Rw2G035640
ERF Family

mTERF

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0000263
Physical Location & Seq
Reverse (-)
58683491 .. 58685317
1827 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G035640.1

Sequence Viewer

Length: 1221 bp
ATGTTTGGTTTTTGCTGTAGAAGATTGCAATTACTATTTCCCAGTTGTAGCATTGCTGTTGATTATTCAGTCACCCATGTTCAAAAGGCACCTCATTTTACAAGATTGTATTCATCAAAATCATTATTAAGGGCCCAAGATAAAAAAGATTGCTCTTTTACAGTTTCATACCTTATAAATTCATGTGGGTTATCCCTAGAACTTGCCCTCTCTTTGTCCAAGAGGCATAGGGTACGTTTTGAATCCCCAGAAAAACCAGACGCAGTTGTTAAGCTTTTCAAGGACTATGGATTCAGCAATGCCCACATCTCTGAAATTGTCAAGAAACTCCCAGAGCTGCTCTTAGTCAGTGAGAAGACCCTTTTGCCTAAAATTGAGTTCTTGGGTTCCATTGGAATTACAGGCATTCCCCTGGCTGAGACCCTTTGCGGCAACCCAACTGTGTTGAAAATGAGCTTAGAGAATTGTATTAGACCTTGTTGTGATATCATCAAAACTCTAGGTATCCCTTATGGAAAGGTCCCTCGTTTCATTAAGAGATCGCAGTGGTTGTTTAAGGTCAAAGTACTGAGCAATGTTGCTCGCAATGTTTCAGTACTGAGGTCACTAAAAGTGCCAGAATCCACAATCGATTTGTGTAGGCCCCACAATCTTGTTCCAGTGTCCACTGACGCCGATGAGTTTAATGAAAATGTCAACAAGGTCATCAGTATGGGATTTCCTCCTTCAAGCTGTACATTTATGAAAGCACTGTATGTGATTTCTATGATGGATGAATCAAAATTGGCACAGAGGAAGGAGTTTTATCGGAAGTTTGGTTGGACTGAAGATAATATATTGTTGGCATTTAGAAAGAATCCCATTTTTATGTCCATTTCTGAGAAGAATTTTTTGAGTAAAATGGATTTTCTTGTGAACAAAGTGGGTTTACAGCCGGCTGATGTGGCTGGATATCCCAGTGTTCTAACTAATAGTTTGGAGAAATGGATCATACCTAGGTGTTCAGTTATCAGAGTTCTGCTGTTGAAGGGCTTAATACGGAAGGGACAATTTTCTTTACTTGGTACCGCGTTAATGGGCAATAAAGACCAGTTCTTGCATAGATTTGTGAACAAGTATGAAGAGCAAGTACCCGAATTATTGAGCATTTTTCAAGGGAAAATTGGTCTTGCAGAACTGGGCTTAGGGTTTGAGGAAAGAGATGGAGTGAAACAAATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
mTERF

Protein Analysis

406

Amino Acids

45.88

Weight (kDa)

9.38

Isoelectric Point (pI)

