Rmu_sc0022905.1_g000001
ERF Family

termination of mitochondrial transcription

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0022905.1
OG0000263
Physical Location & Seq
Reverse (-)
2 .. 2029
2028 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0022905.1_g000001.1.cds

Sequence Viewer

Length: 974 bp
atgttgatatggaatgtgcaaagtttggagaaccctgaaattcatggtagtgaaatagataaaccccaagagaaagatggctcttttacagtttcataccttgtaaactcatgtgggttgtcaccagaagttgctctctctttgtccaagaagagggtacacttcaaatccagagagaaaccagactcggttattaagcttctgaaacactatggattccatgacacatccatatcccaacttgttaagaaacgcccagaagtgctagtggccaatcctgacaagaccctcttgcccaaacttgagttttttagttctattggcctctcaggcattgacattgctcaggttctttgcagcaacccaagtgttttgaaacgaaatgtagatagaagtctcagtccttgttacgaaatcctcagaagtctacttggttccgacataaagtttgcaggtttctttaagaactcctatcagctgttgacggtcaaatcagtaagcaacattgctcggaatgtttcagttctcagagaacttaaagcaccagaatctttaatctcttactatgcaacatgtcagccactgttaatgtcccttgaaaacgagaagtttcaccaaaatgtcaacaaggtcatgagtttgggattccacccttcaacatcaacgacgttcatgaaagcactatttgtgatctccactacggattcatcaaaatgggcacaaaagatggatttctataaaaagtgtggttggactgaagatgactttttgctggcatttagtaagaatcccctctttatgaacatgacagagaagaatatttctagtacaatggattttattgtcaacaaaatggctttggttcagcctgcagatttggctcattatccgactgtcctaacttatagtttggagaatcggataatacctagggcttcagttattagagttctcctgttgaagggcttaataac
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
mTERF

Protein Analysis

325

Amino Acids

36.64

Weight (kDa)

9.19

Isoelectric Point (pI)

