FvH4_6g33900
ERF Family

mTERF

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000263
Physical Location & Seq
Reverse (-)
26827928 .. 26829145
1218 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g33900.t1

Sequence Viewer

Length: 1218 bp
ATGATTGGTTTTTGCTGTAGAAGATTTCAATTACTATTTCCCAGTCGTAGCAATGCTGTTAATTCACTTACCCGTGCTCATTGTACAAGATTGTATTCATCAAAATCATTGTTAAGAAATACCCAAGATGAAAAAGATTGCTCTTTTACAGTTTCATACCTTGTAAACTCATGTGGGTTATCCCCAGAACTTGCTCTCTCTTTGTTCAAGAGGCATAGGGTTCAGTTTAAATCCCCAGAAAAGCCAGACTCGGTTGTTAAGCTTTTCAAAGACTATGGATTTGGGGATACCCACATCTCCGAAATTGTCAAGAGACTTCCAGAGCTGCTCATAGTCAATGCTGAGAAGACCCTTTTGCCGAAACTCGAGTTCTTTGACTCCGTTGGGATTAAAGGCACTGCCCTGGCTCAGGTCCTTTCTGGCAACCCAATTGTGTTGAAATTGAGCTTAGAGAATAATATCAGACCTTGCTATGATATCATCAAGACTCTAGGTATCCCTGATGGAAAGGTCCCTCGTTTCATTATGAAATCCCATAGGATGTTTAAGGTCAATGTACTGAGCAATGCTGCTCGGAATGTTTCATTTCTGAGGTCCATAAAAGTGCTGGAATCCACACTTAATCTGTGTAGGCCCGAGACTCTTTTTACAATGACGACCGATGCTGATGAGTTTAATGAAAATGTCAACAAGGTCATCAGCATGGGATTTCCTCCTTCAAGCTGTACATTTGTGAAAGCACTGTACGTAGTTTCTGTTATGGATGAGTCAAAGTTGGCACAGAGGATGAAGTTTTATAGGAAGTGGGGTTGGACTGAAAAGGATGTGTTGTTGGCATTTAGAAAGAATCCTCCATTTATGTGCTACAGTGAGCTGCTTATATCTAAGAAATTGGATTTTTATATGAATACAATGGGTTGCCTGCCCTCAGATGTAGCTGGATATCCAGATGTTCTGACTTATAGTTTGGAGAAGCGAATCATACCTCGGTGTTCAGTTATCAGAGTTCTCCAGTTACAGGGCTTAATTGCAAAGGAAGATGTATCTATAAATACCATTCTGAAGAGAAGGGAGAAGTGGTTCTTGGAAAGTTTTGTGATCAAATATCAAGAGCAAGTACCTGAATTATTGAGCATATTTCAAGGGAAAATGAGTCTTGCGGAACTGGGCTTAGGATTTGTGAAAAGATATGAAGTGAAACAACAGTGTGATGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
mTERF

Protein Analysis

406

Amino Acids

46.34

Weight (kDa)

9.31

Isoelectric Point (pI)