41.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
mTERF PF02536 26 - 180 1.4e-11 mTERF
mTERF PF02536 91 - 209 5.1e-13 mTERF
mTERF PF02536 254 - 365 3.2e-13 mTERF
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000263)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G21150 AT1G21150 AT1G21150
fragaria_vesca FvH4_4g17900 FvH4_6g26110 FvH4_6g33880 FvH4_6g33900 FvH4_6g34011 FvH4_6g34011 FvH4_6g34011 FvH4_6g34011 FvH4_6g34030 FvH4_6g34040 FvH4_6g34070 FvH4_6g34070 FvH4_7g12830
malus_domestica MD09G1189800.v1.1 MD09G1189900.v1.1 MD09G1190000.v1.1 MD14G1088800.v1.1 MD14G1088900.v1.1 MD17G1172900.v1.1
pyrus_communis pycom07g03460 pycom09g10650 pycom14g07860
rosa_chinensis RchiOBHm_Chr1g0351891 RchiOBHm_Chr1g0351901 RchiOBHm_Chr2g0143771 RchiOBHm_Chr2g0143861 RchiOBHm_Chr2g0143881 RchiOBHm_Chr2g0143941 RchiOBHm_Chr2g0143951 RchiOBHm_Chr2g0144081 RchiOBHm_Chr2g0144091 RchiOBHm_Chr2g0144211 RchiOBHm_Chr2g0144231 RchiOBHm_Chr2g0144241 RchiOBHm_Chr2g0144291 RchiOBHm_Chr2g0144301 RchiOBHm_Chr2g0144311 RchiOBHm_Chr2g0144331 RchiOBHm_Chr2g0144341 RchiOBHm_Chr4g0422021 RchiOBHm_Chr4g0422031
rosa_laevigata RLG00000007639 RLG00000020063 RLG00000020071 RLG00000020072 RLG00000020074
rosa_multiflora Rmu_co8214640.1_g000001 Rmu_co8471033.1_g000001 Rmu_sc0000789.1_g000002 Rmu_sc0001321.1_g000001 Rmu_sc0004340.1_g000001 Rmu_sc0004897.1_g000001 Rmu_sc0007105.1_g000005 Rmu_sc0009498.1_g000001 Rmu_sc0009498.1_g000002 Rmu_sc0019136.1_g000001 Rmu_sc0020327.1_g000002 Rmu_sc0020327.1_g000003 Rmu_sc0022905.1_g000001 Rmu_sc0032602.1_g000003 Rmu_sc0032602.1_g000004
rosa_roxburghii Rroxscaffold_2G00101380 Rroxscaffold_2G00101390 Rroxscaffold_2G00101400 Rroxscaffold_2G00101410 Rroxscaffold_2G00101480 Rroxscaffold_2G00101490 Rroxscaffold_4G00303470 Rroxscaffold_5G00364130 Rroxscaffold_5G00364150
rosa_rugosa Rorug01G0222600 Rorug02G0384700 Rorug02G0384800 Rorug02G0385800 Rorug02G0385900 Rorug02G0386000 Rorug02G0386000 Rorug02G0386100 Rorug04G0176700 Rorug04G0176800.1
rosa_samantha Rh1AG236500 Rh1AG236600 Rh1BG206900 Rh1CG221000 Rh1CG221100 Rh2BG444800 Rh2BG444900 Rh2BG446600 Rh2BG446700 Rh2BG447600 Rh2BG448100 Rh2BG448400 Rh2BG448500 Rh2BG448700 Rh2BG448800 Rh2CG423500 Rh2CG423600 Rh2CG424800 Rh2CG424900 Rh2CG425100 Rh2CG425200 Rh2DG455200 Rh2DG455300 Rh2DG456900 Rh2DG457000 Rh2DG457100 Rh2DG457600 Rh2DG457900 Rh2DG458000 Rh2DG458300 Rh2DG458400 Rh4AG236100 Rh4AG236200 Rh4BG239200 Rh4CG250900 Rh4CG251100