44.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000263)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G21150 AT1G21150 AT1G21150
fragaria_vesca FvH4_4g17900 FvH4_6g26110 FvH4_6g33880 FvH4_6g33900 FvH4_6g34011 FvH4_6g34011 FvH4_6g34011 FvH4_6g34011 FvH4_6g34030 FvH4_6g34040 FvH4_6g34070 FvH4_6g34070 FvH4_7g12830
malus_domestica MD09G1189800.v1.1 MD09G1189900.v1.1 MD09G1190000.v1.1 MD14G1088800.v1.1 MD14G1088900.v1.1 MD17G1172900.v1.1
pyrus_communis pycom07g03460 pycom09g10650 pycom14g07860
rosa_chinensis RchiOBHm_Chr1g0351891 RchiOBHm_Chr1g0351901 RchiOBHm_Chr2g0143771 RchiOBHm_Chr2g0143861 RchiOBHm_Chr2g0143881 RchiOBHm_Chr2g0143941 RchiOBHm_Chr2g0143951 RchiOBHm_Chr2g0144081 RchiOBHm_Chr2g0144091 RchiOBHm_Chr2g0144211 RchiOBHm_Chr2g0144231 RchiOBHm_Chr2g0144241 RchiOBHm_Chr2g0144291 RchiOBHm_Chr2g0144301 RchiOBHm_Chr2g0144311 RchiOBHm_Chr2g0144331 RchiOBHm_Chr2g0144341 RchiOBHm_Chr4g0422021 RchiOBHm_Chr4g0422031
rosa_laevigata RLG00000007639 RLG00000020063 RLG00000020071 RLG00000020072 RLG00000020074
rosa_multiflora Rmu_co8214640.1_g000001 Rmu_co8471033.1_g000001 Rmu_sc0000789.1_g000002 Rmu_sc0001321.1_g000001 Rmu_sc0004340.1_g000001 Rmu_sc0004897.1_g000001 Rmu_sc0007105.1_g000005 Rmu_sc0009498.1_g000001 Rmu_sc0009498.1_g000002 Rmu_sc0019136.1_g000001 Rmu_sc0020327.1_g000002 Rmu_sc0020327.1_g000003 Rmu_sc0022905.1_g000001 Rmu_sc0032602.1_g000003 Rmu_sc0032602.1_g000004
rosa_roxburghii Rroxscaffold_2G00101380 Rroxscaffold_2G00101390 Rroxscaffold_2G00101400 Rroxscaffold_2G00101410 Rroxscaffold_2G00101480 Rroxscaffold_2G00101490 Rroxscaffold_4G00303470 Rroxscaffold_5G00364130 Rroxscaffold_5G00364150
rosa_rugosa Rorug01G0222600 Rorug02G0384700 Rorug02G0384800 Rorug02G0385800 Rorug02G0385900 Rorug02G0386000 Rorug02G0386000 Rorug02G0386100 Rorug04G0176700 Rorug04G0176800.1
rosa_samantha Rh1AG236500 Rh1AG236600 Rh1BG206900 Rh1CG221000 Rh1CG221100 Rh2BG444800 Rh2BG444900 Rh2BG446600 Rh2BG446700 Rh2BG447600 Rh2BG448100 Rh2BG448400 Rh2BG448500 Rh2BG448700 Rh2BG448800 Rh2CG423500 Rh2CG423600 Rh2CG424800 Rh2CG424900 Rh2CG425100 Rh2CG425200 Rh2DG455200 Rh2DG455300 Rh2DG456900 Rh2DG457000 Rh2DG457100 Rh2DG457600 Rh2DG457900 Rh2DG458000 Rh2DG458300 Rh2DG458400 Rh4AG236100 Rh4AG236200 Rh4BG239200 Rh4CG250900 Rh4CG251100
rosa_wichuraiana Rw0G000400 Rw0G015990 Rw0G017200 Rw1G020580 Rw2G033310 Rw2G035630 Rw2G035640 Rw2G035790 Rw2G035800 Rw2G035840 Rw2G036160 Rw4G019830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 443
AccI GTMKAC 1 cut(s) 427
AcoI YGGCCR 1 cut(s) 270
AcsI RAATTY 1 cut(s) 39
AcuI CTGAAG 2 cut(s) 777, 921
AfaI GTAC 2 cut(s) 159, 829
AfiI CCNNNNNNNGG 2 cut(s) 153, 961
AflIII ACRYGT 1 cut(s) 572
AgsI TTSAA 5 cut(s) 166, 376, 599, 657, 961
AluBI AGCT 2 cut(s) 199, 478
AluI AGCT 2 cut(s) 199, 478
Alw26I GTCTC 1 cut(s) 401
AlwNI CAGNNNCTG 1 cut(s) 583
AoxI GGCC 2 cut(s) 270, 322
ApeKI GCWGC 1 cut(s) 357
ApoI RAATTY 1 cut(s) 39
ArsI GACNNNNNNTTYG 2 cut(s) 431, 463
