Rroxscaffold_4G00303470
ERF Family

mTERF

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000263
Physical Location & Seq
Forward (+)
23888903 .. 23889727
825 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00303470.1

Sequence Viewer

Length: 351 bp
ATGGTTCGGTCAAAGTGGAGGAAGACTTGGGCTGACGAAAACCCTGAGAATCAAATTCACGCGGAGCCTGCCGATGTGGCTGGGGATCCATATGTTTTAACTTATAGTTTGGAGAAGCGGATCATACCTACATGTTCAGTTATTAGAGTTCTCCTGTTGAAGGGCTTATTAACGAAGGGAGAGTGTTCCTTGGTTTCCATTCTGAAGAAAAGTGAGAAGTACTTGTTGAATAAGTTTGTGCTCAAACATCAAGAGCAAGTACCTGAACCATTGAGCATCTATCAAGGCGAAATGGGTCTTCCAGACCTCGGCTTAGGATTTGAGGACAGAGCTAGACTGAATCATTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
mTERF

Protein Analysis

116

Amino Acids

13.23

Weight (kDa)

7.78

Isoelectric Point (pI)

30.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
mTERF PF02536 23 - 73 3.7e-06 mTERF
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000263)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G21150 AT1G21150 AT1G21150
fragaria_vesca FvH4_4g17900 FvH4_6g26110 FvH4_6g33880 FvH4_6g33900 FvH4_6g34011 FvH4_6g34011 FvH4_6g34011 FvH4_6g34011 FvH4_6g34030 FvH4_6g34040 FvH4_6g34070 FvH4_6g34070 FvH4_7g12830
malus_domestica MD09G1189800.v1.1 MD09G1189900.v1.1 MD09G1190000.v1.1 MD14G1088800.v1.1 MD14G1088900.v1.1 MD17G1172900.v1.1
pyrus_communis pycom07g03460 pycom09g10650 pycom14g07860
rosa_chinensis RchiOBHm_Chr1g0351891 RchiOBHm_Chr1g0351901 RchiOBHm_Chr2g0143771 RchiOBHm_Chr2g0143861 RchiOBHm_Chr2g0143881 RchiOBHm_Chr2g0143941 RchiOBHm_Chr2g0143951 RchiOBHm_Chr2g0144081 RchiOBHm_Chr2g0144091 RchiOBHm_Chr2g0144211 RchiOBHm_Chr2g0144231 RchiOBHm_Chr2g0144241 RchiOBHm_Chr2g0144291 RchiOBHm_Chr2g0144301 RchiOBHm_Chr2g0144311 RchiOBHm_Chr2g0144331 RchiOBHm_Chr2g0144341 RchiOBHm_Chr4g0422021 RchiOBHm_Chr4g0422031
rosa_laevigata RLG00000007639 RLG00000020063 RLG00000020071 RLG00000020072 RLG00000020074
rosa_multiflora Rmu_co8214640.1_g000001 Rmu_co8471033.1_g000001 Rmu_sc0000789.1_g000002 Rmu_sc0001321.1_g000001 Rmu_sc0004340.1_g000001 Rmu_sc0004897.1_g000001 Rmu_sc0007105.1_g000005 Rmu_sc0009498.1_g000001 Rmu_sc0009498.1_g000002 Rmu_sc0019136.1_g000001 Rmu_sc0020327.1_g000002 Rmu_sc0020327.1_g000003 Rmu_sc0022905.1_g000001 Rmu_sc0032602.1_g000003 Rmu_sc0032602.1_g000004