rosa_wichuraiana Rw0G000400 Rw0G015990 Rw0G017200 Rw1G020580 Rw2G033310 Rw2G035630 Rw2G035640 Rw2G035790 Rw2G035800 Rw2G035840 Rw2G036160 Rw4G019830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 176
Acc65I GGTACC 1 cut(s) 1064
AccB1I GGYRCC 2 cut(s) 88, 1064
AccII CGCG 1 cut(s) 1070
AciI CCGC 2 cut(s) 429, 1068
AclWI GGATC 1 cut(s) 995
AcsI RAATTY 2 cut(s) 178, 886
AcuI CTGAAG 1 cut(s) 846
AcyI GRCGYC 1 cut(s) 672
AfaI GTAC 6 cut(s) 234, 567, 597, 736, 1066, 1131
AgsI TTSAA 7 cut(s) 83, 242, 280, 448, 729, 1027, 1154
AjnI CCWGG 1 cut(s) 411
AluBI AGCT 4 cut(s) 274, 337, 456, 732
AluI AGCT 4 cut(s) 274, 337, 456, 732
Alw26I GTCTC 1 cut(s) 413
AlwI GGATC 1 cut(s) 995
AoxI GGCC 2 cut(s) 132, 641
ApaI GGGCCC 1 cut(s) 136
ApeKI GCWGC 1 cut(s) 337
ApoI RAATTY 2 cut(s) 178, 886
Asp718I GGTACC 1 cut(s) 1064
AspA2I CCTAGG 1 cut(s) 995
AspS9I GGNCC 4 cut(s) 132, 133, 520, 642
AsuHPI GGTGA 1 cut(s) 64
AvaII GGWCC 1 cut(s) 520
AvrII CCTAGG 1 cut(s) 995
BaeGI GKGCMC 1 cut(s) 136
BanI GGYRCC 2 cut(s) 88, 1064
BanII GRGCYC 1 cut(s) 136
BarI GAAGNNNNNNTAC 2 cut(s) 1113, 1145
BbsI GAAGAC 1 cut(s) 362
BbvI GCAGC 1 cut(s) 324
BccI CCATC 2 cut(s) 763, 1196
BciT130I CCWGG 1 cut(s) 413
BciVI GTATCC 1 cut(s) 515
BcoDI GTCTC 1 cut(s) 413
BfaI CTAG 3 cut(s) 197, 500, 996
BfmI CTRYAG 1 cut(s) 16
BfuI GTATCC 1 cut(s) 515
BisI GCNGC 2 cut(s) 338, 430
BlnI CCTAGG 1 cut(s) 995
BlsI GCNGC 2 cut(s) 339, 431
BmcAI AGTACT 2 cut(s) 567, 597
Bme1390I CCNGG 1 cut(s) 413
Bme18I GGWCC 1 cut(s) 520
BmgT120I GGNCC 4 cut(s) 132, 133, 520, 642
BmiI GGNNCC 6 cut(s) 90, 134, 388, 522, 644, 1066
BmrFI CCNGG 1 cut(s) 413
BmrI ACTGGG 3 cut(s) 36, 951, 1187
BmuI ACTGGG 3 cut(s) 36, 951, 1187
BpiI GAAGAC 1 cut(s) 362
Bpu10I CCTNAGC 1 cut(s) 1183
Bsa29I ATCGAT 1 cut(s) 630
BsaHI GRCGYC 1 cut(s) 672
BsaI GGTCTC 1 cut(s) 413
BsaJI CCNNGG 2 cut(s) 411, 995
Bse118I RCCGGY 1 cut(s) 934
Bse1I ACTGG 5 cut(s) 42, 659, 957, 1090, 1182
Bse3DI GCAATG 4 cut(s) 51, 304, 580, 592
BseBI CCWGG 1 cut(s) 413
