Rroxscaffold_2G00101480
ERF Family

mTERF

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000263
Physical Location & Seq
Forward (+)
23428023 .. 23432634
4612 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00101480.1

Sequence Viewer

Length: 705 bp
ATGGTCATGCGACAAGGATGTGCGTTTAAGGTGAGGCATAGGGTACACTTTGAATCCCCAGAAAAACCAGACTCAGTTGTTAAGCTTTTCAAGGACTATGGATTCAGCAATGCCCACATCTCTGAAATTGTCAAGAAACTCCCAGAGCTGCTCTTAGTCAGTGAGAAGACCCTTTTGCCTAAACTTGAGTTCTTGGGTTCCATTGGAATTACAGGCACTCCCCTGGCTGAGACCCTTTGCGGCAACCCAACTGTGTTGAAAATGAGCTTAGAGAATTGTATTAGACCTTGTTGTGATATCATCAAAACTCTAGGTATCCCTTATGGAAAGGTCCCTCGTTTCATTAAGAGATCGCAGTGGTTGTTTAAGGTCAAAGTACTGAGCAATGTCGCTCGCAATGTTTCAGTACTGAGGTCACTAAAAGTGCCAGAATCCACAATTGATTTGTGTAGGCCCCACAATCTTGTTCCAGTGTCCACTGACGCCGATGAGTTTAATGAAAATGTCAACAAGGTCATCAGTATGGGATTTCCTCCTTCAAGCTGTACATTTATGAAAGCACTGTATGTGATTTCTATGATGGATGAATCAAAATTGGCACAGAGGAAGGAGTTTTATCGGAAGTTTGGTTGGACTGAAGATAATATATTGTTGGCATTTAGAAAGAATCCCATTTTTATGTCCATTTCTGAGAAGAATTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
mTERF

Protein Analysis

234

Amino Acids

26.62

Weight (kDa)

9.38

Isoelectric Point (pI)

