800 Rorug02G0385900 Rorug02G0386000 Rorug02G0386000 Rorug02G0386100 Rorug04G0176700 Rorug04G0176800.1
rosa_samantha Rh1AG236500 Rh1AG236600 Rh1BG206900 Rh1CG221000 Rh1CG221100 Rh2BG444800 Rh2BG444900 Rh2BG446600 Rh2BG446700 Rh2BG447600 Rh2BG448100 Rh2BG448400 Rh2BG448500 Rh2BG448700 Rh2BG448800 Rh2CG423500 Rh2CG423600 Rh2CG424800 Rh2CG424900 Rh2CG425100 Rh2CG425200 Rh2DG455200 Rh2DG455300 Rh2DG456900 Rh2DG457000 Rh2DG457100 Rh2DG457600 Rh2DG457900 Rh2DG458000 Rh2DG458300 Rh2DG458400 Rh4AG236100 Rh4AG236200 Rh4BG239200 Rh4CG250900 Rh4CG251100
rosa_wichuraiana Rw0G000400 Rw0G015990 Rw0G017200 Rw1G020580 Rw2G033310 Rw2G035630 Rw2G035640 Rw2G035790 Rw2G035800 Rw2G035840 Rw2G036160 Rw4G019830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 574
AccI GTMKAC 1 cut(s) 460
AccII CGCG 1 cut(s) 70
AciI CCGC 2 cut(s) 32, 1136
AcsI RAATTY 3 cut(s) 284, 499, 1016
AfaI GTAC 2 cut(s) 192, 1095
AfiI CCNNNNNNNGG 2 cut(s) 186, 994
AflII CTTAAG 1 cut(s) 569
AflIII ACRYGT 1 cut(s) 605
AjnI CCWGG 1 cut(s) 962
AjuI GAANNNNNNNTTGG 4 cut(s) 766, 798, 1043, 1075
AluBI AGCT 3 cut(s) 232, 511, 653
AluI AGCT 3 cut(s) 232, 511, 653
Alw26I GTCTC 1 cut(s) 434
Ama87I CYCGRG 1 cut(s) 378
AoxI GGCC 3 cut(s) 355, 434, 1039
ApeKI GCWGC 2 cut(s) 29, 390
ApoI RAATTY 3 cut(s) 284, 499, 1016
ArsI GACNNNNNNTTYG 2 cut(s) 50, 82
Asp700I GAANNNNTTC 2 cut(s) 824, 1055
AspLEI GCGC 1 cut(s) 29
AspS9I GGNCC 1 cut(s) 1039
AsuC2I CCSGG 1 cut(s) 62
AsuHPI GGTGA 2 cut(s) 29, 147
AvaI CYCGRG 1 cut(s) 378
BanI GGYRCC 1 cut(s) 574
BanII GRGCYC 1 cut(s) 385
BbsI GAAGAC 1 cut(s) 323
BbvI GCAGC 2 cut(s) 16, 402
BccI CCATC 3 cut(s) 104, 754, 1030
BceAI ACGGC 2 cut(s) 40, 421
BciT130I CCWGG 1 cut(s) 964
BcnI CCSGG 1 cut(s) 62
BcoDI GTCTC 1 cut(s) 434
BfaI CTAG 2 cut(s) 335, 858
BfmI CTRYAG 2 cut(s) 769, 903
BfoI RGCGCY 1 cut(s) 30
BfrI CTTAAG 1 cut(s) 569
BglI GCCNNNNNGGC 1 cut(s) 363
BisI GCNGC 2 cut(s) 30, 391
BlsI GCNGC 2 cut(s) 31, 392
Bme1390I CCNGG 2 cut(s) 62, 964
BmeT110I CYCGRG 1 cut(s) 378
BmgT120I GGNCC 1 cut(s) 1039
BmiI GGNNCC 1 cut(s) 576
BmrFI CCNGG 2 cut(s) 62, 964
BmrI ACTGGG 1 cut(s) 1151
BmsI GCATC 2 cut(s) 1065, 1119
BmuI ACTGGG 1 cut(s) 1151
BpiI GAAGAC 1 cut(s) 323
BpuMI CCSGG 1 cut(s) 62
BsaAI YACGTR 1 cut(s) 606
