Rorug02G0385800
ERF Family

Wall-associated receptor kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000263
Physical Location & Seq
Reverse (-)
49221613 .. 49225417
3805 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0385800.1

Sequence Viewer

Length: 933 bp
ATGGCATCCCAAATAATTAGAGAATGGCTTGGGATAAACAGTTTCGCACCTGCCACGCAGACTAAGTTGCTCGAATTGCTCGGAAAACTCAACCAAGAGAATGTGAACAGTTTGACAATTCTTGTTATGGGGAAAGGTGGGGTTGGGAAATCATCCACTGTGAACTCACTCATTGGTGAAAGGGCTGTTTCTATTAGTCCGTTTCAGTCTGAAGGAACCAGAGCTGTGATGGTTTCCCGCTCAAGGGCAGGATTTACCCTAAACATCATTGACACCCCTGGGCTCATAGAAGGAGGATATATTAATGACATGGCACTTAATAATATAAAAAGTTTCCTTCTGAACAAGACCATAGATGTTCTACTCTATGTGGATCGATTGGATGCGTATAGAGTGGACAACTTGGATAGGGAGGTGGTCAAAGCCATTACTGATACTTTTGGAAAAGGGATATGGAATAGAGCTTTGGTTGTCCTGACACACGCACAGCTCTCACCACCAGATGGTTTGCCTTACGATGAGTTTGTCTCTAAAAGATCAGAATCTCTTCTAAAAGCTGTTCGTCTTGGTGCTGGGTTAAGAAAACAGGAAGTGCAGGGCTCTACTATTCCTGTTGTTTTGGTTGAGAACAGTGGGAGATGCAACAAGAATGAAAAGGATGAAAAGGTTCTTCCAAATGGAACTGCTTGGATACCCCATGTTGTCCAAACAATCACAGAAGTCATCTTGGGTGGAAGCAAGTCAATTTTTGTTGACCAGAAGTTGATTGAGGGGCCAAACCCCAATGCTAGAGGGAAAATCTTAATTCCTGTAATTTTGGCGCTCCAGTACTTCTTTGTGATTAAACCGATAGAACGTCGGATCAGGACTGACATTGCAAGAGAGAGCAGACCATCCTGGGAGATGCGGGATACCGCTAGTCGCAAGTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
EGF EGF_CA GUB_WAK_bind Pkinase Pkinase_Tyr WAK

Protein Analysis

310

Amino Acids

34.28

Weight (kDa)

9.52

Isoelectric Point (pI)