AspA2I CCTAGG 1 cut(s) 929
AsuHPI GGTGA 2 cut(s) 114, 605
AvrII CCTAGG 1 cut(s) 929
BaeGI GKGCMC 1 cut(s) 721
BalI TGGCCA 1 cut(s) 272
BbvI GCAGC 1 cut(s) 369
BccI CCATC 2 cut(s) 71, 721
BcoDI GTCTC 1 cut(s) 401
BfaI CTAG 3 cut(s) 266, 825, 930
BfmI CTRYAG 1 cut(s) 870
BfuAI ACCTGC 1 cut(s) 443
BglI GCCNNNNNGGC 1 cut(s) 330
BisI GCNGC 1 cut(s) 358
BlnI CCTAGG 1 cut(s) 929
BlsI GCNGC 1 cut(s) 359
BmiI GGNNCC 1 cut(s) 436
Bpu10I CCTNAGC 1 cut(s) 345
BpuEI CTTGAG 1 cut(s) 323
BsaJI CCNNGG 1 cut(s) 929
Bsc4I CCNNNNNNNGG 2 cut(s) 153, 961
Bse3DI GCAATG 2 cut(s) 339, 504
BseDI CCNNGG 1 cut(s) 929
BseGI GGATG 1 cut(s) 227
BseLI CCNNNNNNNGG 2 cut(s) 153, 961
BseMI GCAATG 2 cut(s) 339, 504
BseMII CTCAG 5 cut(s) 342, 359, 412, 433, 541
BseSI GKGCMC 1 cut(s) 721
BseXI GCAGC 1 cut(s) 369
BshFI GGCC 2 cut(s) 272, 324
BslFI GGGAC 1 cut(s) 577
BslI CCNNNNNNNGG 2 cut(s) 153, 961
BsmAI GTCTC 1 cut(s) 401
BsmFI GGGAC 1 cut(s) 577
BsnI GGCC 2 cut(s) 272, 324
Bsp1286I GDGCHC 1 cut(s) 721
Bsp143I GATC 1 cut(s) 690
BspANI GGCC 2 cut(s) 272, 324
BspCNI CTCAG 5 cut(s) 341, 358, 411, 432, 540
BspHI TCATGA 2 cut(s) 633, 672
BspLI GGNNCC 1 cut(s) 436
BspMAI CTGCAG 1 cut(s) 874
BspMI ACCTGC 1 cut(s) 443
BsrDI GCAATG 2 cut(s) 339, 504
BssECI CCNNGG 1 cut(s) 929
BssMI GATC 1 cut(s) 690
BssT1I CCWWGG 1 cut(s) 929
Bst4CI ACNGT 4 cut(s) 91, 487, 585, 895
Bst6I CTCTTC 1 cut(s) 146
BstC8I GCNNGC 2 cut(s) 774, 870
BstDEI CTNAG 5 cut(s) 328, 345, 398, 419, 527
BstENI CCTNNNNNAGG 1 cut(s) 959
BstF5I GGATG 1 cut(s) 227
BstKTI GATC 1 cut(s) 693
BstMAI GTCTC 1 cut(s) 401
BstMBI GATC 1 cut(s) 690
BstMWI GCNNNNNNNGC 2 cut(s) 330, 878
BstNSI RCATGY 1 cut(s) 576
BstSFI CTRYAG 1 cut(s) 870
BstSLI GKGCMC 1 cut(s) 721
BstV1I GCAGC 1 cut(s) 369
BsuRI GGCC 2 cut(s) 272, 324
BtsCI GGATG 1 cut(s) 227
BtsIMutI CAGTG 1 cut(s) 581
BveI ACCTGC 1 cut(s) 443
Cac8I GCNNGC 2 cut(s) 774, 870
CaiI CAGNNNCTG 1 cut(s) 583
CciI TCATGA 2 cut(s) 633, 672
Csp6I GTAC 2 cut(s) 158, 828
CviAII CATG 7 cut(s) 44, 111, 221, 573, 634, 673, 805
CviQI GTAC 2 cut(s) 158, 828
DdeI CTNAG 5 cut(s) 328, 345, 398, 419, 527
DpnI GATC 1 cut(s) 692
DpnII GATC 1 cut(s) 690
EaeI YGGCCR 1 cut(s) 270
Eam1104I CTCTTC 1 cut(s) 146
EarI CTCTTC 1 cut(s) 146
Eco130I CCWWGG 1 cut(s) 929
Eco57I CTGAAG 2 cut(s) 777, 921
EcoNI CCTNNNNNAGG 1 cut(s) 959
EcoT14I CCWWGG 1 cut(s) 929
ErhI CCWWGG 1 cut(s) 929
FaeI CATG 7 cut(s) 47, 114, 224, 576, 637, 676, 808
FalI AAGNNNNNCTT 2 cut(s) 275, 307
FaqI GGGAC 1 cut(s) 577
FatI CATG 7 cut(s) 43, 110, 220, 572, 633, 672, 804
FblI GTMKAC 1 cut(s) 427
Fnu4HI GCNGC 1 cut(s) 358
FokI GGATG 1 cut(s) 214
Fsp4HI GCNGC 1 cut(s) 358
FspBI CTAG 3 cut(s) 266, 825, 930
GluI GCNGC 1 cut(s) 358
HaeIII GGCC 2 cut(s) 272, 324
Hin1II CATG 7 cut(s) 47, 114, 224, 576, 637, 676, 808
HincII GTYRAC 3 cut(s) 483, 625, 847
HindII GTYRAC 3 cut(s) 483, 625, 847
HindIII AAGCTT 1 cut(s) 197
HinfI GANTC 7 cut(s) 185, 216, 548, 645, 704, 787, 916