BsaJI CCNNGG 2 cut(s) 180, 962
Bsc4I CCNNNNNNNGG 2 cut(s) 186, 994
Bse1I ACTGG 1 cut(s) 1146
Bse3DI GCAATG 2 cut(s) 372, 537
BseBI CCWGG 1 cut(s) 964
BseDI CCNNGG 2 cut(s) 180, 962
BseLI CCNNNNNNNGG 2 cut(s) 186, 994
BseMI GCAATG 2 cut(s) 372, 537
BseMII CTCAG 5 cut(s) 303, 375, 445, 551, 1120
BseNI ACTGG 1 cut(s) 1146
BseXI GCAGC 2 cut(s) 16, 402
Bsh1236I CGCG 1 cut(s) 70
BshFI GGCC 3 cut(s) 357, 436, 1041
BshNI GGYRCC 1 cut(s) 574
BsiHKCI CYCGRG 1 cut(s) 378
BsiSI CCGG 1 cut(s) 62
BslFI GGGAC 1 cut(s) 610
BslI CCNNNNNNNGG 2 cut(s) 186, 994
BsmAI GTCTC 1 cut(s) 434
BsmFI GGGAC 1 cut(s) 610
BsnI GGCC 3 cut(s) 357, 436, 1041
BsoBI CYCGRG 1 cut(s) 378
Bsp1286I GDGCHC 1 cut(s) 385
Bsp143I GATC 1 cut(s) 723
Bsp68I TCGCGA 1 cut(s) 70
BspACI CCGC 2 cut(s) 32, 1136
BspANI GGCC 3 cut(s) 357, 436, 1041
BspCNI CTCAG 5 cut(s) 304, 374, 444, 552, 1119
BspFNI CGCG 1 cut(s) 70
BspHI TCATGA 3 cut(s) 646, 666, 705
BspLI GGNNCC 1 cut(s) 576
BspMAI CTGCAG 1 cut(s) 907
BspQI GCTCTTC 1 cut(s) 69
BspT107I GGYRCC 1 cut(s) 574
BspTI CTTAAG 1 cut(s) 569
BsrDI GCAATG 2 cut(s) 372, 537
BsrI ACTGG 1 cut(s) 1146
BssECI CCNNGG 2 cut(s) 180, 962
BssMI GATC 1 cut(s) 723
BssNAI GTATAC 1 cut(s) 461
BssT1I CCWWGG 1 cut(s) 180
Bst1107I GTATAC 1 cut(s) 461
Bst2UI CCWGG 1 cut(s) 964
Bst4CI ACNGT 5 cut(s) 17, 45, 124, 520, 928
Bst6I CTCTTC 1 cut(s) 69
BstAFI CTTAAG 1 cut(s) 569
BstBAI YACGTR 1 cut(s) 606
BstC8I GCNNGC 2 cut(s) 81, 903
BstDEI CTNAG 6 cut(s) 312, 361, 431, 475, 560, 1106
BstENI CCTNNNNNAGG 1 cut(s) 992
BstFNI CGCG 1 cut(s) 70
BstH2I RGCGCY 1 cut(s) 30
BstHHI GCGC 1 cut(s) 29
BstKTI GATC 1 cut(s) 726
BstMAI GTCTC 1 cut(s) 434
BstMBI GATC 1 cut(s) 723
BstMWI GCNNNNNNNGC 3 cut(s) 76, 363, 911
BstNI CCWGG 1 cut(s) 964
BstSCI CCNGG 2 cut(s) 60, 962
BstSFI CTRYAG 2 cut(s) 769, 903
BstUI CGCG 1 cut(s) 70
BstV1I GCAGC 2 cut(s) 16, 402
BstV2I GAAGAC 1 cut(s) 323
BstZ17I GTATAC 1 cut(s) 461
BsuRI GGCC 3 cut(s) 357, 436, 1041
BtuMI TCGCGA 1 cut(s) 70
Cac8I GCNNGC 2 cut(s) 81, 903
CciI TCATGA 3 cut(s) 646, 666, 705
CfoI GCGC 1 cut(s) 29
Cfr13I GGNCC 1 cut(s) 1039
Csp6I GTAC 2 cut(s) 191, 1094
CviAII CATG 5 cut(s) 144, 647, 667, 706, 838
CviQI GTAC 2 cut(s) 191, 1094
DdeI CTNAG 6 cut(s) 312, 361, 431, 475, 560, 1106