43.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
mTERF PF02536 28 - 233 3.6e-19 mTERF
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000263)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G21150 AT1G21150 AT1G21150
fragaria_vesca FvH4_4g17900 FvH4_6g26110 FvH4_6g33880 FvH4_6g33900 FvH4_6g34011 FvH4_6g34011 FvH4_6g34011 FvH4_6g34011 FvH4_6g34030 FvH4_6g34040 FvH4_6g34070 FvH4_6g34070 FvH4_7g12830
malus_domestica MD09G1189800.v1.1 MD09G1189900.v1.1 MD09G1190000.v1.1 MD14G1088800.v1.1 MD14G1088900.v1.1 MD17G1172900.v1.1
pyrus_communis pycom07g03460 pycom09g10650 pycom14g07860
rosa_chinensis RchiOBHm_Chr1g0351891 RchiOBHm_Chr1g0351901 RchiOBHm_Chr2g0143771 RchiOBHm_Chr2g0143861 RchiOBHm_Chr2g0143881 RchiOBHm_Chr2g0143941 RchiOBHm_Chr2g0143951 RchiOBHm_Chr2g0144081 RchiOBHm_Chr2g0144091 RchiOBHm_Chr2g0144211 RchiOBHm_Chr2g0144231 RchiOBHm_Chr2g0144241 RchiOBHm_Chr2g0144291 RchiOBHm_Chr2g0144301 RchiOBHm_Chr2g0144311 RchiOBHm_Chr2g0144331 RchiOBHm_Chr2g0144341 RchiOBHm_Chr4g0422021 RchiOBHm_Chr4g0422031
rosa_laevigata RLG00000007639 RLG00000020063 RLG00000020071 RLG00000020072 RLG00000020074
rosa_multiflora Rmu_co8214640.1_g000001 Rmu_co8471033.1_g000001 Rmu_sc0000789.1_g000002 Rmu_sc0001321.1_g000001 Rmu_sc0004340.1_g000001 Rmu_sc0004897.1_g000001 Rmu_sc0007105.1_g000005 Rmu_sc0009498.1_g000001 Rmu_sc0009498.1_g000002 Rmu_sc0019136.1_g000001 Rmu_sc0020327.1_g000002 Rmu_sc0020327.1_g000003 Rmu_sc0022905.1_g000001 Rmu_sc0032602.1_g000003 Rmu_sc0032602.1_g000004
rosa_roxburghii Rroxscaffold_2G00101380 Rroxscaffold_2G00101390 Rroxscaffold_2G00101400 Rroxscaffold_2G00101410 Rroxscaffold_2G00101480 Rroxscaffold_2G00101490 Rroxscaffold_4G00303470 Rroxscaffold_5G00364130 Rroxscaffold_5G00364150
rosa_rugosa Rorug01G0222600 Rorug02G0384700 Rorug02G0384800 Rorug02G0385800 Rorug02G0385900 Rorug02G0386000 Rorug02G0386000 Rorug02G0386100 Rorug04G0176700 Rorug04G0176800.1
rosa_samantha Rh1AG236500 Rh1AG236600 Rh1BG206900 Rh1CG221000 Rh1CG221100 Rh2BG444800 Rh2BG444900 Rh2BG446600 Rh2BG446700 Rh2BG447600 Rh2BG448100 Rh2BG448400 Rh2BG448500 Rh2BG448700 Rh2BG448800 Rh2CG423500 Rh2CG423600 Rh2CG424800 Rh2CG424900 Rh2CG425100 Rh2CG425200 Rh2DG455200 Rh2DG455300 Rh2DG456900 Rh2DG457000 Rh2DG457100 Rh2DG457600 Rh2DG457900 Rh2DG458000 Rh2DG458300 Rh2DG458400 Rh4AG236100 Rh4AG236200 Rh4BG239200 Rh4CG250900 Rh4CG251100
rosa_wichuraiana Rw0G000400 Rw0G015990 Rw0G017200 Rw1G020580 Rw2G033310 Rw2G035630 Rw2G035640 Rw2G035790 Rw2G035800 Rw2G035840 Rw2G036160 Rw4G019830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 240
AcsI RAATTY 1 cut(s) 697
AcuI CTGAAG 1 cut(s) 657
AcyI GRCGYC 1 cut(s) 483
AfaI GTAC 4 cut(s) 45, 378, 408, 547
AgsI TTSAA 4 cut(s) 53, 91, 259, 540
AjnI CCWGG 1 cut(s) 222
AluBI AGCT 4 cut(s) 85, 148, 267, 543
AluI AGCT 4 cut(s) 85, 148, 267, 543