38.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RsgA_GTPase PF03193 33 - 97 1.5e-06 RsgA GTPase
AIG1 PF04548 38 - 188 1.6e-32 AIG1 family
MMR_HSR1 PF01926 40 - 144 1.7e-10 50S ribosome-binding GTPase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000263)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G21150 AT1G21150 AT1G21150
fragaria_vesca FvH4_4g17900 FvH4_6g26110 FvH4_6g33880 FvH4_6g33900 FvH4_6g34011 FvH4_6g34011 FvH4_6g34011 FvH4_6g34011 FvH4_6g34030 FvH4_6g34040 FvH4_6g34070 FvH4_6g34070 FvH4_7g12830
malus_domestica MD09G1189800.v1.1 MD09G1189900.v1.1 MD09G1190000.v1.1 MD14G1088800.v1.1 MD14G1088900.v1.1 MD17G1172900.v1.1
pyrus_communis pycom07g03460 pycom09g10650 pycom14g07860
rosa_chinensis RchiOBHm_Chr1g0351891 RchiOBHm_Chr1g0351901 RchiOBHm_Chr2g0143771 RchiOBHm_Chr2g0143861 RchiOBHm_Chr2g0143881 RchiOBHm_Chr2g0143941 RchiOBHm_Chr2g0143951 RchiOBHm_Chr2g0144081 RchiOBHm_Chr2g0144091 RchiOBHm_Chr2g0144211 RchiOBHm_Chr2g0144231 RchiOBHm_Chr2g0144241 RchiOBHm_Chr2g0144291 RchiOBHm_Chr2g0144301 RchiOBHm_Chr2g0144311 RchiOBHm_Chr2g0144331 RchiOBHm_Chr2g0144341 RchiOBHm_Chr4g0422021 RchiOBHm_Chr4g0422031
rosa_laevigata RLG00000007639 RLG00000020063 RLG00000020071 RLG00000020072 RLG00000020074
rosa_multiflora Rmu_co8214640.1_g000001 Rmu_co8471033.1_g000001 Rmu_sc0000789.1_g000002 Rmu_sc0001321.1_g000001 Rmu_sc0004340.1_g000001 Rmu_sc0004897.1_g000001 Rmu_sc0007105.1_g000005 Rmu_sc0009498.1_g000001 Rmu_sc0009498.1_g000002 Rmu_sc0019136.1_g000001 Rmu_sc0020327.1_g000002 Rmu_sc0020327.1_g000003 Rmu_sc0022905.1_g000001 Rmu_sc0032602.1_g000003 Rmu_sc0032602.1_g000004
rosa_roxburghii Rroxscaffold_2G00101380 Rroxscaffold_2G00101390 Rroxscaffold_2G00101400 Rroxscaffold_2G00101410 Rroxscaffold_2G00101480 Rroxscaffold_2G00101490 Rroxscaffold_4G00303470 Rroxscaffold_5G00364130 Rroxscaffold_5G00364150
rosa_rugosa Rorug01G0222600 Rorug02G0384700 Rorug02G0384800 Rorug02G0385800 Rorug02G0385900 Rorug02G0386000 Rorug02G0386000 Rorug02G0386100 Rorug04G0176700 Rorug04G0176800.1
rosa_samantha Rh1AG236500 Rh1AG236600 Rh1BG206900 Rh1CG221000 Rh1CG221100 Rh2BG444800 Rh2BG444900 Rh2BG446600 Rh2BG446700 Rh2BG447600 Rh2BG448100 Rh2BG448400 Rh2BG448500 Rh2BG448700 Rh2BG448800 Rh2CG423500 Rh2CG423600 Rh2CG424800 Rh2CG424900 Rh2CG425100 Rh2CG425200 Rh2DG455200 Rh2DG455300 Rh2DG456900 Rh2DG457000 Rh2DG457100 Rh2DG457600 Rh2DG457900 Rh2DG458000 Rh2DG458300 Rh2DG458400 Rh4AG236100 Rh4AG236200 Rh4BG239200 Rh4CG250900 Rh4CG251100
rosa_wichuraiana Rw0G000400 Rw0G015990 Rw0G017200 Rw1G020580 Rw2G033310 Rw2G035630 Rw2G035640 Rw2G035790 Rw2G035800 Rw2G035840 Rw2G036160 Rw4G019830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 58
Acc36I ACCTGC 1 cut(s) 58
AccB7I CCANNNNNTGG 1 cut(s) 503
AccBSI CCGCTC 1 cut(s) 240
AciI CCGC 3 cut(s) 238, 907, 915
AclWI GGATC 2 cut(s) 381, 869
AcuI CTGAAG 1 cut(s) 231
AfaI GTAC 2 cut(s) 830, 929
AfiI CCNNNNNNNGG 3 cut(s) 243, 244, 503
AjnI CCWGG 2 cut(s) 277, 896
AjuI GAANNNNNNNTTGG 2 cut(s) 449, 481
AluBI AGCT 4 cut(s) 224, 464, 490, 557
