Rmu_sc0007105.1_g000005
ERF Family

mTERF

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007105.1
OG0000263
Physical Location & Seq
Forward (+)
28998 .. 30080
1083 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007105.1_g000005.1.cds

Sequence Viewer

Length: 549 bp
atgggttggcagcctgcagatgtggctggggatccatatgttttaacttatagtttggagaagcggatcatacctacatgttcagttattagagttctcctgttgaagggcttaataacgaagggagagtgttccttggtttccattctgaagaaaagtgagaagtacttgttgaataagattgtgctcaaatatcaagagcaagtacctgaactattgagcatctatcaaggcaaaatgggtcttgcagacctcggattaggatttgaggacagagctagactgaatcatttggtgctagttaggttagctttgttccggatcagtggatataagatgcttctccatggaggagagacaccatatgatgaaaaaaatgcctcaacttctcagcgtagaagtggtggttttatgaagcctggcgagcagcgtggaaatggtcacttgataaataatcatgcacaggatccatattggatgcctcaacttttcagcatagaagtggtggttttatcaagcctggcgagcagcgtggaaatggtcacttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
mTERF

Protein Analysis

182

Amino Acids

20.34

Weight (kDa)

9.04

Isoelectric Point (pI)

38.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000263)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G21150 AT1G21150 AT1G21150
fragaria_vesca FvH4_4g17900 FvH4_6g26110 FvH4_6g33880 FvH4_6g33900 FvH4_6g34011 FvH4_6g34011 FvH4_6g34011 FvH4_6g34011 FvH4_6g34030 FvH4_6g34040 FvH4_6g34070 FvH4_6g34070 FvH4_7g12830
malus_domestica MD09G1189800.v1.1 MD09G1189900.v1.1 MD09G1190000.v1.1 MD14G1088800.v1.1 MD14G1088900.v1.1 MD17G1172900.v1.1
pyrus_communis pycom07g03460 pycom09g10650 pycom14g07860
rosa_chinensis RchiOBHm_Chr1g0351891 RchiOBHm_Chr1g0351901 RchiOBHm_Chr2g0143771 RchiOBHm_Chr2g0143861 RchiOBHm_Chr2g0143881 RchiOBHm_Chr2g0143941 RchiOBHm_Chr2g0143951 RchiOBHm_Chr2g0144081 RchiOBHm_Chr2g0144091 RchiOBHm_Chr2g0144211 RchiOBHm_Chr2g0144231 RchiOBHm_Chr2g0144241 RchiOBHm_Chr2g0144291 RchiOBHm_Chr2g0144301 RchiOBHm_Chr2g0144311 RchiOBHm_Chr2g0144331 RchiOBHm_Chr2g0144341 RchiOBHm_Chr4g0422021 RchiOBHm_Chr4g0422031
rosa_laevigata RLG00000007639 RLG00000020063 RLG00000020071 RLG00000020072 RLG00000020074
rosa_multiflora Rmu_co8214640.1_g000001 Rmu_co8471033.1_g000001 Rmu_sc0000789.1_g000002 Rmu_sc0001321.1_g000001 Rmu_sc0004340.1_g000001 Rmu_sc0004897.1_g000001 Rmu_sc0007105.1_g000005 Rmu_sc0009498.1_g000001 Rmu_sc0009498.1_g000002 Rmu_sc0019136.1_g000001 Rmu_sc0020327.1_g000002 Rmu_sc0020327.1_g000003 Rmu_sc0022905.1_g000001 Rmu_sc0032602.1_g000003 Rmu_sc0032602.1_g000004