rosa_roxburghii Rroxscaffold_2G00101380 Rroxscaffold_2G00101390 Rroxscaffold_2G00101400 Rroxscaffold_2G00101410 Rroxscaffold_2G00101480 Rroxscaffold_2G00101490 Rroxscaffold_4G00303470 Rroxscaffold_5G00364130 Rroxscaffold_5G00364150
rosa_rugosa Rorug01G0222600 Rorug02G0384700 Rorug02G0384800 Rorug02G0385800 Rorug02G0385900 Rorug02G0386000 Rorug02G0386000 Rorug02G0386100 Rorug04G0176700 Rorug04G0176800.1
rosa_samantha Rh1AG236500 Rh1AG236600 Rh1BG206900 Rh1CG221000 Rh1CG221100 Rh2BG444800 Rh2BG444900 Rh2BG446600 Rh2BG446700 Rh2BG447600 Rh2BG448100 Rh2BG448400 Rh2BG448500 Rh2BG448700 Rh2BG448800 Rh2CG423500 Rh2CG423600 Rh2CG424800 Rh2CG424900 Rh2CG425100 Rh2CG425200 Rh2DG455200 Rh2DG455300 Rh2DG456900 Rh2DG457000 Rh2DG457100 Rh2DG457600 Rh2DG457900 Rh2DG458000 Rh2DG458300 Rh2DG458400 Rh4AG236100 Rh4AG236200 Rh4BG239200 Rh4CG250900 Rh4CG251100
rosa_wichuraiana Rw0G000400 Rw0G015990 Rw0G017200 Rw1G020580 Rw2G033310 Rw2G035630 Rw2G035640 Rw2G035790 Rw2G035800 Rw2G035840 Rw2G036160 Rw4G019830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 62
AciI CCGC 2 cut(s) 62, 118
AclWI GGATC 3 cut(s) 80, 93, 128
AcsI RAATTY 1 cut(s) 54
AcuI CTGAAG 1 cut(s) 224
AfaI GTAC 2 cut(s) 221, 261
AfiI CCNNNNNNNGG 2 cut(s) 160, 308
AflIII ACRYGT 1 cut(s) 131
AgsI TTSAA 2 cut(s) 160, 229
AluBI AGCT 1 cut(s) 332
AluI AGCT 1 cut(s) 332
Alw21I GWGCWC 1 cut(s) 243
AlwI GGATC 3 cut(s) 80, 93, 128
ApoI RAATTY 1 cut(s) 54
BamHI GGATCC 1 cut(s) 85
BbsI GAAGAC 2 cut(s) 29, 290
Bbv12I GWGCWC 1 cut(s) 243
BfaI CTAG 1 cut(s) 333
BglI GCCNNNNNGGC 1 cut(s) 77
BmcAI AGTACT 1 cut(s) 221
BmiI GGNNCC 2 cut(s) 66, 87
BmsI GCATC 1 cut(s) 285
BpiI GAAGAC 2 cut(s) 29, 290
Bpu10I CCTNAGC 1 cut(s) 313
BsaJI CCNNGG 2 cut(s) 189, 307
Bsc4I CCNNNNNNNGG 2 cut(s) 160, 308
BseDI CCNNGG 2 cut(s) 189, 307
BseLI CCNNNNNNNGG 2 cut(s) 160, 308
BseMII CTCAG 1 cut(s) 36
BseYI CCCAGC 1 cut(s) 80
Bsh1236I CGCG 1 cut(s) 62
BsiHKAI GWGCWC 1 cut(s) 243
BslI CCNNNNNNNGG 2 cut(s) 160, 308
Bsp1286I GDGCHC 1 cut(s) 243
Bsp143I GATC 2 cut(s) 85, 120
BspACI CCGC 2 cut(s) 62, 118
BspCNI CTCAG 1 cut(s) 37
BspFNI CGCG 1 cut(s) 62
BspLI GGNNCC 2 cut(s) 66, 87
BspPI GGATC 3 cut(s) 80, 93, 128
BssECI CCNNGG 2 cut(s) 189, 307
BssMI GATC 2 cut(s) 85, 120
BssT1I CCWWGG 1 cut(s) 189
BstC8I GCNNGC 1 cut(s) 69
BstDEI CTNAG 2 cut(s) 45, 313
BstENI CCTNNNNNAGG 1 cut(s) 158
BstFNI CGCG 1 cut(s) 62
BstKTI GATC 2 cut(s) 88, 123
BstMBI GATC 2 cut(s) 85, 120
BstMWI GCNNNNNNNGC 2 cut(s) 68, 77