DpnI GATC 1 cut(s) 725
DpnII GATC 1 cut(s) 723
Eam1104I CTCTTC 1 cut(s) 69
EarI CTCTTC 1 cut(s) 69
Eco130I CCWWGG 1 cut(s) 180
Eco24I GRGCYC 1 cut(s) 385
Eco32I GATATC 1 cut(s) 448
Eco88I CYCGRG 1 cut(s) 378
EcoNI CCTNNNNNAGG 1 cut(s) 992
EcoRI GAATTC 2 cut(s) 499, 1016
EcoRII CCWGG 1 cut(s) 962
EcoRV GATATC 1 cut(s) 448
EcoT14I CCWWGG 1 cut(s) 180
EcoT38I GRGCYC 1 cut(s) 385
ErhI CCWWGG 1 cut(s) 180
FaeI CATG 5 cut(s) 147, 650, 670, 709, 841
FalI AAGNNNNNCTT 6 cut(s) 809, 841, 1040, 1072, 1043, 1075
FaqI GGGAC 1 cut(s) 610
FatI CATG 5 cut(s) 143, 646, 666, 705, 837
FblI GTMKAC 1 cut(s) 460
Fnu4HI GCNGC 2 cut(s) 30, 391
FriOI GRGCYC 1 cut(s) 385
Fsp4HI GCNGC 2 cut(s) 30, 391
FspBI CTAG 2 cut(s) 335, 858
GlaI GCGC 1 cut(s) 28
GluI GCNGC 2 cut(s) 30, 391
HaeII RGCGCY 1 cut(s) 30
HaeIII GGCC 3 cut(s) 357, 436, 1041
HapII CCGG 1 cut(s) 62
HhaI GCGC 1 cut(s) 29
Hin1II CATG 5 cut(s) 147, 650, 670, 709, 841
Hin6I GCGC 1 cut(s) 27
HinP1I GCGC 1 cut(s) 27
HincII GTYRAC 1 cut(s) 880
HindII GTYRAC 1 cut(s) 880
HindIII AAGCTT 1 cut(s) 230
HinfI GANTC 7 cut(s) 65, 91, 218, 249, 678, 737, 820
HpaII CCGG 1 cut(s) 62
HphI GGTGA 2 cut(s) 29, 147
Hpy166II GTNNAC 4 cut(s) 139, 193, 461, 880
Hpy188I TCNGA 6 cut(s) 90, 237, 472, 546, 561, 924
Hpy188III TCNNGA 8 cut(s) 8, 69, 204, 647, 658, 667, 706, 1085
Hpy8I GTNNAC 4 cut(s) 139, 193, 461, 880
HpyAV CCTTC 5 cut(s) 594, 696, 835, 988, 1112
HpyCH4III ACNGT 5 cut(s) 17, 45, 124, 520, 928
HpyCH4IV ACGT 1 cut(s) 605
HpyCH4V TGCA 4 cut(s) 390, 695, 905, 1078
HpyF10VI GCNNNNNNNGC 3 cut(s) 76, 363, 911
HpyF3I CTNAG 6 cut(s) 312, 361, 431, 475, 560, 1106
HpySE526I ACGT 1 cut(s) 605
Hsp92II CATG 5 cut(s) 147, 650, 670, 709, 841
HspAI GCGC 1 cut(s) 27
Kzo9I GATC 1 cut(s) 723
LguI GCTCTTC 1 cut(s) 69
Lsp1109I GCAGC 2 cut(s) 16, 402
LweI GCATC 2 cut(s) 1065, 1119
MaeI CTAG 2 cut(s) 335, 858
MaeII ACGT 1 cut(s) 605
MaeIII GTNAC 1 cut(s) 153
MalI GATC 1 cut(s) 725
MboI GATC 1 cut(s) 723
MboII GAAGA 5 cut(s) 86, 328, 803, 859, 1063
MhlI GDGCHC 1 cut(s) 385
MluCI AATT 6 cut(s) 284, 499, 1016, 1021, 1100, 1162
MlyI GAGTC 3 cut(s) 74, 100, 212
MmeI TCCRAC 3 cut(s) 495, 764, 947
MnlI CCTC 7 cut(s) 180, 368, 472, 654, 1052, 1059, 1150
MroXI GAANNNNTTC 2 cut(s) 824, 1055