rosa_roxburghii Rroxscaffold_2G00101380 Rroxscaffold_2G00101390 Rroxscaffold_2G00101400 Rroxscaffold_2G00101410 Rroxscaffold_2G00101480 Rroxscaffold_2G00101490 Rroxscaffold_4G00303470 Rroxscaffold_5G00364130 Rroxscaffold_5G00364150
rosa_rugosa Rorug01G0222600 Rorug02G0384700 Rorug02G0384800 Rorug02G0385800 Rorug02G0385900 Rorug02G0386000 Rorug02G0386000 Rorug02G0386100 Rorug04G0176700 Rorug04G0176800.1
rosa_samantha Rh1AG236500 Rh1AG236600 Rh1BG206900 Rh1CG221000 Rh1CG221100 Rh2BG444800 Rh2BG444900 Rh2BG446600 Rh2BG446700 Rh2BG447600 Rh2BG448100 Rh2BG448400 Rh2BG448500 Rh2BG448700 Rh2BG448800 Rh2CG423500 Rh2CG423600 Rh2CG424800 Rh2CG424900 Rh2CG425100 Rh2CG425200 Rh2DG455200 Rh2DG455300 Rh2DG456900 Rh2DG457000 Rh2DG457100 Rh2DG457600 Rh2DG457900 Rh2DG458000 Rh2DG458300 Rh2DG458400 Rh4AG236100 Rh4AG236200 Rh4BG239200 Rh4CG250900 Rh4CG251100
rosa_wichuraiana Rw0G000400 Rw0G015990 Rw0G017200 Rw1G020580 Rw2G033310 Rw2G035630 Rw2G035640 Rw2G035790 Rw2G035800 Rw2G035840 Rw2G036160 Rw4G019830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 318
AciI CCGC 1 cut(s) 64
AclWI GGATC 6 cut(s) 26, 39, 74, 329, 461, 474
AcuI CTGAAG 1 cut(s) 170
AfaI GTAC 2 cut(s) 167, 207
AfiI CCNNNNNNNGG 1 cut(s) 106
AflIII ACRYGT 1 cut(s) 77
AgsI TTSAA 2 cut(s) 106, 175
AjnI CCWGG 2 cut(s) 418, 519
AluBI AGCT 2 cut(s) 278, 311
AluI AGCT 2 cut(s) 278, 311
Alw21I GWGCWC 1 cut(s) 189
Alw26I GTCTC 1 cut(s) 350
AlwI GGATC 6 cut(s) 26, 39, 74, 329, 461, 474
Aor13HI TCCGGA 1 cut(s) 318
ApeKI GCWGC 3 cut(s) 10, 427, 528
BamHI GGATCC 2 cut(s) 31, 466
Bbv12I GWGCWC 1 cut(s) 189
BbvI GCAGC 3 cut(s) 22, 439, 540
BciT130I CCWGG 2 cut(s) 420, 521
BcoDI GTCTC 1 cut(s) 350
BfaI CTAG 2 cut(s) 279, 299
BfmI CTRYAG 1 cut(s) 15
BisI GCNGC 3 cut(s) 11, 428, 529
BlsI GCNGC 3 cut(s) 12, 429, 530
BmcAI AGTACT 1 cut(s) 167
Bme1390I CCNGG 2 cut(s) 420, 521
BmiI GGNNCC 2 cut(s) 33, 468
BmrFI CCNGG 2 cut(s) 420, 521
BmsI GCATC 3 cut(s) 231, 327, 468
BsaJI CCNNGG 3 cut(s) 135, 253, 346
BsaWI WCCGGW 1 cut(s) 318
Bsc4I CCNNNNNNNGG 1 cut(s) 106
BseAI TCCGGA 1 cut(s) 318
BseBI CCWGG 2 cut(s) 420, 521