43.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
mTERF PF02536 87 - 207 6.7e-16 mTERF
mTERF PF02536 246 - 361 8.6e-19 mTERF
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000263)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G21150 AT1G21150 AT1G21150
fragaria_vesca FvH4_4g17900 FvH4_6g26110 FvH4_6g33880 FvH4_6g33900 FvH4_6g34011 FvH4_6g34011 FvH4_6g34011 FvH4_6g34011 FvH4_6g34030 FvH4_6g34040 FvH4_6g34070 FvH4_6g34070 FvH4_7g12830
malus_domestica MD09G1189800.v1.1 MD09G1189900.v1.1 MD09G1190000.v1.1 MD14G1088800.v1.1 MD14G1088900.v1.1 MD17G1172900.v1.1
pyrus_communis pycom07g03460 pycom09g10650 pycom14g07860
rosa_chinensis RchiOBHm_Chr1g0351891 RchiOBHm_Chr1g0351901 RchiOBHm_Chr2g0143771 RchiOBHm_Chr2g0143861 RchiOBHm_Chr2g0143881 RchiOBHm_Chr2g0143941 RchiOBHm_Chr2g0143951 RchiOBHm_Chr2g0144081 RchiOBHm_Chr2g0144091 RchiOBHm_Chr2g0144211 RchiOBHm_Chr2g0144231 RchiOBHm_Chr2g0144241 RchiOBHm_Chr2g0144291 RchiOBHm_Chr2g0144301 RchiOBHm_Chr2g0144311 RchiOBHm_Chr2g0144331 RchiOBHm_Chr2g0144341 RchiOBHm_Chr4g0422021 RchiOBHm_Chr4g0422031
rosa_laevigata RLG00000007639 RLG00000020063 RLG00000020071 RLG00000020072 RLG00000020074
rosa_multiflora Rmu_co8214640.1_g000001 Rmu_co8471033.1_g000001 Rmu_sc0000789.1_g000002 Rmu_sc0001321.1_g000001 Rmu_sc0004340.1_g000001 Rmu_sc0004897.1_g000001 Rmu_sc0007105.1_g000005 Rmu_sc0009498.1_g000001 Rmu_sc0009498.1_g000002 Rmu_sc0019136.1_g000001 Rmu_sc0020327.1_g000002 Rmu_sc0020327.1_g000003 Rmu_sc0022905.1_g000001 Rmu_sc0032602.1_g000003 Rmu_sc0032602.1_g000004
rosa_roxburghii Rroxscaffold_2G00101380 Rroxscaffold_2G00101390 Rroxscaffold_2G00101400 Rroxscaffold_2G00101410 Rroxscaffold_2G00101480 Rroxscaffold_2G00101490 Rroxscaffold_4G00303470 Rroxscaffold_5G00364130 Rroxscaffold_5G00364150
rosa_rugosa Rorug01G0222600 Rorug02G0384700 Rorug02G0384800 Rorug02G0385800 Rorug02G0385900 Rorug02G0386000 Rorug02G0386000 Rorug02G0386100 Rorug04G0176700 Rorug04G0176800.1
rosa_samantha Rh1AG236500 Rh1AG236600 Rh1BG206900 Rh1CG221000 Rh1CG221100 Rh2BG444800 Rh2BG444900 Rh2BG446600 Rh2BG446700 Rh2BG447600 Rh2BG448100 Rh2BG448400 Rh2BG448500 Rh2BG448700 Rh2BG448800 Rh2CG423500 Rh2CG423600 Rh2CG424800 Rh2CG424900 Rh2CG425100 Rh2CG425200 Rh2DG455200 Rh2DG455300 Rh2DG456900 Rh2DG457000 Rh2DG457100 Rh2DG457600 Rh2DG457900 Rh2DG458000 Rh2DG458300 Rh2DG458400 Rh4AG236100 Rh4AG236200 Rh4BG239200 Rh4CG250900 Rh4CG251100
rosa_wichuraiana Rw0G000400 Rw0G015990 Rw0G017200 Rw1G020580 Rw2G033310 Rw2G035630 Rw2G035640 Rw2G035790 Rw2G035800 Rw2G035840 Rw2G036160 Rw4G019830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 1160
