Rmu_sc0020327.1_g000003
ERF Family

mTERF

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0020327.1
OG0000263
Physical Location & Seq
Reverse (-)
9070 .. 9447
378 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0020327.1_g000003.1.cds

Sequence Viewer

Length: 378 bp
atgtgggatgtccccagaaaacgctatgtgtcagaaagggtacactttgaaaccccagagcgacccgactcggttattaagctttccaaaaactatggactcaacgatgcccaaatcaccttgcttgttaagaaattgccaaggttgctcttatacaatcctgatacccttttacccaaacttgcatttttcggtactctaggcttttcaggcaccgacctcgccaatgccctctttcacaatcccatgatcttgacgcgaagcttagagaactgtatccttccttgttttgatctgatcaaaagtatagttgttgaggataaacgggttgcgactgctttaggacctcgaaatgaacagtgtcggccgggtcactaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
mTERF

Protein Analysis

125

Amino Acids

14.22

Weight (kDa)

9.12

Isoelectric Point (pI)

27.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000263)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G21150 AT1G21150 AT1G21150
fragaria_vesca FvH4_4g17900 FvH4_6g26110 FvH4_6g33880 FvH4_6g33900 FvH4_6g34011 FvH4_6g34011 FvH4_6g34011 FvH4_6g34011 FvH4_6g34030 FvH4_6g34040 FvH4_6g34070 FvH4_6g34070 FvH4_7g12830
malus_domestica MD09G1189800.v1.1 MD09G1189900.v1.1 MD09G1190000.v1.1 MD14G1088800.v1.1 MD14G1088900.v1.1 MD17G1172900.v1.1
pyrus_communis pycom07g03460 pycom09g10650 pycom14g07860
rosa_chinensis RchiOBHm_Chr1g0351891 RchiOBHm_Chr1g0351901 RchiOBHm_Chr2g0143771 RchiOBHm_Chr2g0143861 RchiOBHm_Chr2g0143881 RchiOBHm_Chr2g0143941 RchiOBHm_Chr2g0143951 RchiOBHm_Chr2g0144081 RchiOBHm_Chr2g0144091 RchiOBHm_Chr2g0144211 RchiOBHm_Chr2g0144231 RchiOBHm_Chr2g0144241 RchiOBHm_Chr2g0144291 RchiOBHm_Chr2g0144301 RchiOBHm_Chr2g0144311 RchiOBHm_Chr2g0144331 RchiOBHm_Chr2g0144341 RchiOBHm_Chr4g0422021 RchiOBHm_Chr4g0422031
rosa_laevigata RLG00000007639 RLG00000020063 RLG00000020071 RLG00000020072 RLG00000020074
rosa_multiflora Rmu_co8214640.1_g000001 Rmu_co8471033.1_g000001 Rmu_sc0000789.1_g000002 Rmu_sc0001321.1_g000001 Rmu_sc0004340.1_g000001 Rmu_sc0004897.1_g000001 Rmu_sc0007105.1_g000005 Rmu_sc0009498.1_g000001 Rmu_sc0009498.1_g000002 Rmu_sc0019136.1_g000001 Rmu_sc0020327.1_g000002 Rmu_sc0020327.1_g000003 Rmu_sc0022905.1_g000001 Rmu_sc0032602.1_g000003 Rmu_sc0032602.1_g000004
rosa_roxburghii Rroxscaffold_2G00101380 Rroxscaffold_2G00101390 Rroxscaffold_2G00101400 Rroxscaffold_2G00101410 Rroxscaffold_2G00101480 Rroxscaffold_2G00101490 Rroxscaffold_4G00303470 Rroxscaffold_5G00364130 Rroxscaffold_5G00364150