HphI GGTGA 2 cut(s) 114, 605
Hpy166II GTNNAC 6 cut(s) 106, 160, 428, 483, 625, 847
Hpy188I TCNGA 7 cut(s) 204, 422, 439, 513, 530, 891, 921
Hpy188III TCNNGA 4 cut(s) 171, 278, 634, 673
Hpy8I GTNNAC 6 cut(s) 106, 160, 428, 483, 625, 847
Hpy99I CGWCG 1 cut(s) 670
HpyAV CCTTC 2 cut(s) 663, 955
HpyCH4III ACNGT 4 cut(s) 91, 487, 585, 895
HpyCH4IV ACGT 1 cut(s) 668
HpyCH4V TGCA 5 cut(s) 19, 357, 452, 569, 872
HpyF10VI GCNNNNNNNGC 2 cut(s) 330, 878
HpyF3I CTNAG 5 cut(s) 328, 345, 398, 419, 527
HpySE526I ACGT 1 cut(s) 668
Hsp92II CATG 7 cut(s) 47, 114, 224, 576, 637, 676, 808
Kzo9I GATC 1 cut(s) 690
Lsp1109I GCAGC 1 cut(s) 369
MaeI CTAG 3 cut(s) 266, 825, 930
MaeII ACGT 1 cut(s) 668
MaeIII GTNAC 2 cut(s) 120, 407
MalI GATC 1 cut(s) 692
MboI GATC 1 cut(s) 690
MboII GAAGA 3 cut(s) 163, 770, 826
MhlI GDGCHC 1 cut(s) 721
MlsI TGGCCA 1 cut(s) 272
MluCI AATT 1 cut(s) 39
MluNI TGGCCA 1 cut(s) 272
MlyI GAGTC 1 cut(s) 179
MmeI TCCRAC 3 cut(s) 462, 731, 914
MnlI CCTC 5 cut(s) 147, 299, 335, 428, 803
Mox20I TGGCCA 1 cut(s) 272
MscI TGGCCA 1 cut(s) 272
MseI TTAA 7 cut(s) 195, 246, 462, 537, 554, 587, 968
MslI CAYNNNNRTG 3 cut(s) 48, 618, 712
Msp20I TGGCCA 1 cut(s) 272
MspA1I CMGCKG 1 cut(s) 478
MwoI GCNNNNNNNGC 2 cut(s) 330, 878
NdeII GATC 1 cut(s) 690
NlaIII CATG 7 cut(s) 47, 114, 224, 576, 637, 676, 808
NlaIV GGNNCC 1 cut(s) 436
NmuCI GTSAC 1 cut(s) 120
NspI RCATGY 1 cut(s) 576
PagI TCATGA 2 cut(s) 633, 672
PciI ACATGT 1 cut(s) 572
PfeI GAWTC 6 cut(s) 216, 548, 645, 704, 787, 916
PkrI GCNGC 1 cut(s) 359
PleI GAGTC 1 cut(s) 179
PpsI GAGTC 1 cut(s) 179
PscI ACATGT 1 cut(s) 572
PspN4I GGNNCC 1 cut(s) 436
PstI CTGCAG 1 cut(s) 874
PstNI CAGNNNCTG 1 cut(s) 583
PvuII CAGCTG 1 cut(s) 478
RsaI GTAC 2 cut(s) 159, 829
RsaNI GTAC 2 cut(s) 158, 828
RseI CAYNNNNRTG 3 cut(s) 48, 618, 712
SaqAI TTAA 7 cut(s) 195, 246, 462, 537, 554, 587, 968
SatI GCNGC 1 cut(s) 358
Sau3AI GATC 1 cut(s) 690
SchI GAGTC 1 cut(s) 179
SduI GDGCHC 1 cut(s) 721
SetI ASST 8 cut(s) 102, 201, 351, 457, 480, 633, 671, 931
SfcI CTRYAG 1 cut(s) 870
SmiMI CAYNNNNRTG 3 cut(s) 48, 618, 712
SmlI CTYRAG 1 cut(s) 302
SmoI CTYRAG 1 cut(s) 302
Sse9I AATT 1 cut(s) 39
SspI AATATT 1 cut(s) 820
SspMI CTAG 3 cut(s) 266, 825, 930
StyI CCWWGG 1 cut(s) 929
TaaI ACNGT 4 cut(s) 91, 487, 585, 895
TaiI ACGT 1 cut(s) 671
TasI AATT 1 cut(s) 39
TatI WGTACW 1 cut(s) 827
TfiI GAWTC 6 cut(s) 216, 548, 645, 704, 787, 916
Tru1I TTAA 7 cut(s) 195, 246, 462, 537, 554, 587, 968
Tru9I TTAA 7 cut(s) 195, 246, 462, 537, 554, 587, 968
TscAI CASTG 1 cut(s) 588
TseFI GTSAC 1 cut(s) 120
TseI GCWGC 1 cut(s) 357
Tsp45I GTSAC 1 cut(s) 120
TspDTI ATGAA 6 cut(s) 32, 84, 661, 689, 696, 815
TspGWI ACGGA 1 cut(s) 716
TspRI CASTG 1 cut(s) 588
XagI CCTNNNNNAGG 1 cut(s) 959
XapI RAATTY 1 cut(s) 39
XceI RCATGY 1 cut(s) 576
XcmI CCANNNNNNNNNTGG 1 cut(s) 74
XmaJI CCTAGG 1 cut(s) 929
XmiI GTMKAC 1 cut(s) 427
XspI CTAG 3 cut(s) 266, 825, 930
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.