AcuI CTGAAG 1 cut(s) 1082
AfaI GTAC 5 cut(s) 85, 558, 727, 746, 1119
AfiI CCNNNNNNNGG 2 cut(s) 409, 1018
AgsI TTSAA 6 cut(s) 29, 208, 268, 439, 720, 1142
AjnI CCWGG 1 cut(s) 402
AjuI GAANNNNNNNTTGG 2 cut(s) 1067, 1099
AloI GAACNNNNNNTCC 2 cut(s) 1064, 1096
AluBI AGCT 6 cut(s) 262, 325, 447, 723, 874, 938
AluI AGCT 6 cut(s) 262, 325, 447, 723, 874, 938
Alw21I GWGCWC 1 cut(s) 79
Alw26I GTCTC 2 cut(s) 307, 632
Ama87I CYCGRG 2 cut(s) 365, 635
AoxI GGCC 1 cut(s) 632
ApeKI GCWGC 3 cut(s) 325, 569, 874
ArsI GACNNNNNNTTYG 4 cut(s) 263, 295, 949, 981
Asp700I GAANNNNTTC 1 cut(s) 1079
AspS9I GGNCC 4 cut(s) 412, 511, 594, 633
AvaI CYCGRG 2 cut(s) 365, 635
AvaII GGWCC 3 cut(s) 412, 511, 594
BbsI GAAGAC 1 cut(s) 353
Bbv12I GWGCWC 1 cut(s) 79
BbvI GCAGC 3 cut(s) 312, 556, 861
BccI CCATC 1 cut(s) 497
BciT130I CCWGG 1 cut(s) 404
BciVI GTATCC 2 cut(s) 280, 506
BclI TGATCA 1 cut(s) 1098
BcoDI GTCTC 2 cut(s) 307, 632
BfaI CTAG 1 cut(s) 491
BfmI CTRYAG 2 cut(s) 16, 865
BfuI GTATCC 2 cut(s) 280, 506
BisI GCNGC 3 cut(s) 326, 570, 875
BlsI GCNGC 3 cut(s) 327, 571, 876
Bme1390I CCNGG 1 cut(s) 404
Bme18I GGWCC 3 cut(s) 412, 511, 594
BmeT110I CYCGRG 2 cut(s) 365, 635
BmgT120I GGNCC 4 cut(s) 412, 511, 594, 633
BmiI GGNNCC 1 cut(s) 513
BmrFI CCNGG 1 cut(s) 404
BmrI ACTGGG 2 cut(s) 36, 1175
BmsI GCATC 1 cut(s) 652
BmuI ACTGGG 2 cut(s) 36, 1175
BpiI GAAGAC 1 cut(s) 353
BpmI CTGGAG 1 cut(s) 995
Bpu10I CCTNAGC 2 cut(s) 408, 1171
BsaAI YACGTR 1 cut(s) 748
BsaJI CCNNGG 2 cut(s) 402, 986
BsaXI ACNNNNNCTCC 2 cut(s) 1064, 1094
Bsc4I CCNNNNNNNGG 2 cut(s) 409, 1018
Bse1I ACTGG 3 cut(s) 42, 1012, 1170
Bse3DI GCAATG 2 cut(s) 58, 571
BseBI CCWGG 1 cut(s) 404
BseDI CCNNGG 2 cut(s) 402, 986
BseGI GGATG 4 cut(s) 546, 769, 792, 829
BseLI CCNNNNNNNGG 2 cut(s) 409, 1018
BseMI GCAATG 2 cut(s) 58, 571
BseMII CTCAG 5 cut(s) 333, 422, 551, 581, 942
BseNI ACTGG 3 cut(s) 42, 1012, 1170
BseXI GCAGC 3 cut(s) 312, 556, 861
Bsh1285I CGRYCG 1 cut(s) 660
BshFI GGCC 1 cut(s) 634
BsiEI CGRYCG 1 cut(s) 660
BsiHKAI GWGCWC 1 cut(s) 79
BsiHKCI CYCGRG 2 cut(s) 365, 635
BslFI GGGAC 1 cut(s) 497
BslI CCNNNNNNNGG 2 cut(s) 409, 1018
BsmAI GTCTC 2 cut(s) 307, 632
BsmFI GGGAC 1 cut(s) 497
BsnI GGCC 1 cut(s) 634
BsoBI CYCGRG 2 cut(s) 365, 635
Bsp1286I GDGCHC 1 cut(s) 79
Bsp1407I TGTACA 2 cut(s) 83, 725
Bsp143I GATC 1 cut(s) 1098
BspACI CCGC 1 cut(s) 1160
BspANI GGCC 1 cut(s) 634
BspCNI CTCAG 5 cut(s) 334, 421, 552, 582, 941
BspLI GGNNCC 1 cut(s) 513
BsrDI GCAATG 2 cut(s) 58, 571
BsrGI TGTACA 2 cut(s) 83, 725
BsrI ACTGG 3 cut(s) 42, 1012, 1170
BssECI CCNNGG 2 cut(s) 402, 986
BssMI GATC 1 cut(s) 1098
Bst2UI CCWGG 1 cut(s) 404
