Rh4CG251100
ERF Family

mTERF

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0000263
Physical Location & Seq
Forward (+)
50103241 .. 50105658
2418 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG251100.1

Sequence Viewer

Length: 1221 bp
ATGTTTGGTTTTTGCTGTAAAAGATTGCAATTACTGCTTCCAAGTTGTAGCACTTCTGTTGATTCAGTGACCCATTTACATTGCTTCCGCAAAGCATCTCACTTTAGCAGTTCATATTCATCCAAATCGTTATTAGGTGGTAAAATAGATAAACCCCAAGAGAAAGATGGCTCTTTTACAGTTTCATACCTTGTAAACTCATGTGGGTTGTCACCAGAAGTTGCTCTCTCTTTGTCCAAGAAGAGGGTACACTTCAAATCCAGAGAGAAACCAGACTCGGTTATTAAGCTTCTGAAACACTATGGATTCAATGACACATCCATATCCCAACTTGTTAAGAAACGCCCAGAAGTGCTAGTGGCCAATCCTGACAAGACCCTCTTTCCCAAACTTGAGTTTTTTAGTTCTATTGGCCTCTCAGGCATTGACATTGCTCAGGTTCTTTGCAGCAACCCAAGTGTTTTGAAACGAAATGTAGATAGAAGTCTCAGTCCTTGTTACGAAATCCTCAGAAGTCTACTTGGTTCCGACATAAAGTTTGCAAGTTTCTTTAAGAACTCCTATCAGCTGTTGACGGTCAAATCAGTAAGCAACATTGCTCGGAATGTTTCAGTTCTCAGAGAACTTAAAGCACCAGAATCTTTAATCTCTTACTATGCAACATGTCAGCCATTGTTAATGTCCCTTGAAAATGAGAAGTTTCACCAAAATGTCAACAAGGTCATGAGTTTGGGATTCCACCCTTCAACATCAACGACGTTCATGAAAGCACTATTTGTGATCTCCACTACGGATTCATCAAAATGGGCACAAAAGATGGATTTCTATAAAAAGTGTGGTTGGACTGAAGATGACTTTTTGGTGGCATTTAGTAAGAATCCCCTCTTTATGAACATGACAGAGAAGAATATTTCTAGTAAAATGGATTTTATTGTCAACAAAATGGCTTTGGTTCAGCCTGCAGATTTGGCTCATTATCCGACTGTCCTAACTTATAGTTTGGAGAATCGGATAATACCTAGGGCTTCAGTTATTAGAGCTCTCCTGTTGAAAGGCTTAATAACAAGGGGAGATTTTTCTTTCAACAGCTTGATGATATACAATAATAAGAAGTTCTTGGATAAGTTTGTGGTCCCATATCAACCGCAAGTACCTGAATTGTTGAGCATCTTTGCAGGGGAAATGGGTCTGGGTCTTGTGGAACTGGGCATTAGGGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
mTERF

Protein Analysis

406

Amino Acids

45.63

Weight (kDa)

9.44

Isoelectric Point (pI)