BstNSI RCATGY 1 cut(s) 135
BstUI CGCG 1 cut(s) 62
BstV2I GAAGAC 2 cut(s) 29, 290
BstX2I RGATCY 1 cut(s) 85
BstYI RGATCY 1 cut(s) 85
Cac8I GCNNGC 1 cut(s) 69
Csp6I GTAC 2 cut(s) 220, 260
CviAII CATG 1 cut(s) 132
CviJI RGCY 6 cut(s) 32, 67, 80, 165, 312, 332
CviKI_1 RGCY 6 cut(s) 32, 67, 80, 165, 312, 332
CviQI GTAC 2 cut(s) 220, 260
DdeI CTNAG 2 cut(s) 45, 313
DpnI GATC 2 cut(s) 87, 122
DpnII GATC 2 cut(s) 85, 120
Eco130I CCWWGG 1 cut(s) 189
Eco57I CTGAAG 1 cut(s) 224
EcoNI CCTNNNNNAGG 1 cut(s) 158
EcoT14I CCWWGG 1 cut(s) 189
ErhI CCWWGG 1 cut(s) 189
FaeI CATG 1 cut(s) 135
FaiI YATR 5 cut(s) 91, 93, 105, 125, 133
FatI CATG 1 cut(s) 131
FauNDI CATATG 1 cut(s) 91
FspBI CTAG 1 cut(s) 333
GsaI CCCAGC 1 cut(s) 84
Hin1II CATG 1 cut(s) 135
HinfI GANTC 2 cut(s) 49, 340
Hpy188I TCNGA 1 cut(s) 204
Hpy188III TCNNGA 2 cut(s) 251, 302
HpyAV CCTTC 2 cut(s) 154, 169
HpyF10VI GCNNNNNNNGC 2 cut(s) 68, 77
HpyF3I CTNAG 2 cut(s) 45, 313
Hsp92II CATG 1 cut(s) 135
Kzo9I GATC 2 cut(s) 85, 120
LmnI GCTCC 1 cut(s) 64
LpnPI CCDG 6 cut(s) 57, 66, 81, 167, 276, 315
LweI GCATC 1 cut(s) 285
MaeI CTAG 1 cut(s) 333
MalI GATC 2 cut(s) 87, 122
MboI GATC 2 cut(s) 85, 120
MboII GAAGA 3 cut(s) 34, 217, 290
MflI RGATCY 1 cut(s) 85
MhlI GDGCHC 1 cut(s) 243
MluCI AATT 1 cut(s) 54
MnlI CCTC 3 cut(s) 12, 316, 317
MseI TTAA 2 cut(s) 98, 170
MvnI CGCG 1 cut(s) 62
MwoI GCNNNNNNNGC 2 cut(s) 68, 77
NdeI CATATG 1 cut(s) 91
NdeII GATC 2 cut(s) 85, 120
NlaIII CATG 1 cut(s) 135
NlaIV GGNNCC 2 cut(s) 66, 87
NmeAIII GCCGAG 1 cut(s) 288
NspI RCATGY 1 cut(s) 135
PciI ACATGT 1 cut(s) 131
PfeI GAWTC 2 cut(s) 49, 340
PscI ACATGT 1 cut(s) 131
PspFI CCCAGC 1 cut(s) 80
PspN4I GGNNCC 2 cut(s) 66, 87
PsuI RGATCY 1 cut(s) 85
RsaI GTAC 2 cut(s) 221, 261
RsaNI GTAC 2 cut(s) 220, 260
SaqAI TTAA 2 cut(s) 98, 170
Sau3AI GATC 2 cut(s) 85, 120
ScaI AGTACT 1 cut(s) 221
SduI GDGCHC 1 cut(s) 243
SetI ASST 4 cut(s) 130, 265, 309, 334
SfaNI GCATC 1 cut(s) 285
Sse9I AATT 1 cut(s) 54
SsiI CCGC 2 cut(s) 62, 118
SspMI CTAG 1 cut(s) 333
StyI CCWWGG 1 cut(s) 189
TasI AATT 1 cut(s) 54
TatI WGTACW 1 cut(s) 219
TfiI GAWTC 2 cut(s) 49, 340
Tru1I TTAA 2 cut(s) 98, 170
Tru9I TTAA 2 cut(s) 98, 170
XagI CCTNNNNNAGG 1 cut(s) 158
XapI RAATTY 1 cut(s) 54
XceI RCATGY 1 cut(s) 135
XspI CTAG 1 cut(s) 333
ZrmI AGTACT 1 cut(s) 221
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.