BseCI ATCGAT 1 cut(s) 630
BseDI CCNNGG 2 cut(s) 411, 995
BseGI GGATG 1 cut(s) 778
BseMI GCAATG 4 cut(s) 51, 304, 580, 592
BseMII CTCAG 4 cut(s) 408, 560, 590, 870
BseNI ACTGG 5 cut(s) 42, 659, 957, 1090, 1182
BseSI GKGCMC 1 cut(s) 136
BseXI GCAGC 1 cut(s) 324
Bsh1236I CGCG 1 cut(s) 1070
BshFI GGCC 2 cut(s) 134, 643
BshNI GGYRCC 2 cut(s) 88, 1064
BshVI ATCGAT 1 cut(s) 630
BsiSI CCGG 1 cut(s) 935
BslFI GGGAC 2 cut(s) 506, 1059
BsmAI GTCTC 1 cut(s) 413
BsmFI GGGAC 2 cut(s) 506, 1059
BsmI GAATGC 1 cut(s) 405
BsnI GGCC 2 cut(s) 134, 643
Bso31I GGTCTC 1 cut(s) 413
Bsp120I GGGCCC 1 cut(s) 132
Bsp1286I GDGCHC 1 cut(s) 136
Bsp1407I TGTACA 1 cut(s) 734
Bsp143I GATC 2 cut(s) 539, 987
BspACI CCGC 2 cut(s) 429, 1068
BspANI GGCC 2 cut(s) 134, 643
BspCNI CTCAG 4 cut(s) 409, 561, 591, 871
BspDI ATCGAT 1 cut(s) 630
BspFNI CGCG 1 cut(s) 1070
BspLI GGNNCC 6 cut(s) 90, 134, 388, 522, 644, 1066
BspPI GGATC 1 cut(s) 995
BspQI GCTCTTC 1 cut(s) 1116
BspT107I GGYRCC 2 cut(s) 88, 1064
BspTNI GGTCTC 1 cut(s) 413
BsrDI GCAATG 4 cut(s) 51, 304, 580, 592
BsrFI RCCGGY 1 cut(s) 934
BsrGI TGTACA 1 cut(s) 734
BsrI ACTGG 5 cut(s) 42, 659, 957, 1090, 1182
BssAI RCCGGY 1 cut(s) 934
BssECI CCNNGG 2 cut(s) 411, 995
BssMI GATC 2 cut(s) 539, 987
BssNI GRCGYC 1 cut(s) 672
BssT1I CCWWGG 1 cut(s) 995
Bst2UI CCWGG 1 cut(s) 413
Bst4CI ACNGT 3 cut(s) 163, 442, 753
Bst6I CTCTTC 1 cut(s) 1116
BstACI GRCGYC 1 cut(s) 672
BstAUI TGTACA 1 cut(s) 734
BstC8I GCNNGC 2 cut(s) 583, 936
BstDEI CTNAG 7 cut(s) 343, 417, 457, 569, 599, 879, 1183
BstF5I GGATG 1 cut(s) 778
BstFNI CGCG 1 cut(s) 1070
BstKTI GATC 2 cut(s) 542, 990
BstMAI GTCTC 1 cut(s) 413
BstMBI GATC 2 cut(s) 539, 987
BstMWI GCNNNNNNNGC 1 cut(s) 944
BstNI CCWGG 1 cut(s) 413
BstSCI CCNGG 1 cut(s) 411
BstSFI CTRYAG 1 cut(s) 16
BstSLI GKGCMC 1 cut(s) 136
BstUI CGCG 1 cut(s) 1070
BstV1I GCAGC 1 cut(s) 324
BstV2I GAAGAC 1 cut(s) 362
Bsu15I ATCGAT 1 cut(s) 630
BsuI GTATCC 1 cut(s) 515
BsuRI GGCC 2 cut(s) 134, 643
BsuTUI ATCGAT 1 cut(s) 630
BtsCI GGATG 1 cut(s) 778
BtsI GCAGTG 1 cut(s) 551
BtsIMutI CAGTG 6 cut(s) 355, 551, 666, 666, 749, 964
Cac8I GCNNGC 2 cut(s) 583, 936
Cfr10I RCCGGY 1 cut(s) 934
Cfr13I GGNCC 4 cut(s) 132, 133, 520, 642
ClaI ATCGAT 1 cut(s) 630
CseI GACGC 2 cut(s) 269, 680