MseI TTAA 6 cut(s) 228, 279, 495, 570, 1001, 1165
MslI CAYNNNNRTG 2 cut(s) 745, 1034
MspCI CTTAAG 1 cut(s) 569
MspI CCGG 1 cut(s) 62
MspR9I CCNGG 2 cut(s) 62, 964
MvaI CCWGG 1 cut(s) 964
MvnI CGCG 1 cut(s) 70
MwoI GCNNNNNNNGC 3 cut(s) 76, 363, 911
NciI CCSGG 1 cut(s) 62
NdeII GATC 1 cut(s) 723
NlaIII CATG 5 cut(s) 147, 650, 670, 709, 841
NlaIV GGNNCC 1 cut(s) 576
NmuCI GTSAC 1 cut(s) 153
NruI TCGCGA 1 cut(s) 70
PagI TCATGA 3 cut(s) 646, 666, 705
PciSI GCTCTTC 1 cut(s) 69
PcsI WCGNNNNNNNCGW 1 cut(s) 45
PdmI GAANNNNTTC 2 cut(s) 824, 1055
PfeI GAWTC 4 cut(s) 249, 678, 737, 820
PkrI GCNGC 2 cut(s) 31, 392
PleI GAGTC 3 cut(s) 73, 99, 212
PpsI GAGTC 3 cut(s) 73, 99, 212
Ppu21I YACGTR 1 cut(s) 606
Psp6I CCWGG 1 cut(s) 962
PspGI CCWGG 1 cut(s) 962
PspN4I GGNNCC 1 cut(s) 576
PspPI GGNCC 1 cut(s) 1039
PstI CTGCAG 1 cut(s) 907
RruI TCGCGA 1 cut(s) 70
RsaI GTAC 2 cut(s) 192, 1095
RsaNI GTAC 2 cut(s) 191, 1094
RseI CAYNNNNRTG 2 cut(s) 745, 1034
SapI GCTCTTC 1 cut(s) 69
SaqAI TTAA 6 cut(s) 228, 279, 495, 570, 1001, 1165
SatI GCNGC 2 cut(s) 30, 391
Sau3AI GATC 1 cut(s) 723
Sau96I GGNCC 1 cut(s) 1039
SchI GAGTC 3 cut(s) 74, 100, 212
ScrFI CCNGG 2 cut(s) 62, 964
SduI GDGCHC 1 cut(s) 385
SfaNI GCATC 2 cut(s) 1065, 1119
SfcI CTRYAG 2 cut(s) 769, 903
SmiMI CAYNNNNRTG 2 cut(s) 745, 1034
SmlI CTYRAG 2 cut(s) 6, 569
SmoI CTYRAG 2 cut(s) 6, 569
Sse9I AATT 6 cut(s) 284, 499, 1016, 1021, 1100, 1162
SsiI CCGC 2 cut(s) 32, 1136
SspI AATATT 1 cut(s) 853
SspMI CTAG 2 cut(s) 335, 858
StyD4I CCNGG 2 cut(s) 60, 962
StyI CCWWGG 1 cut(s) 180
TaaI ACNGT 5 cut(s) 17, 45, 124, 520, 928
TaiI ACGT 1 cut(s) 608
TaqI TCGA 1 cut(s) 39
TasI AATT 6 cut(s) 284, 499, 1016, 1021, 1100, 1162
TfiI GAWTC 4 cut(s) 249, 678, 737, 820
Tru1I TTAA 6 cut(s) 228, 279, 495, 570, 1001, 1165
Tru9I TTAA 6 cut(s) 228, 279, 495, 570, 1001, 1165
TseFI GTSAC 1 cut(s) 153
TseI GCWGC 2 cut(s) 29, 390
Tsp45I GTSAC 1 cut(s) 153
TspDTI ATGAA 7 cut(s) 117, 635, 663, 694, 722, 729, 848
Vha464I CTTAAG 1 cut(s) 569
XagI CCTNNNNNAGG 1 cut(s) 992
XapI RAATTY 3 cut(s) 284, 499, 1016
XcmI CCANNNNNNNNNTGG 1 cut(s) 107
XmiI GTMKAC 1 cut(s) 460
XmnI GAANNNNTTC 2 cut(s) 824, 1055
XspI CTAG 2 cut(s) 335, 858
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.