41.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
mTERF PF02536 95 - 304 9.4e-24 mTERF
mTERF PF02536 224 - 373 1.9e-16 mTERF
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000263)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G21150 AT1G21150 AT1G21150
fragaria_vesca FvH4_4g17900 FvH4_6g26110 FvH4_6g33880 FvH4_6g33900 FvH4_6g34011 FvH4_6g34011 FvH4_6g34011 FvH4_6g34011 FvH4_6g34030 FvH4_6g34040 FvH4_6g34070 FvH4_6g34070 FvH4_7g12830
malus_domestica MD09G1189800.v1.1 MD09G1189900.v1.1 MD09G1190000.v1.1 MD14G1088800.v1.1 MD14G1088900.v1.1 MD17G1172900.v1.1
pyrus_communis pycom07g03460 pycom09g10650 pycom14g07860
rosa_chinensis RchiOBHm_Chr1g0351891 RchiOBHm_Chr1g0351901 RchiOBHm_Chr2g0143771 RchiOBHm_Chr2g0143861 RchiOBHm_Chr2g0143881 RchiOBHm_Chr2g0143941 RchiOBHm_Chr2g0143951 RchiOBHm_Chr2g0144081 RchiOBHm_Chr2g0144091 RchiOBHm_Chr2g0144211 RchiOBHm_Chr2g0144231 RchiOBHm_Chr2g0144241 RchiOBHm_Chr2g0144291 RchiOBHm_Chr2g0144301 RchiOBHm_Chr2g0144311 RchiOBHm_Chr2g0144331 RchiOBHm_Chr2g0144341 RchiOBHm_Chr4g0422021 RchiOBHm_Chr4g0422031
rosa_laevigata RLG00000007639 RLG00000020063 RLG00000020071 RLG00000020072 RLG00000020074
rosa_multiflora Rmu_co8214640.1_g000001 Rmu_co8471033.1_g000001 Rmu_sc0000789.1_g000002 Rmu_sc0001321.1_g000001 Rmu_sc0004340.1_g000001 Rmu_sc0004897.1_g000001 Rmu_sc0007105.1_g000005 Rmu_sc0009498.1_g000001 Rmu_sc0009498.1_g000002 Rmu_sc0019136.1_g000001 Rmu_sc0020327.1_g000002 Rmu_sc0020327.1_g000003 Rmu_sc0022905.1_g000001 Rmu_sc0032602.1_g000003 Rmu_sc0032602.1_g000004
rosa_roxburghii Rroxscaffold_2G00101380 Rroxscaffold_2G00101390 Rroxscaffold_2G00101400 Rroxscaffold_2G00101410 Rroxscaffold_2G00101480 Rroxscaffold_2G00101490 Rroxscaffold_4G00303470 Rroxscaffold_5G00364130 Rroxscaffold_5G00364150
rosa_rugosa Rorug01G0222600 Rorug02G0384700 Rorug02G0384800 Rorug02G0385800 Rorug02G0385900 Rorug02G0386000 Rorug02G0386000 Rorug02G0386100 Rorug04G0176700 Rorug04G0176800.1
rosa_samantha Rh1AG236500 Rh1AG236600 Rh1BG206900 Rh1CG221000 Rh1CG221100 Rh2BG444800 Rh2BG444900 Rh2BG446600 Rh2BG446700 Rh2BG447600 Rh2BG448100 Rh2BG448400 Rh2BG448500 Rh2BG448700 Rh2BG448800 Rh2CG423500 Rh2CG423600 Rh2CG424800 Rh2CG424900 Rh2CG425100 Rh2CG425200 Rh2DG455200 Rh2DG455300 Rh2DG456900 Rh2DG457000 Rh2DG457100 Rh2DG457600 Rh2DG457900 Rh2DG458000 Rh2DG458300 Rh2DG458400 Rh4AG236100 Rh4AG236200 Rh4BG239200 Rh4CG250900 Rh4CG251100
rosa_wichuraiana Rw0G000400 Rw0G015990 Rw0G017200 Rw1G020580 Rw2G033310 Rw2G035630 Rw2G035640 Rw2G035790 Rw2G035800 Rw2G035840 Rw2G036160 Rw4G019830