Bst4CI ACNGT 4 cut(s) 151, 744, 869, 1206
Bst6I CTCTTC 1 cut(s) 1058
BstAUI TGTACA 2 cut(s) 83, 725
BstBAI YACGTR 1 cut(s) 748
BstC8I GCNNGC 1 cut(s) 923
BstDEI CTNAG 8 cut(s) 342, 408, 448, 560, 590, 885, 928, 1171
BstENI CCTNNNNNAGG 1 cut(s) 407
BstF5I GGATG 4 cut(s) 546, 769, 792, 829
BstKTI GATC 1 cut(s) 1101
BstMAI GTCTC 2 cut(s) 307, 632
BstMBI GATC 1 cut(s) 1098
BstMCI CGRYCG 1 cut(s) 660
BstNI CCWGG 1 cut(s) 404
BstSCI CCNGG 1 cut(s) 402
BstSFI CTRYAG 2 cut(s) 16, 865
BstSNI TACGTA 1 cut(s) 748
BstV1I GCAGC 3 cut(s) 312, 556, 861
BstV2I GAAGAC 1 cut(s) 353
BsuI GTATCC 2 cut(s) 280, 506
BsuRI GGCC 1 cut(s) 634
BtsCI GGATG 4 cut(s) 546, 769, 792, 829
BtsI GCAGTG 1 cut(s) 396
BtsIMutI CAGTG 4 cut(s) 396, 740, 874, 1211
Cac8I GCNNGC 1 cut(s) 923
Cfr13I GGNCC 4 cut(s) 412, 511, 594, 633
Csp6I GTAC 5 cut(s) 84, 557, 726, 745, 1118
CviAII CATG 2 cut(s) 171, 703
CviQI GTAC 5 cut(s) 84, 557, 726, 745, 1118
DdeI CTNAG 8 cut(s) 342, 408, 448, 560, 590, 885, 928, 1171
DpnI GATC 1 cut(s) 1100
DpnII GATC 1 cut(s) 1098
DraI TTTAAA 1 cut(s) 229
Eam1104I CTCTTC 1 cut(s) 1058
EarI CTCTTC 1 cut(s) 1058
Eco105I TACGTA 1 cut(s) 748
Eco32I GATATC 2 cut(s) 478, 944
Eco47I GGWCC 3 cut(s) 412, 511, 594
Eco57I CTGAAG 1 cut(s) 1082
Eco88I CYCGRG 2 cut(s) 365, 635
EcoNI CCTNNNNNAGG 1 cut(s) 407
EcoO109I RGGNCCY 2 cut(s) 412, 511
EcoRII CCWGG 1 cut(s) 402
EcoRV GATATC 2 cut(s) 478, 944
FaeI CATG 2 cut(s) 174, 706
FalI AAGNNNNNCTT 2 cut(s) 1067, 1099
FaqI GGGAC 1 cut(s) 497
FatI CATG 2 cut(s) 170, 702
FbaI TGATCA 1 cut(s) 1098
Fnu4HI GCNGC 3 cut(s) 326, 570, 875
FokI GGATG 4 cut(s) 553, 776, 799, 836
Fsp4HI GCNGC 3 cut(s) 326, 570, 875
FspBI CTAG 1 cut(s) 491
GluI GCNGC 3 cut(s) 326, 570, 875
GsuI CTGGAG 1 cut(s) 995
HaeIII GGCC 1 cut(s) 634
Hin1II CATG 2 cut(s) 174, 706
HincII GTYRAC 1 cut(s) 688
HindII GTYRAC 1 cut(s) 688
HindIII AAGCTT 1 cut(s) 260
HinfI GANTC 9 cut(s) 248, 377, 487, 611, 640, 767, 847, 978, 1153
Hpy166II GTNNAC 2 cut(s) 166, 688
Hpy188I TCNGA 8 cut(s) 301, 464, 576, 591, 931, 957, 1004, 1062
Hpy188III TCNNGA 6 cut(s) 208, 310, 320, 484, 947, 1109
Hpy8I GTNNAC 2 cut(s) 166, 688
HpyAV CCTTC 2 cut(s) 726, 1062
HpyCH4III ACNGT 4 cut(s) 151, 744, 869, 1206
HpyCH4IV ACGT 1 cut(s) 747
HpyCH4V TGCA 1 cut(s) 1031
HpyF3I CTNAG 8 cut(s) 342, 408, 448, 560, 590, 885, 928, 1171
HpySE526I ACGT 1 cut(s) 747
Hsp92II CATG 2 cut(s) 174, 706
Ksp22I TGATCA 1 cut(s) 1098
Kzo9I GATC 1 cut(s) 1098
Lsp1109I GCAGC 3 cut(s) 312, 556, 861
LweI GCATC 1 cut(s) 652
MaeI CTAG 1 cut(s) 491
MaeII ACGT 1 cut(s) 747
MaeIII GTNAC 1 cut(s) 1014
MalI GATC 1 cut(s) 1100
MboI GATC 1 cut(s) 1098