Csp6I GTAC 6 cut(s) 233, 566, 596, 735, 1065, 1130
CviAII CATG 2 cut(s) 77, 183
CviQI GTAC 6 cut(s) 233, 566, 596, 735, 1065, 1130
DdeI CTNAG 7 cut(s) 343, 417, 457, 569, 599, 879, 1183
DpnI GATC 2 cut(s) 541, 989
DpnII GATC 2 cut(s) 539, 987
Eam1104I CTCTTC 1 cut(s) 1116
EarI CTCTTC 1 cut(s) 1116
Eco130I CCWWGG 1 cut(s) 995
Eco24I GRGCYC 1 cut(s) 136
Eco31I GGTCTC 1 cut(s) 413
Eco32I GATATC 2 cut(s) 487, 953
Eco47I GGWCC 1 cut(s) 520
Eco57I CTGAAG 1 cut(s) 846
EcoO109I RGGNCCY 3 cut(s) 132, 520, 642
EcoRII CCWGG 1 cut(s) 411
EcoRV GATATC 2 cut(s) 487, 953
EcoT14I CCWWGG 1 cut(s) 995
EcoT38I GRGCYC 1 cut(s) 136
ErhI CCWWGG 1 cut(s) 995
FaeI CATG 2 cut(s) 80, 186
FaqI GGGAC 2 cut(s) 506, 1059
FatI CATG 2 cut(s) 76, 182
Fnu4HI GCNGC 2 cut(s) 338, 430
FokI GGATG 1 cut(s) 785
FriOI GRGCYC 1 cut(s) 136
Fsp4HI GCNGC 2 cut(s) 338, 430
FspBI CTAG 3 cut(s) 197, 500, 996
GluI GCNGC 2 cut(s) 338, 430
HaeIII GGCC 2 cut(s) 134, 643
HapII CCGG 1 cut(s) 935
HgaI GACGC 2 cut(s) 269, 680
Hin1I GRCGYC 1 cut(s) 672
Hin1II CATG 2 cut(s) 80, 186
HincII GTYRAC 1 cut(s) 697
HindII GTYRAC 1 cut(s) 697
HindIII AAGCTT 1 cut(s) 272
HinfI GANTC 5 cut(s) 242, 291, 620, 776, 856
HpaII CCGG 1 cut(s) 935
HphI GGTGA 1 cut(s) 64
Hpy166II GTNNAC 5 cut(s) 666, 697, 916, 929, 1111
Hpy188I TCNGA 4 cut(s) 313, 810, 880, 1013
Hpy188III TCNNGA 1 cut(s) 322
Hpy8I GTNNAC 5 cut(s) 666, 697, 916, 929, 1111
HpyAV CCTTC 4 cut(s) 735, 790, 1021, 1036
HpyCH4III ACNGT 3 cut(s) 163, 442, 753
HpyCH4IV ACGT 1 cut(s) 235
HpyCH4V TGCA 3 cut(s) 28, 1099, 1172
HpyF10VI GCNNNNNNNGC 1 cut(s) 944
HpyF3I CTNAG 7 cut(s) 343, 417, 457, 569, 599, 879, 1183
HpySE526I ACGT 1 cut(s) 235
Hsp92I GRCGYC 1 cut(s) 672
Hsp92II CATG 2 cut(s) 80, 186
KpnI GGTACC 1 cut(s) 1068
KroI GCCGGC 1 cut(s) 934
KroNI GCCGGC 1 cut(s) 936
Kzo9I GATC 2 cut(s) 539, 987
LguI GCTCTTC 1 cut(s) 1116
Lsp1109I GCAGC 1 cut(s) 324
MaeI CTAG 3 cut(s) 197, 500, 996
MaeII ACGT 1 cut(s) 235
MaeIII GTNAC 2 cut(s) 70, 603
MalI GATC 2 cut(s) 541, 989
MboI GATC 2 cut(s) 539, 987
MboII GAAGA 5 cut(s) 33, 367, 839, 895, 1133
MhlI GDGCHC 1 cut(s) 136
MmeI TCCRAC 1 cut(s) 800
MnlI CCTC 8 cut(s) 102, 216, 218, 534, 594, 732, 786, 1186
MroNI GCCGGC 1 cut(s) 934