Restriction Enzyme Sites

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Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 517
AciI CCGC 2 cut(s) 88, 1145
AcoI YGGCCR 1 cut(s) 360
AcuI CTGAAG 2 cut(s) 867, 1011
AfaI GTAC 2 cut(s) 249, 1152
AfiI CCNNNNNNNGG 1 cut(s) 243
AflIII ACRYGT 1 cut(s) 662
AgsI TTSAA 7 cut(s) 256, 310, 466, 689, 747, 1051, 1084
AluBI AGCT 4 cut(s) 289, 568, 1040, 1089
AluI AGCT 4 cut(s) 289, 568, 1040, 1089
Alw21I GWGCWC 1 cut(s) 1042
Alw26I GTCTC 1 cut(s) 491
AoxI GGCC 2 cut(s) 360, 412
ApeKI GCWGC 1 cut(s) 447
ArsI GACNNNNNNTTYG 2 cut(s) 521, 553
AspA2I CCTAGG 1 cut(s) 1019
AspS9I GGNCC 1 cut(s) 1132
AsuHPI GGTGA 2 cut(s) 204, 695
AvaII GGWCC 1 cut(s) 1132
AvrII CCTAGG 1 cut(s) 1019
BaeGI GKGCMC 1 cut(s) 811
BalI TGGCCA 1 cut(s) 362
BanII GRGCYC 1 cut(s) 1042
Bbv12I GWGCWC 1 cut(s) 1042
BbvI GCAGC 1 cut(s) 459
BccI CCATC 2 cut(s) 161, 811
BcoDI GTCTC 1 cut(s) 491
BfaI CTAG 3 cut(s) 356, 915, 1020
BfmI CTRYAG 1 cut(s) 960
BglI GCCNNNNNGGC 1 cut(s) 420
BisI GCNGC 1 cut(s) 448
BlnI CCTAGG 1 cut(s) 1019
BlsI GCNGC 1 cut(s) 449
Bme18I GGWCC 1 cut(s) 1132
BmgT120I GGNCC 1 cut(s) 1132
BmiI GGNNCC 2 cut(s) 526, 1134
BmrI ACTGGG 1 cut(s) 1214
BmsI GCATC 2 cut(s) 104, 1176
BmuI ACTGGG 1 cut(s) 1214
Bpu10I CCTNAGC 1 cut(s) 435
BpuEI CTTGAG 1 cut(s) 413
BsaJI CCNNGG 1 cut(s) 1019
Bsc4I CCNNNNNNNGG 1 cut(s) 243
Bse1I ACTGG 1 cut(s) 1209
Bse3DI GCAATG 3 cut(s) 79, 429, 594
BseDI CCNNGG 1 cut(s) 1019
BseGI GGATG 2 cut(s) 119, 317
BseLI CCNNNNNNNGG 1 cut(s) 243
BseMI GCAATG 3 cut(s) 79, 429, 594
BseMII CTCAG 5 cut(s) 432, 449, 502, 523, 631
BseNI ACTGG 1 cut(s) 1209
BseSI GKGCMC 1 cut(s) 811
BseXI GCAGC 1 cut(s) 459
BshFI GGCC 2 cut(s) 362, 414
BsiHKAI GWGCWC 1 cut(s) 1042
BslFI GGGAC 2 cut(s) 667, 1118
BslI CCNNNNNNNGG 1 cut(s) 243
BsmAI GTCTC 1 cut(s) 491
BsmFI GGGAC 2 cut(s) 667, 1118
BsnI GGCC 2 cut(s) 362, 414
Bsp1286I GDGCHC 2 cut(s) 811, 1042
Bsp143I GATC 1 cut(s) 780
BspACI CCGC 2 cut(s) 88, 1145
BspANI GGCC 2 cut(s) 362, 414
BspCNI CTCAG 5 cut(s) 431, 448, 501, 522, 630
BspHI TCATGA 2 cut(s) 723, 762
BspLI GGNNCC 2 cut(s) 526, 1134
BspMAI CTGCAG 1 cut(s) 964
BsrDI GCAATG 3 cut(s) 79, 429, 594
BsrI ACTGG 1 cut(s) 1209
BssECI CCNNGG 1 cut(s) 1019
BssMI GATC 1 cut(s) 780
BssT1I CCWWGG 1 cut(s) 1019
Bst4CI ACNGT 3 cut(s) 181, 577, 985
Bst6I CTCTTC 1 cut(s) 236
BstAPI GCANNNNNTGC 1 cut(s) 34
BstC8I GCNNGC 1 cut(s) 960