Alw26I GTCTC 1 cut(s) 224
AoxI GGCC 1 cut(s) 452
ApeKI GCWGC 1 cut(s) 148
ApoI RAATTY 1 cut(s) 697
AspS9I GGNCC 2 cut(s) 331, 453
AsuHPI GGTGA 1 cut(s) 43
AvaII GGWCC 1 cut(s) 331
BbsI GAAGAC 1 cut(s) 173
BbvI GCAGC 1 cut(s) 135
BccI CCATC 1 cut(s) 574
BciT130I CCWGG 1 cut(s) 224
BciVI GTATCC 1 cut(s) 326
BcoDI GTCTC 1 cut(s) 224
BfaI CTAG 1 cut(s) 311
BfuI GTATCC 1 cut(s) 326
BisI GCNGC 2 cut(s) 149, 241
BlsI GCNGC 2 cut(s) 150, 242
BmcAI AGTACT 2 cut(s) 378, 408
Bme1390I CCNGG 1 cut(s) 224
Bme18I GGWCC 1 cut(s) 331
BmgT120I GGNCC 2 cut(s) 331, 453
BmiI GGNNCC 3 cut(s) 199, 333, 455
BmrFI CCNGG 1 cut(s) 224
BpiI GAAGAC 1 cut(s) 173
BpuEI CTTGAG 1 cut(s) 206
BsaHI GRCGYC 1 cut(s) 483
BsaI GGTCTC 1 cut(s) 224
BsaJI CCNNGG 1 cut(s) 222
BsaXI ACNNNNNCTCC 2 cut(s) 202, 232
Bse1I ACTGG 1 cut(s) 470
Bse3DI GCAATG 3 cut(s) 115, 391, 403
BseBI CCWGG 1 cut(s) 224
BseDI CCNNGG 1 cut(s) 222
BseGI GGATG 2 cut(s) 23, 589
BseMI GCAATG 3 cut(s) 115, 391, 403
BseMII CTCAG 5 cut(s) 87, 219, 371, 401, 681
BseNI ACTGG 1 cut(s) 470
BseXI GCAGC 1 cut(s) 135
BshFI GGCC 1 cut(s) 454
BslFI GGGAC 1 cut(s) 317
BsmAI GTCTC 1 cut(s) 224
BsmFI GGGAC 1 cut(s) 317
BsnI GGCC 1 cut(s) 454
Bso31I GGTCTC 1 cut(s) 224
Bsp1407I TGTACA 1 cut(s) 545
Bsp143I GATC 1 cut(s) 350
BspACI CCGC 1 cut(s) 240
BspANI GGCC 1 cut(s) 454
BspCNI CTCAG 5 cut(s) 86, 220, 372, 402, 682
BspLI GGNNCC 3 cut(s) 199, 333, 455
BspTNI GGTCTC 1 cut(s) 224
BsrDI GCAATG 3 cut(s) 115, 391, 403
BsrGI TGTACA 1 cut(s) 545
BsrI ACTGG 1 cut(s) 470
BssECI CCNNGG 1 cut(s) 222
BssMI GATC 1 cut(s) 350
BssNI GRCGYC 1 cut(s) 483
Bst2UI CCWGG 1 cut(s) 224
Bst4CI ACNGT 2 cut(s) 253, 564
BstACI GRCGYC 1 cut(s) 483
BstAUI TGTACA 1 cut(s) 545
BstC8I GCNNGC 1 cut(s) 394
BstDEI CTNAG 7 cut(s) 73, 154, 228, 268, 380, 410, 690
BstF5I GGATG 2 cut(s) 23, 589
BstKTI GATC 1 cut(s) 353
BstMAI GTCTC 1 cut(s) 224
BstMBI GATC 1 cut(s) 350
BstNI CCWGG 1 cut(s) 224
BstSCI CCNGG 1 cut(s) 222
BstV1I GCAGC 1 cut(s) 135
BstV2I GAAGAC 1 cut(s) 173
BsuI GTATCC 1 cut(s) 326
BsuRI GGCC 1 cut(s) 454
BtsCI GGATG 2 cut(s) 23, 589
BtsI GCAGTG 1 cut(s) 362
BtsIMutI CAGTG 5 cut(s) 166, 362, 477, 477, 560
Cac8I GCNNGC 1 cut(s) 394
Cfr13I GGNCC 2 cut(s) 331, 453
CseI GACGC 1 cut(s) 491
Csp6I GTAC 4 cut(s) 44, 377, 407, 546
CviAII CATG 1 cut(s) 7
CviJI RGCY 6 cut(s) 85, 148, 227, 267, 454, 543
CviKI_1 RGCY 6 cut(s) 85, 148, 227, 267, 454, 543
CviQI GTAC 4 cut(s) 44, 377, 407, 546
DdeI CTNAG 7 cut(s) 73, 154, 228, 268, 380, 410, 690
DpnI GATC 1 cut(s) 352
DpnII GATC 1 cut(s) 350
Eco31I GGTCTC 1 cut(s) 224
Eco32I GATATC 1 cut(s) 298
Eco47I GGWCC 1 cut(s) 331
Eco57I CTGAAG 1 cut(s) 657
EcoO109I RGGNCCY 2 cut(s) 331, 453
EcoRII CCWGG 1 cut(s) 222
EcoRV GATATC 1 cut(s) 298
FaeI CATG 1 cut(s) 10
FaqI GGGAC 1 cut(s) 317
FatI CATG 1 cut(s) 6
Fnu4HI GCNGC 2 cut(s) 149, 241