rosa_rugosa Rorug01G0222600 Rorug02G0384700 Rorug02G0384800 Rorug02G0385800 Rorug02G0385900 Rorug02G0386000 Rorug02G0386000 Rorug02G0386100 Rorug04G0176700 Rorug04G0176800.1
rosa_samantha Rh1AG236500 Rh1AG236600 Rh1BG206900 Rh1CG221000 Rh1CG221100 Rh2BG444800 Rh2BG444900 Rh2BG446600 Rh2BG446700 Rh2BG447600 Rh2BG448100 Rh2BG448400 Rh2BG448500 Rh2BG448700 Rh2BG448800 Rh2CG423500 Rh2CG423600 Rh2CG424800 Rh2CG424900 Rh2CG425100 Rh2CG425200 Rh2DG455200 Rh2DG455300 Rh2DG456900 Rh2DG457000 Rh2DG457100 Rh2DG457600 Rh2DG457900 Rh2DG458000 Rh2DG458300 Rh2DG458400 Rh4AG236100 Rh4AG236200 Rh4BG239200 Rh4CG250900 Rh4CG251100
rosa_wichuraiana Rw0G000400 Rw0G015990 Rw0G017200 Rw1G020580 Rw2G033310 Rw2G035630 Rw2G035640 Rw2G035790 Rw2G035800 Rw2G035840 Rw2G036160 Rw4G019830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 212
AccII CGCG 1 cut(s) 259
AcoI YGGCCR 1 cut(s) 365
AfaI GTAC 2 cut(s) 42, 196
AgsI TTSAA 1 cut(s) 50
AluBI AGCT 2 cut(s) 82, 264
AluI AGCT 2 cut(s) 82, 264
AoxI GGCC 1 cut(s) 365
AspS9I GGNCC 1 cut(s) 344
AsuC2I CCSGG 1 cut(s) 369
AsuHPI GGTGA 1 cut(s) 109
AvaII GGWCC 1 cut(s) 344
BanI GGYRCC 1 cut(s) 212
BcgI CGANNNNNNTGC 2 cut(s) 202, 236
BciVI GTATCC 1 cut(s) 287
BclI TGATCA 1 cut(s) 297
BcnI CCSGG 1 cut(s) 369
BfaI CTAG 1 cut(s) 200
BfuI GTATCC 1 cut(s) 287
Bme1390I CCNGG 1 cut(s) 369
Bme18I GGWCC 1 cut(s) 344
BmgT120I GGNCC 1 cut(s) 344
BmiI GGNNCC 1 cut(s) 214
BmrFI CCNGG 1 cut(s) 369
BmsI GCATC 1 cut(s) 97
BpuMI CCSGG 1 cut(s) 369
BsaJI CCNNGG 1 cut(s) 140
BseDI CCNNGG 1 cut(s) 140
BseGI GGATG 1 cut(s) 13
BseX3I CGGCCG 1 cut(s) 365
Bsh1236I CGCG 1 cut(s) 259
Bsh1285I CGRYCG 1 cut(s) 368
BshFI GGCC 1 cut(s) 367
BshNI GGYRCC 1 cut(s) 212
BsiEI CGRYCG 1 cut(s) 368
BsiSI CCGG 1 cut(s) 368
BsnI GGCC 1 cut(s) 367
Bsp143I GATC 3 cut(s) 249, 292, 297
BspANI GGCC 1 cut(s) 367
BspFNI CGCG 1 cut(s) 259
BspLI GGNNCC 1 cut(s) 214
BspT107I GGYRCC 1 cut(s) 212
BssECI CCNNGG 1 cut(s) 140
BssMI GATC 3 cut(s) 249, 292, 297
BssT1I CCWWGG 1 cut(s) 140
Bst4CI ACNGT 2 cut(s) 275, 360
BstDEI CTNAG 1 cut(s) 265
BstF5I GGATG 1 cut(s) 13
BstFNI CGCG 1 cut(s) 259
BstKTI GATC 3 cut(s) 252, 295, 300
BstMBI GATC 3 cut(s) 249, 292, 297
BstMCI CGRYCG 1 cut(s) 368
BstMWI GCNNNNNNNGC 2 cut(s) 145, 210
BstSCI CCNGG 1 cut(s) 367
BstUI CGCG 1 cut(s) 259
BstZI CGGCCG 1 cut(s) 365
BsuI GTATCC 1 cut(s) 287
BsuRI GGCC 1 cut(s) 367
BtsCI GGATG 1 cut(s) 13
BtsIMutI CAGTG 1 cut(s) 365
Cfr13I GGNCC 1 cut(s) 344
CseI GACGC 1 cut(s) 265
Csp6I GTAC 2 cut(s) 41, 195
CviAII CATG 1 cut(s) 247
CviJI RGCY 4 cut(s) 82, 204, 264, 367
CviKI_1 RGCY 4 cut(s) 82, 204, 264, 367
CviQI GTAC 2 cut(s) 41, 195