BstDEI CTNAG 5 cut(s) 418, 435, 488, 509, 617
BstF5I GGATG 2 cut(s) 119, 317
BstKTI GATC 1 cut(s) 783
BstMAI GTCTC 1 cut(s) 491
BstMBI GATC 1 cut(s) 780
BstMWI GCNNNNNNNGC 3 cut(s) 34, 420, 968
BstNSI RCATGY 1 cut(s) 666
BstSFI CTRYAG 1 cut(s) 960
BstSLI GKGCMC 1 cut(s) 811
BstV1I GCAGC 1 cut(s) 459
BsuRI GGCC 2 cut(s) 362, 414
BtsCI GGATG 2 cut(s) 119, 317
BtsIMutI CAGTG 1 cut(s) 72
Cac8I GCNNGC 1 cut(s) 960
CciI TCATGA 2 cut(s) 723, 762
Cfr13I GGNCC 1 cut(s) 1132
Csp6I GTAC 2 cut(s) 248, 1151
CviAII CATG 5 cut(s) 201, 663, 724, 763, 895
CviQI GTAC 2 cut(s) 248, 1151
DdeI CTNAG 5 cut(s) 418, 435, 488, 509, 617
DpnI GATC 1 cut(s) 782
DpnII GATC 1 cut(s) 780
EaeI YGGCCR 1 cut(s) 360
Eam1104I CTCTTC 1 cut(s) 236
EarI CTCTTC 1 cut(s) 236
Ecl136II GAGCTC 1 cut(s) 1040
Eco130I CCWWGG 1 cut(s) 1019
Eco24I GRGCYC 1 cut(s) 1042
Eco47I GGWCC 1 cut(s) 1132
Eco53kI GAGCTC 1 cut(s) 1040
Eco57I CTGAAG 2 cut(s) 867, 1011
EcoICRI GAGCTC 1 cut(s) 1040
EcoT14I CCWWGG 1 cut(s) 1019
EcoT38I GRGCYC 1 cut(s) 1042
ErhI CCWWGG 1 cut(s) 1019
FaeI CATG 5 cut(s) 204, 666, 727, 766, 898
FalI AAGNNNNNCTT 4 cut(s) 365, 397, 1100, 1132
FaqI GGGAC 2 cut(s) 667, 1118
FatI CATG 5 cut(s) 200, 662, 723, 762, 894
FblI GTMKAC 1 cut(s) 517
Fnu4HI GCNGC 1 cut(s) 448
FokI GGATG 2 cut(s) 106, 304
FriOI GRGCYC 1 cut(s) 1042
Fsp4HI GCNGC 1 cut(s) 448
FspBI CTAG 3 cut(s) 356, 915, 1020
GluI GCNGC 1 cut(s) 448
HaeIII GGCC 2 cut(s) 362, 414
Hin1II CATG 5 cut(s) 204, 666, 727, 766, 898
HincII GTYRAC 3 cut(s) 573, 715, 937
HindII GTYRAC 3 cut(s) 573, 715, 937
HindIII AAGCTT 1 cut(s) 287
HinfI GANTC 8 cut(s) 62, 275, 306, 638, 735, 794, 877, 1006
HphI GGTGA 2 cut(s) 204, 695
Hpy166II GTNNAC 6 cut(s) 196, 250, 518, 573, 715, 937
Hpy188I TCNGA 7 cut(s) 294, 512, 529, 603, 620, 981, 1011
Hpy188III TCNNGA 4 cut(s) 261, 368, 724, 763
Hpy8I GTNNAC 6 cut(s) 196, 250, 518, 573, 715, 937
Hpy99I CGWCG 1 cut(s) 760
HpyAV CCTTC 1 cut(s) 753
HpyCH4III ACNGT 3 cut(s) 181, 577, 985
HpyCH4IV ACGT 1 cut(s) 758
HpyCH4V TGCA 6 cut(s) 28, 447, 542, 659, 962, 1175
HpyF10VI GCNNNNNNNGC 3 cut(s) 34, 420, 968
HpyF3I CTNAG 5 cut(s) 418, 435, 488, 509, 617
HpySE526I ACGT 1 cut(s) 758
Hsp92II CATG 5 cut(s) 204, 666, 727, 766, 898
Kzo9I GATC 1 cut(s) 780
Lsp1109I GCAGC 1 cut(s) 459
LweI GCATC 2 cut(s) 104, 1176
MaeI CTAG 3 cut(s) 356, 915, 1020
MaeII ACGT 1 cut(s) 758
MaeIII GTNAC 3 cut(s) 67, 210, 497