MboII GAAGA 4 cut(s) 33, 358, 1049, 1075
MfeI CAATTG 1 cut(s) 429
MhlI GDGCHC 1 cut(s) 79
MluCI AATT 8 cut(s) 29, 61, 303, 429, 440, 890, 1026, 1124
MlyI GAGTC 6 cut(s) 242, 371, 481, 634, 776, 1162
MmeI TCCRAC 1 cut(s) 791
MnlI CCTC 8 cut(s) 204, 525, 585, 723, 777, 861, 937, 996
MroXI GAANNNNTTC 1 cut(s) 1079
MseI TTAA 9 cut(s) 60, 113, 228, 258, 390, 546, 621, 675, 1025
MslI CAYNNNNRTG 3 cut(s) 602, 701, 859
MspR9I CCNGG 1 cut(s) 404
MunI CAATTG 1 cut(s) 429
MvaI CCWGG 1 cut(s) 404
NdeII GATC 1 cut(s) 1098
NlaIII CATG 2 cut(s) 174, 706
NlaIV GGNNCC 1 cut(s) 513
PaeR7I CTCGAG 1 cut(s) 365
PdmI GAANNNNTTC 1 cut(s) 1079
PfeI GAWTC 3 cut(s) 611, 847, 978
PkrI GCNGC 3 cut(s) 327, 571, 876
PleI GAGTC 6 cut(s) 242, 371, 481, 634, 775, 1161
PpsI GAGTC 6 cut(s) 242, 371, 481, 634, 775, 1161
Ppu21I YACGTR 1 cut(s) 748
PpuMI RGGWCCY 2 cut(s) 412, 511
Psp5II RGGWCCY 2 cut(s) 412, 511
Psp6I CCWGG 1 cut(s) 402
PspGI CCWGG 1 cut(s) 402
PspN4I GGNNCC 1 cut(s) 513
PspPI GGNCC 4 cut(s) 412, 511, 594, 633
PspPPI RGGWCCY 2 cut(s) 412, 511
PspXI VCTCGAGB 1 cut(s) 365
RsaI GTAC 5 cut(s) 85, 558, 727, 746, 1119
RsaNI GTAC 5 cut(s) 84, 557, 726, 745, 1118
RseI CAYNNNNRTG 3 cut(s) 602, 701, 859
SaqAI TTAA 9 cut(s) 60, 113, 228, 258, 390, 546, 621, 675, 1025
SatI GCNGC 3 cut(s) 326, 570, 875
Sau3AI GATC 1 cut(s) 1098
Sau96I GGNCC 4 cut(s) 412, 511, 594, 633
SchI GAGTC 6 cut(s) 242, 371, 481, 634, 776, 1162
ScrFI CCNGG 1 cut(s) 404
SduI GDGCHC 1 cut(s) 79
SfaNI GCATC 1 cut(s) 652
SfcI CTRYAG 2 cut(s) 16, 865
Sfr274I CTCGAG 1 cut(s) 365
SinI GGWCC 3 cut(s) 412, 511, 594
SlaI CTCGAG 1 cut(s) 365
SmiMI CAYNNNNRTG 3 cut(s) 602, 701, 859
SmlI CTYRAG 1 cut(s) 365
SmoI CTYRAG 1 cut(s) 365
SnaBI TACGTA 1 cut(s) 748
Sse9I AATT 8 cut(s) 29, 61, 303, 429, 440, 890, 1026, 1124
SsiI CCGC 1 cut(s) 1160
SspMI CTAG 1 cut(s) 491
StyD4I CCNGG 1 cut(s) 402
TaaI ACNGT 4 cut(s) 151, 744, 869, 1206
TaiI ACGT 1 cut(s) 750
TaqI TCGA 1 cut(s) 366
TaqII GACCGA 1 cut(s) 674
TasI AATT 8 cut(s) 29, 61, 303, 429, 440, 890, 1026, 1124
TatI WGTACW 3 cut(s) 83, 556, 725
TfiI GAWTC 3 cut(s) 611, 847, 978
Tru1I TTAA 9 cut(s) 60, 113, 228, 258, 390, 546, 621, 675, 1025
Tru9I TTAA 9 cut(s) 60, 113, 228, 258, 390, 546, 621, 675, 1025
TscAI CASTG 4 cut(s) 403, 747, 874, 1211
TseI GCWGC 3 cut(s) 325, 569, 874
TspGWI ACGGA 1 cut(s) 370
TspRI CASTG 4 cut(s) 403, 747, 874, 1211
VpaK11BI GGWCC 3 cut(s) 412, 511, 594
XagI CCTNNNNNAGG 1 cut(s) 407
XcmI CCANNNNNNNNNTGG 1 cut(s) 604
XhoI CTCGAG 1 cut(s) 365
XmnI GAANNNNTTC 1 cut(s) 1079
XspI CTAG 1 cut(s) 491
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.