FokI GGATG 2 cut(s) 30, 596
Fsp4HI GCNGC 2 cut(s) 149, 241
FspBI CTAG 1 cut(s) 311
GluI GCNGC 2 cut(s) 149, 241
HaeIII GGCC 1 cut(s) 454
HgaI GACGC 1 cut(s) 491
Hin1I GRCGYC 1 cut(s) 483
Hin1II CATG 1 cut(s) 10
HincII GTYRAC 1 cut(s) 508
HindII GTYRAC 1 cut(s) 508
HindIII AAGCTT 1 cut(s) 83
HinfI GANTC 6 cut(s) 53, 71, 102, 431, 587, 667
HphI GGTGA 1 cut(s) 43
Hpy166II GTNNAC 3 cut(s) 46, 477, 508
Hpy188I TCNGA 3 cut(s) 124, 621, 691
Hpy188III TCNNGA 1 cut(s) 133
Hpy8I GTNNAC 3 cut(s) 46, 477, 508
HpyAV CCTTC 2 cut(s) 546, 601
HpyCH4III ACNGT 2 cut(s) 253, 564
HpyF3I CTNAG 7 cut(s) 73, 154, 228, 268, 380, 410, 690
Hsp92I GRCGYC 1 cut(s) 483
Hsp92II CATG 1 cut(s) 10
Kzo9I GATC 1 cut(s) 350
LpnPI CCDG 8 cut(s) 72, 81, 156, 198, 209, 236, 441, 483
Lsp1109I GCAGC 1 cut(s) 135
MaeI CTAG 1 cut(s) 311
MaeIII GTNAC 1 cut(s) 414
MalI GATC 1 cut(s) 352
MboI GATC 1 cut(s) 350
MboII GAAGA 2 cut(s) 178, 650
MfeI CAATTG 1 cut(s) 438
MluCI AATT 6 cut(s) 126, 207, 274, 438, 593, 697
MlyI GAGTC 1 cut(s) 65
MmeI TCCRAC 1 cut(s) 611
MnlI CCTC 5 cut(s) 27, 345, 405, 543, 597
MseI TTAA 5 cut(s) 27, 81, 345, 366, 495
MslI CAYNNNNRTG 2 cut(s) 521, 677
MspR9I CCNGG 1 cut(s) 224
MunI CAATTG 1 cut(s) 438
MvaI CCWGG 1 cut(s) 224
NdeII GATC 1 cut(s) 350
NlaIII CATG 1 cut(s) 10
NlaIV GGNNCC 3 cut(s) 199, 333, 455
NmuCI GTSAC 1 cut(s) 414
PfeI GAWTC 5 cut(s) 53, 102, 431, 587, 667
PkrI GCNGC 2 cut(s) 150, 242
PleI GAGTC 1 cut(s) 65
PpsI GAGTC 1 cut(s) 65
PpuMI RGGWCCY 1 cut(s) 331
Psp5II RGGWCCY 1 cut(s) 331
Psp6I CCWGG 1 cut(s) 222
PspGI CCWGG 1 cut(s) 222
PspN4I GGNNCC 3 cut(s) 199, 333, 455
PspPI GGNCC 2 cut(s) 331, 453
PspPPI RGGWCCY 1 cut(s) 331
RsaI GTAC 4 cut(s) 45, 378, 408, 547
RsaNI GTAC 4 cut(s) 44, 377, 407, 546
RseI CAYNNNNRTG 2 cut(s) 521, 677
SaqAI TTAA 5 cut(s) 27, 81, 345, 366, 495
SatI GCNGC 2 cut(s) 149, 241
Sau3AI GATC 1 cut(s) 350
Sau96I GGNCC 2 cut(s) 331, 453
ScaI AGTACT 2 cut(s) 378, 408
SchI GAGTC 1 cut(s) 65
ScrFI CCNGG 1 cut(s) 224
SinI GGWCC 1 cut(s) 331
SmiMI CAYNNNNRTG 2 cut(s) 521, 677
SmlI CTYRAG 1 cut(s) 185
SmoI CTYRAG 1 cut(s) 185
Sse9I AATT 6 cut(s) 126, 207, 274, 438, 593, 697
SsiI CCGC 1 cut(s) 240
SspMI CTAG 1 cut(s) 311
StyD4I CCNGG 1 cut(s) 222
TaaI ACNGT 2 cut(s) 253, 564
TasI AATT 6 cut(s) 126, 207, 274, 438, 593, 697
TatI WGTACW 3 cut(s) 376, 406, 545
TauI GCSGC 1 cut(s) 243
TfiI GAWTC 5 cut(s) 53, 102, 431, 587, 667
Tru1I TTAA 5 cut(s) 27, 81, 345, 366, 495
Tru9I TTAA 5 cut(s) 27, 81, 345, 366, 495
TscAI CASTG 5 cut(s) 166, 362, 477, 484, 567
TseFI GTSAC 1 cut(s) 414
TseI GCWGC 1 cut(s) 148
Tsp45I GTSAC 1 cut(s) 414
TspDTI ATGAA 4 cut(s) 331, 513, 569, 600
TspRI CASTG 5 cut(s) 166, 362, 477, 484, 567
VpaK11BI GGWCC 1 cut(s) 331
XapI RAATTY 1 cut(s) 697
XspI CTAG 1 cut(s) 311
ZrmI AGTACT 2 cut(s) 378, 408
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.