MalI GATC 1 cut(s) 782
MboI GATC 1 cut(s) 780
MboII GAAGA 3 cut(s) 253, 860, 916
MhlI GDGCHC 2 cut(s) 811, 1042
MlsI TGGCCA 1 cut(s) 362
MluCI AATT 2 cut(s) 29, 1157
MluNI TGGCCA 1 cut(s) 362
MlyI GAGTC 1 cut(s) 269
MmeI TCCRAC 3 cut(s) 552, 821, 1004
MnlI CCTC 5 cut(s) 237, 389, 425, 518, 893
Mox20I TGGCCA 1 cut(s) 362
MscI TGGCCA 1 cut(s) 362
MseI TTAA 7 cut(s) 285, 336, 552, 627, 644, 677, 1058
MslI CAYNNNNRTG 2 cut(s) 708, 802
Msp20I TGGCCA 1 cut(s) 362
MspA1I CMGCKG 1 cut(s) 568
MwoI GCNNNNNNNGC 3 cut(s) 34, 420, 968
NdeII GATC 1 cut(s) 780
NlaIII CATG 5 cut(s) 204, 666, 727, 766, 898
NlaIV GGNNCC 2 cut(s) 526, 1134
NmuCI GTSAC 2 cut(s) 67, 210
NspI RCATGY 1 cut(s) 666
PagI TCATGA 2 cut(s) 723, 762
PciI ACATGT 1 cut(s) 662
PfeI GAWTC 7 cut(s) 62, 306, 638, 735, 794, 877, 1006
PkrI GCNGC 1 cut(s) 449
PleI GAGTC 1 cut(s) 269
PpsI GAGTC 1 cut(s) 269
PscI ACATGT 1 cut(s) 662
Psp124BI GAGCTC 1 cut(s) 1042
PspN4I GGNNCC 2 cut(s) 526, 1134
PspPI GGNCC 1 cut(s) 1132
PstI CTGCAG 1 cut(s) 964
PvuII CAGCTG 1 cut(s) 568
RsaI GTAC 2 cut(s) 249, 1152
RsaNI GTAC 2 cut(s) 248, 1151
RseI CAYNNNNRTG 2 cut(s) 708, 802
SacI GAGCTC 1 cut(s) 1042
SaqAI TTAA 7 cut(s) 285, 336, 552, 627, 644, 677, 1058
SatI GCNGC 1 cut(s) 448
Sau3AI GATC 1 cut(s) 780
Sau96I GGNCC 1 cut(s) 1132
SchI GAGTC 1 cut(s) 269
SduI GDGCHC 2 cut(s) 811, 1042
SfaNI GCATC 2 cut(s) 104, 1176
SfcI CTRYAG 1 cut(s) 960
SinI GGWCC 1 cut(s) 1132
SmiMI CAYNNNNRTG 2 cut(s) 708, 802
SmlI CTYRAG 1 cut(s) 392
SmoI CTYRAG 1 cut(s) 392
Sse9I AATT 2 cut(s) 29, 1157
SsiI CCGC 2 cut(s) 88, 1145
SspI AATATT 1 cut(s) 910
SspMI CTAG 3 cut(s) 356, 915, 1020
SstI GAGCTC 1 cut(s) 1042
StyI CCWWGG 1 cut(s) 1019
TaaI ACNGT 3 cut(s) 181, 577, 985
TaiI ACGT 1 cut(s) 761
TasI AATT 2 cut(s) 29, 1157
TfiI GAWTC 7 cut(s) 62, 306, 638, 735, 794, 877, 1006
Tru1I TTAA 7 cut(s) 285, 336, 552, 627, 644, 677, 1058
Tru9I TTAA 7 cut(s) 285, 336, 552, 627, 644, 677, 1058
TscAI CASTG 1 cut(s) 72
TseFI GTSAC 2 cut(s) 67, 210
TseI GCWGC 1 cut(s) 447
Tsp45I GTSAC 2 cut(s) 67, 210
TspDTI ATGAA 7 cut(s) 102, 108, 174, 751, 779, 786, 905
TspGWI ACGGA 1 cut(s) 806
TspRI CASTG 1 cut(s) 72
VpaK11BI GGWCC 1 cut(s) 1132
XceI RCATGY 1 cut(s) 666
XcmI CCANNNNNNNNNTGG 1 cut(s) 164
XmaJI CCTAGG 1 cut(s) 1019
XmiI GTMKAC 1 cut(s) 517
XspI CTAG 3 cut(s) 356, 915, 1020
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.