DdeI CTNAG 1 cut(s) 265
DpnI GATC 3 cut(s) 251, 294, 299
DpnII GATC 3 cut(s) 249, 292, 297
EaeI YGGCCR 1 cut(s) 365
EagI CGGCCG 1 cut(s) 365
EclXI CGGCCG 1 cut(s) 365
Eco130I CCWWGG 1 cut(s) 140
Eco47I GGWCC 1 cut(s) 344
Eco52I CGGCCG 1 cut(s) 365
EcoO109I RGGNCCY 1 cut(s) 344
EcoT14I CCWWGG 1 cut(s) 140
ErhI CCWWGG 1 cut(s) 140
FaeI CATG 1 cut(s) 250
FaiI YATR 5 cut(s) 27, 96, 154, 248, 308
FatI CATG 1 cut(s) 246
FbaI TGATCA 1 cut(s) 297
FokI GGATG 1 cut(s) 20
FspBI CTAG 1 cut(s) 200
HaeIII GGCC 1 cut(s) 367
HapII CCGG 1 cut(s) 368
HgaI GACGC 1 cut(s) 265
Hin1II CATG 1 cut(s) 250
HindIII AAGCTT 2 cut(s) 80, 262
HinfI GANTC 2 cut(s) 68, 99
HpaII CCGG 1 cut(s) 368
HphI GGTGA 1 cut(s) 109
Hpy166II GTNNAC 1 cut(s) 43
Hpy188I TCNGA 2 cut(s) 34, 297
Hpy188III TCNNGA 2 cut(s) 161, 253
Hpy8I GTNNAC 1 cut(s) 43
HpyAV CCTTC 1 cut(s) 290
HpyCH4III ACNGT 2 cut(s) 275, 360
HpyCH4V TGCA 1 cut(s) 185
HpyF10VI GCNNNNNNNGC 2 cut(s) 145, 210
HpyF3I CTNAG 1 cut(s) 265
Hsp92II CATG 1 cut(s) 250
Ksp22I TGATCA 1 cut(s) 297
Kzo9I GATC 3 cut(s) 249, 292, 297
LpnPI CCDG 4 cut(s) 28, 69, 174, 195
LweI GCATC 1 cut(s) 97
MaeI CTAG 1 cut(s) 200
MaeIII GTNAC 1 cut(s) 371
MalI GATC 3 cut(s) 251, 294, 299
MboI GATC 3 cut(s) 249, 292, 297
MluCI AATT 1 cut(s) 134
MlyI GAGTC 2 cut(s) 62, 93
MnlI CCTC 4 cut(s) 230, 242, 310, 357
MseI TTAA 2 cut(s) 78, 129
MspI CCGG 1 cut(s) 368
MspR9I CCNGG 1 cut(s) 369
MvnI CGCG 1 cut(s) 259
MwoI GCNNNNNNNGC 2 cut(s) 145, 210
NciI CCSGG 1 cut(s) 369
NdeII GATC 3 cut(s) 249, 292, 297
NlaIII CATG 1 cut(s) 250
NlaIV GGNNCC 1 cut(s) 214
NmuCI GTSAC 1 cut(s) 371
PleI GAGTC 2 cut(s) 62, 93
PpsI GAGTC 2 cut(s) 62, 93
PpuMI RGGWCCY 1 cut(s) 344
Psp5II RGGWCCY 1 cut(s) 344
PspN4I GGNNCC 1 cut(s) 214
PspPI GGNCC 1 cut(s) 344
PspPPI RGGWCCY 1 cut(s) 344
RsaI GTAC 2 cut(s) 42, 196
RsaNI GTAC 2 cut(s) 41, 195
SaqAI TTAA 2 cut(s) 78, 129
Sau3AI GATC 3 cut(s) 249, 292, 297
Sau96I GGNCC 1 cut(s) 344
SchI GAGTC 2 cut(s) 62, 93
ScrFI CCNGG 1 cut(s) 369
SetI ASST 6 cut(s) 84, 122, 146, 222, 266, 349
SfaNI GCATC 1 cut(s) 97
SinI GGWCC 1 cut(s) 344
Sse9I AATT 1 cut(s) 134
SspMI CTAG 1 cut(s) 200
StyD4I CCNGG 1 cut(s) 367
StyI CCWWGG 1 cut(s) 140
TaaI ACNGT 2 cut(s) 275, 360
TaqI TCGA 1 cut(s) 349
TasI AATT 1 cut(s) 134
Tru1I TTAA 2 cut(s) 78, 129
Tru9I TTAA 2 cut(s) 78, 129
TscAI CASTG 1 cut(s) 365
TseFI GTSAC 1 cut(s) 371
Tsp45I GTSAC 1 cut(s) 371
TspDTI ATGAA 1 cut(s) 369
TspRI CASTG 1 cut(s) 365
VpaK11BI GGWCC 1 cut(s) 344
XspI CTAG 1 cut(s) 200
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.