BseDI CCNNGG 3 cut(s) 135, 253, 346
BseGI GGATG 1 cut(s) 483
BseLI CCNNNNNNNGG 1 cut(s) 106
BseMII CTCAG 1 cut(s) 404
BseRI GAGGAG 1 cut(s) 366
BseXI GCAGC 3 cut(s) 22, 439, 540
BseYI CCCAGC 1 cut(s) 26
BsiHKAI GWGCWC 1 cut(s) 189
BsiSI CCGG 1 cut(s) 319
BslI CCNNNNNNNGG 1 cut(s) 106
BsmAI GTCTC 1 cut(s) 350
Bsp1286I GDGCHC 1 cut(s) 189
Bsp13I TCCGGA 1 cut(s) 318
Bsp143I GATC 4 cut(s) 31, 66, 321, 466
Bsp19I CCATGG 1 cut(s) 346
BspACI CCGC 1 cut(s) 64
BspCNI CTCAG 1 cut(s) 403
BspEI TCCGGA 1 cut(s) 318
BspLI GGNNCC 2 cut(s) 33, 468
BspMAI CTGCAG 1 cut(s) 19
BspPI GGATC 6 cut(s) 26, 39, 74, 329, 461, 474
BssECI CCNNGG 3 cut(s) 135, 253, 346
BssMI GATC 4 cut(s) 31, 66, 321, 466
BssT1I CCWWGG 2 cut(s) 135, 346
Bst2UI CCWGG 2 cut(s) 420, 521
BstC8I GCNNGC 3 cut(s) 15, 425, 526
BstDEI CTNAG 1 cut(s) 390
BstDSI CCRYGG 1 cut(s) 346
BstENI CCTNNNNNAGG 1 cut(s) 104
BstF5I GGATG 1 cut(s) 483
BstKTI GATC 4 cut(s) 34, 69, 324, 469
BstMAI GTCTC 1 cut(s) 350
BstMBI GATC 4 cut(s) 31, 66, 321, 466
BstMWI GCNNNNNNNGC 3 cut(s) 23, 424, 525
BstNI CCWGG 2 cut(s) 420, 521
BstNSI RCATGY 1 cut(s) 81
BstSCI CCNGG 2 cut(s) 418, 519
BstSFI CTRYAG 1 cut(s) 15
BstV1I GCAGC 3 cut(s) 22, 439, 540
BstX2I RGATCY 2 cut(s) 31, 466
BstYI RGATCY 2 cut(s) 31, 466
BtgI CCRYGG 1 cut(s) 346
BtsCI GGATG 1 cut(s) 483
BtsIMutI CAGTG 1 cut(s) 331
Cac8I GCNNGC 3 cut(s) 15, 425, 526
Csp6I GTAC 2 cut(s) 166, 206
CviAII CATG 3 cut(s) 78, 347, 458
CviJI RGCY 7 cut(s) 13, 26, 111, 278, 311, 418, 519
CviKI_1 RGCY 7 cut(s) 13, 26, 111, 278, 311, 418, 519
CviQI GTAC 2 cut(s) 166, 206
DdeI CTNAG 1 cut(s) 390
DpnI GATC 4 cut(s) 33, 68, 323, 468
DpnII GATC 4 cut(s) 31, 66, 321, 466
Eco130I CCWWGG 2 cut(s) 135, 346
Eco57I CTGAAG 1 cut(s) 170
EcoNI CCTNNNNNAGG 1 cut(s) 104
EcoRII CCWGG 2 cut(s) 418, 519
EcoT14I CCWWGG 2 cut(s) 135, 346
ErhI CCWWGG 2 cut(s) 135, 346
FaeI CATG 3 cut(s) 81, 350, 461
FatI CATG 3 cut(s) 77, 346, 457
FauNDI CATATG 2 cut(s) 37, 364
Fnu4HI GCNGC 3 cut(s) 11, 428, 529
FokI GGATG 1 cut(s) 490
Fsp4HI GCNGC 3 cut(s) 11, 428, 529
FspBI CTAG 2 cut(s) 279, 299
GluI GCNGC 3 cut(s) 11, 428, 529
GsaI CCCAGC 1 cut(s) 30
HapII CCGG 1 cut(s) 319
Hin1II CATG 3 cut(s) 81, 350, 461
HinfI GANTC 1 cut(s) 286
HpaII CCGG 1 cut(s) 319
Hpy188I TCNGA 2 cut(s) 150, 257