MseI TTAA 7 cut(s) 128, 270, 534, 555, 684, 1034, 1073
MslI CAYNNNNRTG 2 cut(s) 710, 866
MspI CCGG 1 cut(s) 935
MspR9I CCNGG 1 cut(s) 413
Mva1269I GAATGC 1 cut(s) 405
MvaI CCWGG 1 cut(s) 413
MvnI CGCG 1 cut(s) 1070
MwoI GCNNNNNNNGC 1 cut(s) 944
NaeI GCCGGC 1 cut(s) 936
NdeII GATC 2 cut(s) 539, 987
NgoMIV GCCGGC 1 cut(s) 934
NlaIII CATG 2 cut(s) 80, 186
NlaIV GGNNCC 6 cut(s) 90, 134, 388, 522, 644, 1066
NmuCI GTSAC 2 cut(s) 70, 603
PciSI GCTCTTC 1 cut(s) 1116
PctI GAATGC 1 cut(s) 405
PdiI GCCGGC 1 cut(s) 936
PfeI GAWTC 5 cut(s) 242, 291, 620, 776, 856
PkrI GCNGC 2 cut(s) 339, 431
PpuMI RGGWCCY 1 cut(s) 520
PsiI TTATAA 1 cut(s) 176
Psp5II RGGWCCY 1 cut(s) 520
Psp6I CCWGG 1 cut(s) 411
PspGI CCWGG 1 cut(s) 411
PspN4I GGNNCC 6 cut(s) 90, 134, 388, 522, 644, 1066
PspOMI GGGCCC 1 cut(s) 132
PspPI GGNCC 4 cut(s) 132, 133, 520, 642
PspPPI RGGWCCY 1 cut(s) 520
RsaI GTAC 6 cut(s) 234, 567, 597, 736, 1066, 1131
RsaNI GTAC 6 cut(s) 233, 566, 596, 735, 1065, 1130
RseI CAYNNNNRTG 2 cut(s) 710, 866
SapI GCTCTTC 1 cut(s) 1116
SaqAI TTAA 7 cut(s) 128, 270, 534, 555, 684, 1034, 1073
SatI GCNGC 2 cut(s) 338, 430
Sau3AI GATC 2 cut(s) 539, 987
Sau96I GGNCC 4 cut(s) 132, 133, 520, 642
ScaI AGTACT 2 cut(s) 567, 597
ScrFI CCNGG 1 cut(s) 413
SduI GDGCHC 1 cut(s) 136
SfcI CTRYAG 1 cut(s) 16
SinI GGWCC 1 cut(s) 520
SmiMI CAYNNNNRTG 2 cut(s) 710, 866
SsiI CCGC 2 cut(s) 429, 1068
SspMI CTAG 3 cut(s) 197, 500, 996
StyD4I CCNGG 1 cut(s) 411
StyI CCWWGG 1 cut(s) 995
TaaI ACNGT 3 cut(s) 163, 442, 753
TaiI ACGT 1 cut(s) 238
TaqI TCGA 1 cut(s) 630
TatI WGTACW 3 cut(s) 565, 595, 734
TauI GCSGC 1 cut(s) 432
TfiI GAWTC 5 cut(s) 242, 291, 620, 776, 856
Tru1I TTAA 7 cut(s) 128, 270, 534, 555, 684, 1034, 1073
Tru9I TTAA 7 cut(s) 128, 270, 534, 555, 684, 1034, 1073
TscAI CASTG 6 cut(s) 355, 551, 666, 673, 756, 964
TseFI GTSAC 2 cut(s) 70, 603
TseI GCWGC 1 cut(s) 337
Tsp45I GTSAC 2 cut(s) 70, 603
TspDTI ATGAA 8 cut(s) 102, 156, 171, 520, 702, 758, 789, 1134
TspGWI ACGGA 1 cut(s) 1054
TspRI CASTG 6 cut(s) 355, 551, 666, 673, 756, 964
VpaK11BI GGWCC 1 cut(s) 520
XapI RAATTY 2 cut(s) 178, 886
XmaJI CCTAGG 1 cut(s) 995
XspI CTAG 3 cut(s) 197, 500, 996
ZrmI AGTACT 2 cut(s) 567, 597
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.