AluI AGCT 4 cut(s) 224, 464, 490, 557
Alw26I GTCTC 1 cut(s) 532
AlwI GGATC 2 cut(s) 381, 869
AoxI GGCC 1 cut(s) 773
AseI ATTAAT 1 cut(s) 303
Asp700I GAANNNNTTC 2 cut(s) 546, 666
AspLEI GCGC 1 cut(s) 823
AspS9I GGNCC 1 cut(s) 773
AsuHPI GGTGA 2 cut(s) 188, 486
BanII GRGCYC 2 cut(s) 285, 602
BccI CCATC 3 cut(s) 223, 497, 901
BciT130I CCWGG 2 cut(s) 279, 898
BciVI GTATCC 2 cut(s) 684, 904
BcoDI GTCTC 1 cut(s) 532
BfaI CTAG 2 cut(s) 789, 918
BfoI RGCGCY 1 cut(s) 824
BfuAI ACCTGC 1 cut(s) 58
BfuI GTATCC 2 cut(s) 684, 904
BmcAI AGTACT 2 cut(s) 830, 929
Bme1390I CCNGG 2 cut(s) 279, 898
BmgT120I GGNCC 1 cut(s) 773
BmiI GGNNCC 2 cut(s) 217, 774
BmrFI CCNGG 2 cut(s) 279, 898
BmsI GCATC 4 cut(s) 14, 373, 629, 894
BplI GAGNNNNNCTC 2 cut(s) 512, 544
BpmI CTGGAG 1 cut(s) 809
BpuEI CTTGAG 1 cut(s) 226
Bsa29I ATCGAT 1 cut(s) 376
BsaBI GATNNNNATC 1 cut(s) 541
BsaJI CCNNGG 3 cut(s) 277, 278, 897
Bsc4I CCNNNNNNNGG 3 cut(s) 243, 244, 503
Bse1I ACTGG 1 cut(s) 826
Bse3DI GCAATG 1 cut(s) 873
Bse8I GATNNNNATC 1 cut(s) 541
BseBI CCWGG 2 cut(s) 279, 898
BseCI ATCGAT 1 cut(s) 376
BseDI CCNNGG 3 cut(s) 277, 278, 897
BseGI GGATG 5 cut(s) 5, 152, 388, 664, 893
BseJI GATNNNNATC 1 cut(s) 541
BseLI CCNNNNNNNGG 3 cut(s) 243, 244, 503
BseMI GCAATG 1 cut(s) 873
BseNI ACTGG 1 cut(s) 826
BseYI CCCAGC 1 cut(s) 572
BsgI GTGCAG 1 cut(s) 614
BshFI GGCC 1 cut(s) 775
BshVI ATCGAT 1 cut(s) 376
BslI CCNNNNNNNGG 3 cut(s) 243, 244, 503
BsmAI GTCTC 1 cut(s) 532
BsnI GGCC 1 cut(s) 775
Bsp1286I GDGCHC 2 cut(s) 285, 602
Bsp143I GATC 3 cut(s) 373, 536, 861
BspACI CCGC 3 cut(s) 238, 907, 915
BspANI GGCC 1 cut(s) 775
BspDI ATCGAT 1 cut(s) 376
BspLI GGNNCC 2 cut(s) 217, 774
BspMI ACCTGC 1 cut(s) 58
BspPI GGATC 2 cut(s) 381, 869
BsrBI CCGCTC 1 cut(s) 240
BsrDI GCAATG 1 cut(s) 873
BsrI ACTGG 1 cut(s) 826
BssECI CCNNGG 3 cut(s) 277, 278, 897
BssMI GATC 3 cut(s) 373, 536, 861
Bst2UI CCWGG 2 cut(s) 279, 898
Bst4CI ACNGT 4 cut(s) 41, 110, 160, 632
Bst6I CTCTTC 1 cut(s) 552
BstDEI CTNAG 1 cut(s) 63
BstF5I GGATG 5 cut(s) 5, 152, 388, 664, 893
BstH2I RGCGCY 1 cut(s) 824
BstHHI GCGC 1 cut(s) 823
BstKTI GATC 3 cut(s) 376, 539, 864
BstMAI GTCTC 1 cut(s) 532
BstMBI GATC 3 cut(s) 373, 536, 861
BstMWI GCNNNNNNNGC 1 cut(s) 76
BstNI CCWGG 2 cut(s) 279, 898
BstSCI CCNGG 2 cut(s) 277, 896
Bsu15I ATCGAT 1 cut(s) 376
BsuI GTATCC 2 cut(s) 684, 904
BsuRI GGCC 1 cut(s) 775
BsuTUI ATCGAT 1 cut(s) 376
BtsCI GGATG 5 cut(s) 5, 152, 388, 664, 893
BtsIMutI CAGTG 2 cut(s) 156, 637
BveI ACCTGC 1 cut(s) 58
CfoI GCGC 1 cut(s) 823
Cfr13I GGNCC 1 cut(s) 773
ClaI ATCGAT 1 cut(s) 376
Csp6I GTAC 2 cut(s) 829, 928
CviAII CATG 2 cut(s) 310, 698
CviQI GTAC 2 cut(s) 829, 928
DdeI CTNAG 1 cut(s) 63
DpnI GATC 3 cut(s) 375, 538, 863
DpnII GATC 3 cut(s) 373, 536, 861
Eam1104I CTCTTC 1 cut(s) 552
EarI CTCTTC 1 cut(s) 552
Eco24I GRGCYC 2 cut(s) 285, 602
Eco57I CTGAAG 1 cut(s) 231
EcoRII CCWGG 2 cut(s) 277, 896
EcoT38I GRGCYC 2 cut(s) 285, 602
FaeI CATG 2 cut(s) 313, 701
FatI CATG 2 cut(s) 309, 697
FauI CCCGC 2 cut(s) 245, 900
FokI GGATG 4 cut(s) 139, 395, 671, 880