Hpy188III TCNNGA 2 cut(s) 197, 319
HpyAV CCTTC 2 cut(s) 100, 115
HpyCH4V TGCA 3 cut(s) 17, 248, 461
HpyF10VI GCNNNNNNNGC 3 cut(s) 23, 424, 525
HpyF3I CTNAG 1 cut(s) 390
Hsp92II CATG 3 cut(s) 81, 350, 461
Kpn2I TCCGGA 1 cut(s) 318
Kzo9I GATC 4 cut(s) 31, 66, 321, 466
Lsp1109I GCAGC 3 cut(s) 22, 439, 540
LweI GCATC 3 cut(s) 231, 327, 468
MaeI CTAG 2 cut(s) 279, 299
MaeIII GTNAC 2 cut(s) 440, 541
MalI GATC 4 cut(s) 33, 68, 323, 468
MboI GATC 4 cut(s) 31, 66, 321, 466
MboII GAAGA 1 cut(s) 163
MflI RGATCY 2 cut(s) 31, 466
MhlI GDGCHC 1 cut(s) 189
MnlI CCTC 5 cut(s) 262, 263, 344, 391, 492
MroI TCCGGA 1 cut(s) 318
MseI TTAA 2 cut(s) 44, 113
MslI CAYNNNNRTG 1 cut(s) 500
MspI CCGG 1 cut(s) 319
MspR9I CCNGG 2 cut(s) 420, 521
MvaI CCWGG 2 cut(s) 420, 521
MwoI GCNNNNNNNGC 3 cut(s) 23, 424, 525
NcoI CCATGG 1 cut(s) 346
NdeI CATATG 2 cut(s) 37, 364
NdeII GATC 4 cut(s) 31, 66, 321, 466
NlaIII CATG 3 cut(s) 81, 350, 461
NlaIV GGNNCC 2 cut(s) 33, 468
NmuCI GTSAC 2 cut(s) 440, 541
NspI RCATGY 1 cut(s) 81
PciI ACATGT 1 cut(s) 77
PfeI GAWTC 1 cut(s) 286
PkrI GCNGC 3 cut(s) 12, 429, 530
PscI ACATGT 1 cut(s) 77
Psp6I CCWGG 2 cut(s) 418, 519
PspFI CCCAGC 1 cut(s) 26
PspGI CCWGG 2 cut(s) 418, 519
PspN4I GGNNCC 2 cut(s) 33, 468
PstI CTGCAG 1 cut(s) 19
PsuI RGATCY 2 cut(s) 31, 466
RsaI GTAC 2 cut(s) 167, 207
RsaNI GTAC 2 cut(s) 166, 206
RseI CAYNNNNRTG 1 cut(s) 500
SaqAI TTAA 2 cut(s) 44, 113
SatI GCNGC 3 cut(s) 11, 428, 529
Sau3AI GATC 4 cut(s) 31, 66, 321, 466
ScaI AGTACT 1 cut(s) 167
ScrFI CCNGG 2 cut(s) 420, 521
SduI GDGCHC 1 cut(s) 189
SetI ASST 6 cut(s) 76, 211, 255, 280, 308, 313
SfaNI GCATC 3 cut(s) 231, 327, 468
SfcI CTRYAG 1 cut(s) 15
SmiMI CAYNNNNRTG 1 cut(s) 500
SsiI CCGC 1 cut(s) 64
SspMI CTAG 2 cut(s) 279, 299
StyD4I CCNGG 2 cut(s) 418, 519
StyI CCWWGG 2 cut(s) 135, 346
TatI WGTACW 1 cut(s) 165
TfiI GAWTC 1 cut(s) 286
Tru1I TTAA 2 cut(s) 44, 113
Tru9I TTAA 2 cut(s) 44, 113
TscAI CASTG 1 cut(s) 331
TseFI GTSAC 2 cut(s) 440, 541
TseI GCWGC 3 cut(s) 10, 427, 528
Tsp45I GTSAC 2 cut(s) 440, 541
TspDTI ATGAA 2 cut(s) 384, 428
TspRI CASTG 1 cut(s) 331
XagI CCTNNNNNAGG 1 cut(s) 104
XceI RCATGY 1 cut(s) 81
XspI CTAG 2 cut(s) 279, 299
ZrmI AGTACT 1 cut(s) 167
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.