FriOI GRGCYC 2 cut(s) 285, 602
FspBI CTAG 2 cut(s) 789, 918
GlaI GCGC 1 cut(s) 822
GsaI CCCAGC 1 cut(s) 576
GsuI CTGGAG 1 cut(s) 809
HaeII RGCGCY 1 cut(s) 824
HaeIII GGCC 1 cut(s) 775
HhaI GCGC 1 cut(s) 823
Hin1II CATG 2 cut(s) 313, 701
Hin6I GCGC 1 cut(s) 821
HinP1I GCGC 1 cut(s) 821
HincII GTYRAC 1 cut(s) 754
HindII GTYRAC 1 cut(s) 754
HinfI GANTC 1 cut(s) 542
HphI GGTGA 2 cut(s) 188, 486
Hpy166II GTNNAC 4 cut(s) 106, 163, 397, 754
Hpy188I TCNGA 5 cut(s) 83, 211, 342, 541, 861
Hpy188III TCNNGA 2 cut(s) 475, 865
Hpy8I GTNNAC 4 cut(s) 106, 163, 397, 754
Hpy99I CGWCG 1 cut(s) 861
HpyAV CCTTC 3 cut(s) 206, 284, 347
HpyCH4III ACNGT 4 cut(s) 41, 110, 160, 632
HpyCH4IV ACGT 1 cut(s) 856
HpyCH4V TGCA 3 cut(s) 595, 642, 878
HpyF10VI GCNNNNNNNGC 1 cut(s) 76
HpyF3I CTNAG 1 cut(s) 63
HpySE526I ACGT 1 cut(s) 856
Hsp92II CATG 2 cut(s) 313, 701
HspAI GCGC 1 cut(s) 821
Kzo9I GATC 3 cut(s) 373, 536, 861
LmnI GCTCC 1 cut(s) 828
LweI GCATC 4 cut(s) 14, 373, 629, 894
MaeI CTAG 2 cut(s) 789, 918
MaeII ACGT 1 cut(s) 856
MalI GATC 3 cut(s) 375, 538, 863
MbiI CCGCTC 1 cut(s) 240
MboI GATC 3 cut(s) 373, 536, 861
MboII GAAGA 2 cut(s) 539, 662
MhlI GDGCHC 2 cut(s) 285, 602
MluCI AATT 6 cut(s) 15, 74, 117, 744, 804, 813
MmeI TCCRAC 1 cut(s) 839
MnlI CCTC 4 cut(s) 287, 406, 763, 785
MroXI GAANNNNTTC 2 cut(s) 546, 666
MseI TTAA 5 cut(s) 303, 318, 578, 803, 843
MspR9I CCNGG 2 cut(s) 279, 898
MvaI CCWGG 2 cut(s) 279, 898
MwoI GCNNNNNNNGC 1 cut(s) 76
NdeII GATC 3 cut(s) 373, 536, 861
NlaIII CATG 2 cut(s) 313, 701
NlaIV GGNNCC 2 cut(s) 217, 774
PaqCI CACCTGC 1 cut(s) 58
PasI CCCWGGG 1 cut(s) 278
PdmI GAANNNNTTC 2 cut(s) 546, 666
PfeI GAWTC 1 cut(s) 542
PflMI CCANNNNNTGG 1 cut(s) 503
PshBI ATTAAT 1 cut(s) 303
Psp6I CCWGG 2 cut(s) 277, 896
PspFI CCCAGC 1 cut(s) 572
PspGI CCWGG 2 cut(s) 277, 896
PspN4I GGNNCC 2 cut(s) 217, 774
PspPI GGNCC 1 cut(s) 773
RsaI GTAC 2 cut(s) 830, 929
RsaNI GTAC 2 cut(s) 829, 928
SaqAI TTAA 5 cut(s) 303, 318, 578, 803, 843
Sau3AI GATC 3 cut(s) 373, 536, 861
Sau96I GGNCC 1 cut(s) 773
ScaI AGTACT 2 cut(s) 830, 929
ScrFI CCNGG 2 cut(s) 279, 898
SduI GDGCHC 2 cut(s) 285, 602
SetI ASST 9 cut(s) 52, 139, 226, 417, 466, 492, 559, 669, 859
SfaNI GCATC 4 cut(s) 14, 373, 629, 894
SmlI CTYRAG 1 cut(s) 241
SmoI CTYRAG 1 cut(s) 241
Sse9I AATT 6 cut(s) 15, 74, 117, 744, 804, 813
SsiI CCGC 3 cut(s) 238, 907, 915
SspMI CTAG 2 cut(s) 789, 918
StyD4I CCNGG 2 cut(s) 277, 896
TaaI ACNGT 4 cut(s) 41, 110, 160, 632
TaiI ACGT 1 cut(s) 859
TaqI TCGA 2 cut(s) 72, 376
TasI AATT 6 cut(s) 15, 74, 117, 744, 804, 813
TatI WGTACW 2 cut(s) 828, 927
TfiI GAWTC 1 cut(s) 542
Tru1I TTAA 5 cut(s) 303, 318, 578, 803, 843
Tru9I TTAA 5 cut(s) 303, 318, 578, 803, 843
TscAI CASTG 2 cut(s) 163, 637
TspDTI ATGAA 2 cut(s) 666, 675
TspGWI ACGGA 1 cut(s) 189
TspRI CASTG 2 cut(s) 163, 637
Van91I CCANNNNNTGG 1 cut(s) 503
VspI ATTAAT 1 cut(s) 303
XcmI CCANNNNNNNNNTGG 1 cut(s) 226
XmnI GAANNNNTTC 2 cut(s) 546, 666
XspI CTAG 2 cut(s) 789, 918
ZrmI AGTACT 2 cut(s) 830, 929
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.